Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF814 and GFF815 are separated by 229 nucleotides GFF815 and GFF816 overlap by 7 nucleotides
GFF814 - Adenylosuccinate synthetase (EC 6.3.4.4), at 802,141 to 803,430
GFF814
GFF815 - Esterase/lipase, at 803,660 to 804,520
GFF815
GFF816 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 804,514 to 805,644
GFF816
Position (kb) 803
804
805 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 802.661 kb on + strand, within GFF814 at 802.669 kb on + strand, within GFF814 at 802.674 kb on + strand, within GFF814 at 802.674 kb on + strand, within GFF814 at 802.676 kb on - strand, within GFF814 at 802.682 kb on - strand, within GFF814 at 802.682 kb on - strand, within GFF814 at 802.684 kb on + strand, within GFF814 at 802.694 kb on + strand, within GFF814 at 802.694 kb on + strand, within GFF814 at 802.706 kb on + strand, within GFF814 at 802.714 kb on - strand, within GFF814 at 802.714 kb on - strand, within GFF814 at 802.745 kb on + strand, within GFF814 at 802.754 kb on + strand, within GFF814 at 802.769 kb on + strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.777 kb on - strand, within GFF814 at 802.779 kb on + strand, within GFF814 at 802.779 kb on - strand, within GFF814 at 802.783 kb on - strand, within GFF814 at 802.812 kb on + strand, within GFF814 at 802.817 kb on + strand, within GFF814 at 802.820 kb on - strand, within GFF814 at 802.825 kb on - strand, within GFF814 at 802.835 kb on - strand, within GFF814 at 802.835 kb on - strand, within GFF814 at 802.837 kb on + strand, within GFF814 at 802.845 kb on - strand, within GFF814 at 802.845 kb on - strand, within GFF814 at 802.868 kb on - strand, within GFF814 at 802.871 kb on + strand, within GFF814 at 802.871 kb on + strand, within GFF814 at 802.879 kb on - strand, within GFF814 at 802.879 kb on - strand, within GFF814 at 802.891 kb on + strand, within GFF814 at 802.928 kb on - strand, within GFF814 at 802.941 kb on + strand, within GFF814 at 802.964 kb on - strand, within GFF814 at 802.987 kb on + strand, within GFF814 at 803.009 kb on + strand, within GFF814 at 803.009 kb on + strand, within GFF814 at 803.017 kb on - strand, within GFF814 at 803.017 kb on - strand, within GFF814 at 803.017 kb on - strand, within GFF814 at 803.043 kb on + strand, within GFF814 at 803.048 kb on + strand, within GFF814 at 803.056 kb on - strand, within GFF814 at 803.061 kb on - strand, within GFF814 at 803.075 kb on + strand, within GFF814 at 803.101 kb on + strand, within GFF814 at 803.108 kb on + strand, within GFF814 at 803.108 kb on + strand, within GFF814 at 803.125 kb on + strand, within GFF814 at 803.171 kb on + strand, within GFF814 at 803.171 kb on + strand, within GFF814 at 803.171 kb on + strand, within GFF814 at 803.172 kb on - strand, within GFF814 at 803.179 kb on + strand, within GFF814 at 803.179 kb on - strand, within GFF814 at 803.179 kb on - strand, within GFF814 at 803.179 kb on - strand, within GFF814 at 803.179 kb on - strand, within GFF814 at 803.179 kb on - strand, within GFF814 at 803.190 kb on + strand, within GFF814 at 803.199 kb on + strand, within GFF814 at 803.209 kb on + strand, within GFF814 at 803.209 kb on - strand, within GFF814 at 803.217 kb on - strand, within GFF814 at 803.269 kb on - strand, within GFF814 at 803.286 kb on - strand, within GFF814 at 803.287 kb on - strand, within GFF814 at 803.396 kb on + strand at 803.431 kb on + strand at 803.433 kb on + strand at 803.448 kb on - strand at 803.457 kb on + strand at 803.461 kb on + strand at 803.462 kb on + strand at 803.462 kb on + strand at 803.462 kb on + strand at 803.462 kb on + strand at 803.462 kb on + strand at 803.470 kb on - strand at 803.470 kb on - strand at 803.473 kb on + strand at 803.478 kb on + strand at 803.511 kb on + strand at 803.516 kb on + strand at 803.516 kb on + strand at 803.518 kb on - strand at 803.521 kb on + strand at 803.524 kb on - strand at 803.534 kb on - strand at 803.549 kb on - strand at 803.562 kb on + strand at 803.570 kb on - strand at 803.570 kb on - strand at 803.571 kb on + strand at 803.579 kb on - strand at 803.587 kb on - strand at 803.590 kb on + strand at 803.726 kb on - strand at 803.733 kb on - strand at 803.733 kb on - strand at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.752 kb on + strand, within GFF815 at 803.760 kb on - strand, within GFF815 at 803.760 kb on - strand, within GFF815 at 803.814 kb on - strand, within GFF815 at 803.832 kb on - strand, within GFF815 at 803.896 kb on + strand, within GFF815 at 803.897 kb on - strand, within GFF815 at 803.904 kb on - strand, within GFF815 at 803.904 kb on - strand, within GFF815 at 803.924 kb on + strand, within GFF815 at 803.958 kb on + strand, within GFF815 at 803.960 kb on + strand, within GFF815 at 803.972 kb on + strand, within GFF815 at 803.999 kb on + strand, within GFF815 at 804.022 kb on + strand, within GFF815 at 804.040 kb on - strand, within GFF815 at 804.047 kb on + strand, within GFF815 at 804.064 kb on - strand, within GFF815 at 804.069 kb on + strand, within GFF815 at 804.074 kb on + strand, within GFF815 at 804.088 kb on + strand, within GFF815 at 804.088 kb on + strand, within GFF815 at 804.088 kb on + strand, within GFF815 at 804.093 kb on + strand, within GFF815 at 804.096 kb on - strand, within GFF815 at 804.096 kb on - strand, within GFF815 at 804.096 kb on - strand, within GFF815 at 804.124 kb on + strand, within GFF815 at 804.126 kb on - strand, within GFF815 at 804.138 kb on - strand, within GFF815 at 804.145 kb on - strand, within GFF815 at 804.160 kb on + strand, within GFF815 at 804.178 kb on - strand, within GFF815 at 804.184 kb on + strand, within GFF815 at 804.187 kb on - strand, within GFF815 at 804.276 kb on - strand, within GFF815 at 804.285 kb on + strand, within GFF815 at 804.300 kb on - strand, within GFF815 at 804.316 kb on + strand, within GFF815 at 804.324 kb on - strand, within GFF815 at 804.324 kb on - strand, within GFF815 at 804.324 kb on - strand, within GFF815 at 804.339 kb on + strand, within GFF815 at 804.344 kb on + strand, within GFF815 at 804.344 kb on + strand, within GFF815 at 804.347 kb on - strand, within GFF815 at 804.347 kb on - strand, within GFF815 at 804.349 kb on + strand, within GFF815 at 804.349 kb on + strand, within GFF815 at 804.349 kb on + strand, within GFF815 at 804.352 kb on - strand, within GFF815 at 804.352 kb on - strand, within GFF815 at 804.357 kb on - strand, within GFF815 at 804.357 kb on - strand, within GFF815 at 804.357 kb on - strand, within GFF815 at 804.357 kb on - strand, within GFF815 at 804.373 kb on + strand, within GFF815 at 804.381 kb on - strand, within GFF815 at 804.381 kb on - strand, within GFF815 at 804.381 kb on - strand, within GFF815 at 804.382 kb on + strand, within GFF815 at 804.407 kb on - strand, within GFF815 at 804.407 kb on - strand, within GFF815 at 804.409 kb on + strand, within GFF815 at 804.417 kb on - strand, within GFF815 at 804.417 kb on - strand, within GFF815 at 804.422 kb on - strand, within GFF815 at 804.429 kb on + strand, within GFF815 at 804.429 kb on + strand, within GFF815 