Strain Fitness in Sphingobium sp. HT1-2 around GFF937

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
932,294	-		GFF935	0.52	+1.3
932,296	+		GFF935	0.53	+1.9
932,468	+		GFF935	0.85	+0.6
932,471	+		GFF935	0.85	+0.7
932,479	-		GFF935	0.87	-0.5
932,479	-		GFF935	0.87	-0.6
932,499	+				+0.4
932,499	+				-0.1
932,504	+				+0.5
932,518	+				-0.2
932,518	+				+0.8
932,519	+				-2.3
932,519	+				+0.0
932,519	+				+0.9
932,519	+				+0.4
932,527	-				+0.6
932,527	-				-0.2
932,527	-				-1.1
932,527	-				+0.3
932,529	+				-0.1
932,529	+				+0.7
932,529	+				+0.1
932,537	-				+1.2
932,537	-				-0.9
932,537	-				-0.0
932,537	-				+1.2
932,537	-				+0.5
932,537	-				-0.4
932,552	+				+0.2
932,602	-				+1.6
932,668	-				+1.5
932,703	+				+0.8
932,713	+				+2.2
932,713	+				-0.7
932,713	+				-0.5
932,713	+				-0.6
932,713	+				-0.3
932,713	+				-1.5
932,713	+				+1.2
932,721	-				+0.7
932,721	-				+0.7
932,721	-				-1.5
932,762	+		GFF936	0.14	-0.3
932,832	+		GFF936	0.30	+0.2
932,832	+		GFF936	0.30	-0.8
932,832	+		GFF936	0.30	+0.0
932,832	+		GFF936	0.30	+0.1
932,832	+		GFF936	0.30	-0.1
932,832	+		GFF936	0.30	-0.4
932,840	-		GFF936	0.32	+2.1
932,854	-		GFF936	0.35	-0.9
932,863	+		GFF936	0.37	+0.4
932,864	-		GFF936	0.37	+1.4
932,864	-		GFF936	0.37	+0.4
932,864	-		GFF936	0.37	+1.8
932,871	+		GFF936	0.39	-1.0
932,879	-		GFF936	0.41	+0.7
932,889	+		GFF936	0.43	+1.0
932,890	+		GFF936	0.43	-0.8
932,890	+		GFF936	0.43	-0.4
932,890	+		GFF936	0.43	-0.6
932,890	+		GFF936	0.43	-1.1
932,892	+		GFF936	0.44	-0.6
932,897	-		GFF936	0.45	+0.9
932,898	-		GFF936	0.45	+0.4
932,898	-		GFF936	0.45	-1.0
932,898	-		GFF936	0.45	-1.5
932,902	-		GFF936	0.46	+0.8
932,902	-		GFF936	0.46	+1.7
932,920	+		GFF936	0.50	-0.1
932,928	-		GFF936	0.52	-1.8
932,928	-		GFF936	0.52	-0.2
932,929	-		GFF936	0.52	-0.3
932,953	+		GFF936	0.57	+0.5
932,964	-		GFF936	0.60	+0.4
932,971	-		GFF936	0.61	+1.5
932,987	-		GFF936	0.65	+2.0
933,012	-		GFF936	0.71	+0.6
933,045	+		GFF936	0.78	-2.4
933,045	+		GFF936	0.78	-0.4
933,047	-		GFF936	0.79	-1.3
933,071	+		GFF936	0.84	-0.4
933,071	+		GFF936	0.84	+1.2
933,081	+		GFF936	0.86	-0.5
933,081	+		GFF936	0.86	+1.5
933,081	+		GFF936	0.86	-0.2
933,089	-		GFF936	0.88	-0.4
933,094	+		GFF936	0.89	+1.2
933,094	-		GFF936	0.89	+0.9
933,118	+				-1.5
933,123	+				-0.8
933,155	+				-0.1
933,161	-				-0.1
933,169	+				-0.4
933,179	+				+1.7
933,179	+				-1.1
933,179	+				-1.0
933,187	-				-0.4
933,187	-				-0.0
933,187	-				-1.5
933,210	-				-1.2
933,225	+				-0.2
933,233	-				+0.3
933,233	-				-0.3
933,238	-				+0.0
933,238	-				-0.5
933,259	-				-1.1
933,259	-				+1.0
933,265	+				-2.1
933,269	-				+1.5
933,319	+				+1.1
933,319	+				-0.6
933,327	-				-0.1
933,354	+		GFF937	0.11	-0.9
933,354	+		GFF937	0.11	-0.5
933,381	+		GFF937	0.15	-0.1
933,389	-		GFF937	0.16	+0.7
