Strain Fitness in Sphingobium sp. HT1-2 around GFF935

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
931,026	-		GFF934	0.56	-0.6
931,037	+		GFF934	0.56	+0.0
931,042	+		GFF934	0.56	-0.9
931,078	+		GFF934	0.58	-1.4
931,078	+		GFF934	0.58	-0.1
931,078	+		GFF934	0.58	-0.0
931,078	+		GFF934	0.58	-0.4
931,078	+		GFF934	0.58	+0.7
931,078	+		GFF934	0.58	+0.0
931,086	-		GFF934	0.59	-0.2
931,086	-		GFF934	0.59	-0.3
931,086	-		GFF934	0.59	+0.5
931,086	-		GFF934	0.59	-1.1
931,086	-		GFF934	0.59	-0.5
931,089	+		GFF934	0.59	-1.7
931,089	+		GFF934	0.59	+0.4
931,097	-		GFF934	0.59	+0.3
931,145	+		GFF934	0.61	+0.6
931,168	+		GFF934	0.62	-0.2
931,177	+		GFF934	0.63	-0.0
931,246	+		GFF934	0.66	+0.6
931,258	+		GFF934	0.67	+0.2
931,288	+		GFF934	0.68	+0.4
931,303	+		GFF934	0.69	-0.8
931,309	-		GFF934	0.69	-0.1
931,311	-		GFF934	0.69	+1.8
931,397	-		GFF934	0.73	+2.1
931,399	+		GFF934	0.73	+0.2
931,440	+		GFF934	0.75	+1.1
931,445	+		GFF934	0.75	+0.4
931,448	-		GFF934	0.76	+1.2
931,475	+		GFF934	0.77	+1.0
931,475	+		GFF934	0.77	-0.5
931,497	+		GFF934	0.78	+1.0
931,506	+		GFF934	0.78	+0.6
931,564	+		GFF934	0.81	-0.9
931,572	-		GFF934	0.81	-0.9
931,587	+		GFF934	0.82	-0.9
931,608	-		GFF934	0.83	-1.0
931,609	+		GFF934	0.83	+0.3
931,622	-		GFF934	0.84	+1.0
931,632	+		GFF934	0.84	-0.9
931,697	+		GFF934	0.87	+0.5
931,705	-		GFF934	0.88	-0.8
931,705	-		GFF934	0.88	-0.3
931,747	-		GFF934	0.90	+0.1
931,748	-		GFF934	0.90	-0.7
931,771	-				-0.3
931,820	-				-0.6
931,824	+				+0.0
931,824	+				+1.8
931,824	+				-0.1
931,824	+				+1.2
931,829	+				-0.5
931,832	-				-0.5
931,837	-				+0.2
931,841	+				+0.2
931,841	+				-0.1
931,849	-				+0.2
931,849	-				+0.5
931,859	+				-0.2
931,866	+				-0.9
931,897	+				+0.3
931,898	-				-0.3
931,913	+				-0.1
931,956	-				-0.2
931,956	-				+0.2
931,975	-				-0.7
931,978	-				-1.8
932,015	+				+0.4
932,028	-				-0.6
932,035	-				+0.5
932,042	+				-0.8
932,066	-		GFF935	0.10	+0.0
932,103	-		GFF935	0.17	+0.8
932,105	-		GFF935	0.18	+0.1
932,108	+		GFF935	0.18	+0.5
932,116	-		GFF935	0.20	-0.7
932,134	-		GFF935	0.23	+0.8
932,148	-		GFF935	0.26	+0.3
932,180	+		GFF935	0.31	+0.4
932,186	+		GFF935	0.33	-1.8
932,186	+		GFF935	0.33	+0.3
932,194	-		GFF935	0.34	+0.2
932,198	+		GFF935	0.35	+1.3
932,229	-		GFF935	0.41	+1.4
932,247	+		GFF935	0.44	+0.7
932,247	+		GFF935	0.44	+0.6
932,247	+		GFF935	0.44	-1.1
932,259	+		GFF935	0.46	-0.8
932,272	-		GFF935	0.48	-0.5
932,294	-		GFF935	0.52	+1.3
932,296	+		GFF935	0.53	+1.9
932,468	+		GFF935	0.85	+0.6
932,471	+		GFF935	0.85	+0.7
932,479	-		GFF935	0.87	-0.5
932,479	-		GFF935	0.87	-0.6
932,499	+				+0.4
932,499	+				-0.1
932,504	+				+0.5
932,518	+				-0.2
932,518	+				+0.8
932,519	+				-2.3
932,519	+				+0.0
932,519	+				+0.9
932,519	+				+0.4
932,527	-				+0.6
932,527	-				-0.2
