Strain Fitness in Sphingobium sp. HT1-2 around GFF1025

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,024,044	+		GFF1023	0.83	+1.5
1,024,044	+		GFF1023	0.83	-0.7
1,024,057	-		GFF1023	0.83	-0.4
1,024,066	-		GFF1023	0.84	-0.2
1,024,084	+		GFF1023	0.85	-0.9
1,024,084	+		GFF1023	0.85	-0.5
1,024,090	+		GFF1023	0.86	+1.3
1,024,092	-		GFF1023	0.86	-1.0
1,024,092	-		GFF1023	0.86	-1.7
1,024,098	+		GFF1023	0.86	+0.1
1,024,105	+		GFF1023	0.87	-1.7
1,024,123	-		GFF1023	0.88	-0.5
1,024,131	+		GFF1023	0.89	-0.7
1,024,131	+		GFF1023	0.89	+0.5
1,024,133	-		GFF1023	0.89	-0.9
1,024,136	+		GFF1023	0.89	-0.8
1,024,139	-		GFF1023	0.89	-0.5
1,024,142	+		GFF1023	0.89	-1.0
1,024,142	+		GFF1023	0.89	-1.0
1,024,144	-		GFF1023	0.90	+1.4
1,024,178	-				-1.3
1,024,179	+				+0.2
1,024,179	+				-1.0
1,024,180	+				-1.0
1,024,180	+				+1.3
1,024,180	+				+1.8
1,024,180	+				-0.1
1,024,188	-				-1.5
1,024,188	-				-0.5
1,024,198	-				-0.5
1,024,217	-				-1.4
1,024,233	+				-0.9
1,024,233	+				+0.4
1,024,233	+				-0.2
1,024,233	+				+0.9
1,024,241	-				-2.1
1,024,254	-				-0.5
1,024,254	-				-0.2
1,024,254	-				-0.0
1,024,261	-				-0.2
1,024,269	-				-1.1
1,024,269	-				-0.2
1,024,360	-		GFF1024	0.11	-0.7
1,024,362	-		GFF1024	0.12	-1.3
1,024,364	+		GFF1024	0.12	-0.7
1,024,364	+		GFF1024	0.12	-0.4
1,024,372	-		GFF1024	0.13	+0.2
1,024,403	+		GFF1024	0.18	+0.3
1,024,431	+		GFF1024	0.23	-1.5
1,024,431	+		GFF1024	0.23	-0.9
1,024,431	+		GFF1024	0.23	-1.3
1,024,431	+		GFF1024	0.23	-0.1
1,024,439	-		GFF1024	0.24	-1.3
1,024,439	-		GFF1024	0.24	-1.0
1,024,439	-		GFF1024	0.24	-0.8
1,024,439	-		GFF1024	0.24	-1.5
1,024,439	-		GFF1024	0.24	-0.4
1,024,439	-		GFF1024	0.24	+0.3
1,024,439	-		GFF1024	0.24	-0.2
1,024,504	+		GFF1024	0.34	-0.4
1,024,504	+		GFF1024	0.34	-1.4
1,024,512	-		GFF1024	0.35	+0.4
1,024,512	-		GFF1024	0.35	-0.1
1,024,518	+		GFF1024	0.36	+1.1
1,024,579	+		GFF1024	0.46	+0.3
1,024,579	+		GFF1024	0.46	-0.0
1,024,579	+		GFF1024	0.46	-0.2
1,024,579	+		GFF1024	0.46	-0.4
1,024,579	+		GFF1024	0.46	-0.1
1,024,579	+		GFF1024	0.46	-0.2
1,024,587	-		GFF1024	0.47	-1.0
1,024,587	-		GFF1024	0.47	-0.9
1,024,587	-		GFF1024	0.47	-0.6
1,024,587	-		GFF1024	0.47	-1.0
1,024,587	-		GFF1024	0.47	-0.0
1,024,592	-		GFF1024	0.48	-0.4
1,024,597	-		GFF1024	0.49	+0.1
1,024,597	-		GFF1024	0.49	+0.0
1,024,635	-		GFF1024	0.54	-1.0
1,024,642	-		GFF1024	0.56	+0.4
1,024,648	-		GFF1024	0.56	+1.2
1,024,668	+		GFF1024	0.60	-0.4
1,024,687	+		GFF1024	0.63	-1.1
1,024,725	+		GFF1024	0.69	-0.2
1,024,727	-		GFF1024	0.69	+0.7
1,024,756	+		GFF1024	0.73	-0.1
1,024,756	+		GFF1024	0.73	+1.0
1,024,758	-		GFF1024	0.74	-0.2
1,024,760	+		GFF1024	0.74	-1.2
1,024,765	-		GFF1024	0.75	+0.0
1,024,783	-		GFF1024	0.78	-1.6
1,024,788	-		GFF1024	0.78	-0.9
1,024,788	-		GFF1024	0.78	-1.2
1,024,788	-		GFF1024	0.78	-0.5
1,024,788	-		GFF1024	0.78	-1.0