933,394	-		GFF937	0.17	+2.0
933,428	+		GFF937	0.22	-0.9
933,436	-		GFF937	0.23	+0.1
933,448	-		GFF937	0.25	-0.6
933,471	+		GFF937	0.28	-3.0
933,471	+		GFF937	0.28	-0.5
933,479	-		GFF937	0.30	-0.8
933,479	-		GFF937	0.30	-1.9
933,484	-		GFF937	0.30	-1.0
933,484	-		GFF937	0.30	-1.4
933,515	-		GFF937	0.35	+0.1
933,517	+		GFF937	0.35	-0.1
933,523	+		GFF937	0.36	-1.5
933,531	-		GFF937	0.37	-1.3
933,541	+		GFF937	0.39	-0.4
933,541	+		GFF937	0.39	-0.2
933,694	-		GFF937	0.62	+0.2
933,701	+		GFF937	0.63	-0.8
933,715	-		GFF937	0.65	+1.0
933,746	+		GFF937	0.70	-0.4
933,781	+		GFF937	0.75	+0.2
933,843	+		GFF937	0.85	-0.3
933,857	-		GFF937	0.87	-0.3
933,921	-				+1.5
933,929	-				-1.4
933,933	-				-0.3
933,945	-				-0.3
933,957	+				+0.5
933,992	+				-1.0
933,992	+				-1.8
934,005	+				+1.4
934,038	-		GFF938	0.16	+0.9
934,046	+		GFF938	0.18	+1.5
934,072	+		GFF938	0.25	+1.4
934,078	+		GFF938	0.26	+0.6
934,086	-		GFF938	0.28	-0.3
934,086	-		GFF938	0.28	+2.3
934,100	-		GFF938	0.32	-0.1
934,105	+		GFF938	0.33	-0.5
934,113	+		GFF938	0.35	-0.8
934,121	-		GFF938	0.37	-0.9
934,134	-		GFF938	0.40	+0.6
934,134	-		GFF938	0.40	-2.4
934,134	-		GFF938	0.40	+1.5
934,163	+		GFF938	0.48	-0.4
934,171	-		GFF938	0.50	-0.7
934,171	-		GFF938	0.50	+0.0
934,171	-		GFF938	0.50	+0.2
934,181	-		GFF938	0.52	+0.3
934,192	+		GFF938	0.55	+0.2
934,196	+		GFF938	0.56	+0.9
934,197	+		GFF938	0.56	-0.5
934,202	+		GFF938	0.57	-0.2
934,237	-		GFF938	0.66	+1.1
934,280	-		GFF938	0.77	-0.8
934,351	+				-0.4
934,441	-				+0.4
934,448	+				+1.1
934,461	+				-1.0
934,464	-				-0.4
934,469	-				+1.7
934,469	-				+0.6
934,510	-				-1.3
934,514	+				+0.1
934,522	-				-0.3
934,524	+				-0.6
934,537	-				+0.0
934,574	-				+0.0
934,606	+				-0.6
934,613	+				+0.3
934,624	+				+0.5
934,624	+				-1.1
934,640	+				-1.0
934,640	+				+0.7
934,664	+				+0.9
934,664	+				+0.1
934,679	-		GFF939	0.12	+0.6
934,691	+		GFF939	0.16	-0.5
934,691	+		GFF939	0.16	-0.3
934,699	-		GFF939	0.19	-0.4
934,704	-		GFF939	0.21	+0.2
934,713	+		GFF939	0.24	+1.5
934,723	+		GFF939	0.27	+0.3
934,724	+		GFF939	0.28	+1.1
934,749	+		GFF939	0.36	-0.7
934,755	-		GFF939	0.38	+1.5
934,773	+		GFF939	0.44	-1.0
934,808	+		GFF939	0.56	-1.7
934,808	+		GFF939	0.56	-1.5
934,816	-		GFF939	0.59	-0.8
934,816	-		GFF939	0.59	-0.6
934,830	+		GFF939	0.63	-0.5
934,830	+		GFF939	0.63	+0.1
934,834	-		GFF939	0.65	-1.3
934,836	-		GFF939	0.65	-1.3
934,838	-		GFF939	0.66	-0.4
934,838	-		GFF939	0.66	+0.9
934,838	-		GFF939	0.66	+0.4
934,838	-		GFF939	0.66	+0.6
934,838	-		GFF939	0.66	+0.5
934,838	-		GFF939	0.66	+1.5
934,838	-		GFF939	0.66	-1.1
934,847	-		GFF939	0.69	+0.4
934,858	-		GFF939	0.73	-0.1
934,869	-		GFF939	0.76	-0.3
934,883	-		GFF939	0.81	-0.6
934,919	+				+0.0
934,922	+				+0.5
934,927	+				+0.1
934,927	-				+0.5
934,940	+				-0.1