at 804.429 kb on + strand, within GFF815 at 804.432 kb on - strand, within GFF815 at 804.437 kb on - strand at 804.437 kb on - strand at 804.437 kb on - strand at 804.437 kb on - strand at 804.437 kb on - strand at 804.497 kb on - strand at 804.497 kb on - strand at 804.513 kb on + strand at 804.536 kb on - strand at 804.537 kb on + strand at 804.546 kb on + strand at 804.546 kb on + strand at 804.556 kb on + strand at 804.556 kb on + strand at 804.559 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.564 kb on - strand at 804.571 kb on + strand at 804.589 kb on + strand at 804.591 kb on - strand at 804.596 kb on + strand at 804.597 kb on - strand at 804.597 kb on - strand at 804.629 kb on - strand, within GFF816 at 804.653 kb on + strand, within GFF816 at 804.661 kb on - strand, within GFF816 at 804.697 kb on + strand, within GFF816 at 804.757 kb on + strand, within GFF816 at 804.774 kb on - strand, within GFF816 at 804.794 kb on + strand, within GFF816 at 804.832 kb on + strand, within GFF816 at 804.861 kb on + strand, within GFF816 at 804.861 kb on + strand, within GFF816 at 804.861 kb on + strand, within GFF816 at 804.861 kb on + strand, within GFF816 at 804.867 kb on + strand, within GFF816 at 804.868 kb on + strand, within GFF816 at 804.869 kb on - strand, within GFF816 at 804.869 kb on - strand, within GFF816 at 804.869 kb on - strand, within GFF816 at 804.876 kb on - strand, within GFF816 at 804.933 kb on - strand, within GFF816 at 804.938 kb on - strand, within GFF816 at 804.948 kb on - strand, within GFF816 at 804.960 kb on + strand, within GFF816 at 804.968 kb on - strand, within GFF816 at 804.988 kb on - strand, within GFF816 at 804.993 kb on - strand, within GFF816 at 804.998 kb on + strand, within GFF816 at 805.093 kb on - strand, within GFF816 at 805.144 kb on + strand, within GFF816 at 805.145 kb on + strand, within GFF816 at 805.148 kb on - strand, within GFF816 at 805.148 kb on - strand, within GFF816 at 805.148 kb on - strand, within GFF816 at 805.151 kb on + strand, within GFF816 at 805.283 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.322 kb on + strand, within GFF816 at 805.330 kb on - strand, within GFF816 at 805.354 kb on + strand, within GFF816 at 805.371 kb on - strand, within GFF816 at 805.376 kb on + strand, within GFF816 at 805.384 kb on - strand, within GFF816 at 805.439 kb on + strand, within GFF816 at 805.444 kb on + strand, within GFF816 at 805.444 kb on + strand, within GFF816 at 805.474 kb on - strand, within GFF816 at 805.479 kb on + strand, within GFF816 at 805.479 kb on + strand, within GFF816 at 805.487 kb on - strand, within GFF816 at 805.488 kb on - strand, within GFF816 at 805.493 kb on - strand, within GFF816 at 805.519 kb on - strand, within GFF816
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 802,661 + GFF814 0.40 -1.0 802,669 + GFF814 0.41 -1.0 802,674 + GFF814 0.41 -1.2 802,674 + GFF814 0.41 -1.5 802,676 - GFF814 0.41 -2.1 802,682 - GFF814 0.42 +1.2 802,682 - GFF814 0.42 -0.7 802,684 + GFF814 0.42 -2.4 802,694 + GFF814 0.43 +1.5 802,694 + GFF814 0.43 -0.1 802,706 + GFF814 0.44 -0.3 802,714 - GFF814 0.44 -1.6 802,714 - GFF814 0.44 -0.9 802,745 + GFF814 0.47 +0.3 802,754 + GFF814 0.48 -1.0 802,769 + GFF814 0.49 +0.2 802,777 - GFF814 0.49 -1.2 802,777 - GFF814 0.49 -1.0 802,777 - GFF814 0.49 -1.6 802,777 - GFF814 0.49 -0.8 802,777 - GFF814 0.49 -1.2 802,779 + GFF814 0.49 -0.6 802,779 - GFF814 0.49 -2.1 802,783 - GFF814 0.50 +0.3 802,812 + GFF814 0.52 -1.6 802,817 + GFF814 0.52 -1.2 802,820 - GFF814 0.53 -0.5 802,825 - GFF814 