932,527	-				-1.1
932,527	-				+0.3
932,529	+				-0.1
932,529	+				+0.7
932,529	+				+0.1
932,537	-				+1.2
932,537	-				-0.9
932,537	-				-0.0
932,537	-				+1.2
932,537	-				+0.5
932,537	-				-0.4
932,552	+				+0.2
932,602	-				+1.6
932,668	-				+1.5
932,703	+				+0.8
932,713	+				+2.2
932,713	+				-0.7
932,713	+				-0.5
932,713	+				-0.6
932,713	+				-0.3
932,713	+				-1.5
932,713	+				+1.2
932,721	-				+0.7
932,721	-				+0.7
932,721	-				-1.5
932,762	+		GFF936	0.14	-0.3
932,832	+		GFF936	0.30	+0.2
932,832	+		GFF936	0.30	-0.8
932,832	+		GFF936	0.30	+0.0
932,832	+		GFF936	0.30	+0.1
932,832	+		GFF936	0.30	-0.1
932,832	+		GFF936	0.30	-0.4
932,840	-		GFF936	0.32	+2.1
932,854	-		GFF936	0.35	-0.9
932,863	+		GFF936	0.37	+0.4
932,864	-		GFF936	0.37	+1.4
932,864	-		GFF936	0.37	+0.4
932,864	-		GFF936	0.37	+1.8
932,871	+		GFF936	0.39	-1.0
932,879	-		GFF936	0.41	+0.7
932,889	+		GFF936	0.43	+1.0
932,890	+		GFF936	0.43	-0.8
932,890	+		GFF936	0.43	-0.4
932,890	+		GFF936	0.43	-0.6
932,890	+		GFF936	0.43	-1.1
932,892	+		GFF936	0.44	-0.6
932,897	-		GFF936	0.45	+0.9
932,898	-		GFF936	0.45	+0.4
932,898	-		GFF936	0.45	-1.0
932,898	-		GFF936	0.45	-1.5
932,902	-		GFF936	0.46	+0.8
932,902	-		GFF936	0.46	+1.7
932,920	+		GFF936	0.50	-0.1
932,928	-		GFF936	0.52	-1.8
932,928	-		GFF936	0.52	-0.2
932,929	-		GFF936	0.52	-0.3
932,953	+		GFF936	0.57	+0.5
932,964	-		GFF936	0.60	+0.4
932,971	-		GFF936	0.61	+1.5
932,987	-		GFF936	0.65	+2.0
933,012	-		GFF936	0.71	+0.6
933,045	+		GFF936	0.78	-2.4
933,045	+		GFF936	0.78	-0.4
933,047	-		GFF936	0.79	-1.3
933,071	+		GFF936	0.84	-0.4
933,071	+		GFF936	0.84	+1.2
933,081	+		GFF936	0.86	-0.5
933,081	+		GFF936	0.86	+1.5
933,081	+		GFF936	0.86	-0.2
933,089	-		GFF936	0.88	-0.4
933,094	+		GFF936	0.89	+1.2
933,094	-		GFF936	0.89	+0.9
933,118	+				-1.5
933,123	+				-0.8
933,155	+				-0.1
933,161	-				-0.1
933,169	+				-0.4
933,179	+				+1.7
933,179	+				-1.1
933,179	+				-1.0
933,187	-				-0.4
933,187	-				-0.0
933,187	-				-1.5
933,210	-				-1.2
933,225	+				-0.2
933,233	-				+0.3
933,233	-				-0.3
933,238	-				+0.0
933,238	-				-0.5
933,259	-				-1.1
933,259	-				+1.0
933,265	+				-2.1
933,269	-				+1.5
933,319	+				+1.1
933,319	+				-0.6
933,327	-				-0.1
933,354	+		GFF937	0.11	-0.9
933,354	+		GFF937	0.11	-0.5
933,381	+		GFF937	0.15	-0.1
933,389	-		GFF937	0.16	+0.7
933,394	-		GFF937	0.17	+2.0
933,428	+		GFF937	0.22	-0.9
933,436	-		GFF937	0.23	+0.1
933,448	-		GFF937	0.25	-0.6
933,471	+		GFF937	0.28	-3.0
933,471	+		GFF937	0.28	-0.5
933,479	-		GFF937	0.30	-0.8
933,479	-		GFF937	0.30	-1.9
933,484	-		GFF937	0.30	-1.0
933,484	-		GFF937	0.30	-1.4
933,515	-		GFF937	0.35	+0.1
933,517	+		GFF937	0.35	-0.1
933,523	+		GFF937	0.36	-1.5
933,531	-		GFF937	0.37	-1.3
933,541	+		GFF937	0.39	-0.4
933,541	+		GFF937	0.39	-0.2