1,024,788	-		GFF1024	0.78	-1.0
1,024,803	-		GFF1024	0.81	-0.8
1,024,815	+		GFF1024	0.83	-0.4
1,024,837	+		GFF1024	0.86	-2.2
1,024,840	+		GFF1024	0.87	-2.4
1,024,840	+		GFF1024	0.87	-1.6
1,024,840	+		GFF1024	0.87	+2.2
1,024,840	+		GFF1024	0.87	+1.3
1,024,848	-		GFF1024	0.88	-1.2
1,024,858	+		GFF1024	0.89	+0.2
1,024,961	-				+0.6
1,024,968	+				-0.4
1,024,968	+				+0.6
1,024,968	+				-1.6
1,024,976	-				-1.2
1,024,976	-				-1.9
1,024,976	-				-0.0
1,024,982	-				-0.4
1,024,985	+				-1.0
1,025,027	-				+0.4
1,025,041	-				-0.6
1,025,166	+		GFF1025	0.19	-1.4
1,025,182	-		GFF1025	0.21	+0.3
1,025,199	-		GFF1025	0.23	+0.4
1,025,199	-		GFF1025	0.23	-0.7
1,025,208	-		GFF1025	0.24	+0.4
1,025,213	-		GFF1025	0.25	+0.6
1,025,226	-		GFF1025	0.26	-1.7
1,025,226	-		GFF1025	0.26	+0.5
1,025,242	+		GFF1025	0.28	-0.9
1,025,307	-		GFF1025	0.36	-0.5
1,025,307	-		GFF1025	0.36	-3.0
1,025,308	-		GFF1025	0.36	-0.0
1,025,319	+		GFF1025	0.37	+0.8
1,025,343	+		GFF1025	0.40	-1.0
1,025,399	-		GFF1025	0.47	+0.6
1,025,412	+		GFF1025	0.48	+0.2
1,025,412	+		GFF1025	0.48	-0.5
1,025,412	-		GFF1025	0.48	+0.6
1,025,420	-		GFF1025	0.49	-0.8
1,025,435	-		GFF1025	0.51	+0.1
1,025,435	-		GFF1025	0.51	-1.8
1,025,435	-		GFF1025	0.51	-0.1
1,025,465	+		GFF1025	0.55	-1.4
1,025,472	-		GFF1025	0.56	-2.0
1,025,473	-		GFF1025	0.56	-1.6
1,025,473	-		GFF1025	0.56	+0.1
1,025,473	-		GFF1025	0.56	+1.1
1,025,474	+		GFF1025	0.56	-0.1
1,025,489	+		GFF1025	0.58	+0.8
1,025,497	-		GFF1025	0.59	-1.6
1,025,497	-		GFF1025	0.59	-0.2
1,025,497	-		GFF1025	0.59	+0.7
1,025,533	-		GFF1025	0.63	-0.9
1,025,571	+		GFF1025	0.67	-0.5
1,025,639	+		GFF1025	0.75	-0.4
1,025,713	+		GFF1025	0.84	-0.4
1,025,732	+		GFF1025	0.87	+0.5
1,025,732	+		GFF1025	0.87	-0.5
1,025,732	+		GFF1025	0.87	-1.2
1,025,737	+		GFF1025	0.87	+1.2
1,025,737	+		GFF1025	0.87	-0.3
1,025,737	+		GFF1025	0.87	-1.1
1,025,737	+		GFF1025	0.87	-1.1
1,025,737	+		GFF1025	0.87	-0.6
1,025,737	+		GFF1025	0.87	+0.9
1,025,740	-		GFF1025	0.88	+0.7
1,025,740	-		GFF1025	0.88	+0.2
1,025,740	-		GFF1025	0.88	-0.2
1,025,740	-		GFF1025	0.88	+1.1
1,025,745	-		GFF1025	0.88	+0.4
1,025,745	-		GFF1025	0.88	+0.8
1,025,745	-		GFF1025	0.88	-0.8
1,025,768	-				-0.2
1,025,768	-				-1.2
1,025,768	-				+0.2
1,025,768	-				-0.8
1,025,769	-				-1.2
1,025,769	-				-1.0
1,025,775	-				-1.2
1,025,775	-				-0.2
1,025,775	-				-0.2
1,025,775	-				-1.7
1,025,775	-				-1.0
1,025,775	-				+0.9
1,025,775	-				-0.6
1,025,828	+				+0.9
1,025,828	+				-0.5
1,025,838	+				-0.8
1,025,839	+				-0.2
1,025,847	-				+2.0
1,025,864	+				-0.1
1,025,864	+				-0.4
1,025,870	+				-0.6
1,025,872	-				+0.2
1,025,879	-				-0.4
1,025,881	+				-0.1
1,025,881	+				-0.5
1,025,889	-				-1.0
1,025,889	-				-0.7
1,025,889	-				-0.5
1,025,891	+				+0.1
1,025,891	+				+0.0
1,025,891	+				-0.9
1,025,891	+				+1.0
1,025,891	+				+0.1
1,025,891	+				-0.1
1,025,891	+				-1.3
1,025,891	+				+0.5
1,025,891	+				-0.8
1,025,891	+				-0.7
1,025,891	+				+0.5
1,025,891	+				-0.6
1,025,891	+				-0.8
1,025,891	+				+0.5
1,025,891	+				+1.1
1,025,891	+				-0.1
1,025,891	+				+0.1
1,025,891	+				+0.4
1,025,891	+				+1.0
1,025,891	+				+0.3
1,025,891	+				-1.0
1,025,891	+				+0.1
1,025,891	+				+1.0
1,025,891	+				-1.2
1,025,891	+				-0.9
1,025,891	+				-1.2
1,025,891	+				-0.2
1,025,891	+				-0.7
1,025,891	+				+0.2
1,025,892	+				+0.6
1,025,899	-				-1.5
1,025,899	-				-0.2
1,025,899	-				-0.2
1,025,899	-				+1.0
1,025,899	-				-0.4
1,025,899	-				-0.6
1,025,899	-				+0.6
1,025,899	-				-1.0
1,025,899	-				-0.8
1,025,899	-				-0.5
1,025,899	-				-1.0
1,025,899	-				-1.1
1,025,899	-				+0.6
1,025,899	-				+1.2
1,025,899	-				-1.2
1,025,899	-				-0.2
1,025,899	-				-0.1
1,025,899	-				-0.7
1,025,899	-				-1.0
1,025,899	-				-0.2
1,025,899	-				-0.4
1,025,900	-				-0.7
1,025,902	+				-1.6
1,025,904	+				-0.7
1,025,910	-				+1.2
1,025,910	-				-0.1
1,025,911	-				+0.8
1,025,934	-				-0.8
1,025,939	-				-1.0
1,025,947	-				-0.5
1,025,976	-				+0.8
1,026,102	+		GFF1026	0.22	-0.5
1,026,119	-		GFF1026	0.25	-2.7
1,026,126	+		GFF1026	0.26	-1.6
1,026,145	-		GFF1026	0.28	-0.6
1,026,145	-		GFF1026	0.28	-0.0
1,026,315	-		GFF1026	0.51	+0.3
1,026,393	+		GFF1026	0.61	-1.6
1,026,393	+		GFF1026	0.61	+1.3
1,026,393	+		GFF1026	0.61	-1.7
1,026,398	+		GFF1026	0.62	-0.2
1,026,401	-		GFF1026	0.62	+0.0
1,026,401	-		GFF1026	0.62	+0.1
1,026,401	-		GFF1026	0.62	-1.5
1,026,401	-		GFF1026	0.62	-1.4
1,026,401	-		GFF1026	0.62	+1.0
1,026,401	-		GFF1026	0.62	+0.6
1,026,401	-		GFF1026	0.62	-0.3
1,026,401	-		GFF1026	0.62	-0.2
1,026,401	-		GFF1026	0.62	-0.6
1,026,401	-		GFF1026	0.62	-0.7
1,026,403	+		GFF1026	0.62	-0.5
1,026,406	-		GFF1026	0.63	-1.4
1,026,411	-		GFF1026	0.63	-1.4
1,026,432	-		GFF1026	0.66	-0.6
1,026,437	-		GFF1026	0.67	+0.4
1,026,573	+		GFF1026	0.85	-1.1
1,026,592	-		GFF1026	0.87	-1.8
1,026,659	-				-0.9
1,026,674	+				-1.1
1,026,689	+				+1.1
1,026,707	+				+0.7
1,026,717	+				-1.0
1,026,717	+				-0.6
1,026,722	+				+0.3
1,026,722	+				-0.1
1,026,722	+				+0.5
1,026,722	+				+0.3
1,026,722	+				-2.1
1,026,725	-				-1.6
1,026,727	+				+1.4
1,026,727	+				+0.7
1,026,727	+				+0.6
1,026,730	-				-1.6
1,026,730	-				-0.0
1,026,730	-				-0.1
1,026,730	-				-0.8
1,026,730	-				-2.0
1,026,735	-				-1.6
1,026,735	-				-1.0
1,026,735	-				-0.2
1,026,735	-				-1.0
1,026,735	-				+0.6
1,026,749	-				-0.1
1,026,752	-				-0.5
1,026,762	+				-0.2
1,026,762	+				-0.9
1,026,770	-				-0.6
1,026,775	-				+0.6
1,026,777	+				-2.0
1,026,785	+				-1.0
1,026,802	+				-0.8
1,026,812	+				-2.1
1,026,820	-				-1.4
1,026,820	-				+1.5
1,026,821	+				+0.8
1,026,825	-				+0.3
1,026,827	+				-0.8
1,026,832	+				+0.5
1,026,833	+				+1.4
1,026,841	-				-1.6
1,026,841	-				+0.1