0.53 -1.0 802,835 - GFF814 0.54 -1.0 802,835 - GFF814 0.54 -1.1 802,837 + GFF814 0.54 -1.2 802,845 - GFF814 0.55 -1.2 802,845 - GFF814 0.55 +0.7 802,868 - GFF814 0.56 +0.0 802,871 + GFF814 0.57 +0.3 802,871 + GFF814 0.57 -2.3 802,879 - GFF814 0.57 +0.5 802,879 - GFF814 0.57 -1.0 802,891 + GFF814 0.58 -1.9 802,928 - GFF814 0.61 +1.2 802,941 + GFF814 0.62 -0.5 802,964 - GFF814 0.64 +1.2 802,987 + GFF814 0.66 -0.1 803,009 + GFF814 0.67 +0.3 803,009 + GFF814 0.67 -1.0 803,017 - GFF814 0.68 +1.5 803,017 - GFF814 0.68 -1.3 803,017 - GFF814 0.68 -1.5 803,043 + GFF814 0.70 -0.3 803,048 + GFF814 0.70 -0.1 803,056 - GFF814 0.71 -0.3 803,061 - GFF814 0.71 -1.2 803,075 + GFF814 0.72 -0.9 803,101 + GFF814 0.74 -0.2 803,108 + GFF814 0.75 -0.3 803,108 + GFF814 0.75 -1.0 803,125 + GFF814 0.76 -1.5 803,171 + GFF814 0.80 -1.5 803,171 + GFF814 0.80 -0.2 803,171 + GFF814 0.80 -0.5 803,172 - GFF814 0.80 +0.0 803,179 + GFF814 0.80 +0.3 803,179 - GFF814 0.80 -0.4 803,179 - GFF814 0.80 +0.5 803,179 - GFF814 0.80 -1.5 803,179 - GFF814 0.80 -2.2 803,179 - GFF814 0.80 -1.3 803,190 + GFF814 0.81 -0.8 803,199 + GFF814 0.82 -0.3 803,209 + GFF814 0.83 -0.4 803,209 - GFF814 0.83 -0.2 803,217 - GFF814 0.83 -1.1 803,269 - GFF814 0.87 -1.2 803,286 - GFF814 0.89 -0.7 803,287 - GFF814 0.89 -1.2 803,396 + -1.1 803,431 + -0.2 803,433 + -0.1 803,448 - -0.7 803,457 + +0.0 803,461 + -0.2 803,462 + -2.4 803,462 + -1.9 803,462 + -1.0 803,462 + -1.8 803,462 + -0.8 803,470 - +0.9 803,470 - -1.8 803,473 + -0.3 803,478 + -0.7 803,511 + +0.1 803,516 + +0.2 803,516 + -0.4 803,518 - -0.2 803,521 + -1.5 803,524 - +2.5 803,534 - +0.0 803,549 - -0.0 803,562 + -1.3 803,570 - -1.4 803,570 - +0.9 803,571 + -0.3 803,579 - +2.5 803,587 - +1.2 803,590 + +0.0 803,726 - +0.8 803,733 - +2.1 803,733 - +0.3 803,752 + GFF815 0.11 +0.1 803,752 + GFF815 0.11 -0.7 803,752 + GFF815 0.11 -0.4 803,752 + GFF815 0.11 +1.2 803,752 + GFF815 0.11 +0.7 803,752 + GFF815 0.11 -0.2 803,760 - GFF815 0.12 +0.3 803,760 - GFF815 0.12 -0.2 803,814 - GFF815 0.18 +0.0 803,832 - GFF815 0.20 -1.1 803,896 + GFF815 0.27 +1.0 803,897 - GFF815 0.28 -0.1 803,904 - GFF815 0.28 -1.2 803,904 - GFF815 0.28 +0.2 803,924 + GFF815 0.31 -0.4 803,958 + GFF815 0.35 -0.7 803,960 + GFF815 0.35 -1.4 803,972 + GFF815 0.36 -0.2 803,999 + GFF815 0.39 +1.4 804,022 + GFF815 0.42 +1.6 804,040 - GFF815 0.44 +0.7 804,047 + GFF815 0.45 -0.3 804,064 - GFF815 0.47 +0.8 804,069 + GFF815 0.48 -1.3 804,074 + GFF815 0.48 +0.7 804,088 + GFF815 0.50 +0.2 804,088 + GFF815 0.50 -0.3 804,088 + GFF815 0.50 -0.7 804,093 + GFF815 0.50 +0.8 804,096 - GFF815 0.51 -1.0 804,096 - GFF815 0.51 +0.2 804,096 - GFF815 0.51 -0.7 804,124 + GFF815 0.54 +1.6 804,126 - GFF815 0.54 -1.9 804,138 - GFF815 0.56 +0.2 804,145 - GFF815 0.56 +0.1 804,160 + GFF815 0.58 -1.7 804,178 - GFF815 0.60 -0.5 804,184 + GFF815 0.61 +0.4 804,187 - GFF815 0.61 -1.1 804,276 - GFF815 0.72 -0.9 804,285 + GFF815 0.73 +1.4 804,300 - GFF815 0.74 -0.3 804,316 + GFF815 0.76 -0.1 804,324 - GFF815 0.77 +0.6 804,324 - GFF815 0.77 +1.0 804,324 - GFF815 0.77 -3.1 804,339 + GFF815 0.79 -0.0 804,344 + GFF815 0.79 -1.7 804,344 + GFF815 0.79 +1.0 804,347 - GFF815 0.80 +0.7 804,347 - GFF815 0.80 -0.6 804,349 + GFF815 0.80 +1.1 804,349 + GFF815 0.80 +0.3 804,349 + GFF815 0.80 -1.6 804,352 - GFF815 0.80 -1.3 804,352 - GFF815 0.80 -2.5 804,357 - GFF815 0.81 +0.9 804,357 - GFF815 0.81 -0.4 804,357 - GFF815 0.81 +1.2 804,357 - GFF815 0.81 +1.4 804,373 + GFF815 0.83 +0.1 804,381 - GFF815 0.84 -0.4 804,381 - GFF815 0.84 +0.4 804,381 - GFF815 0.84 -1.5 804,382 + GFF815 0.84 +0.3 804,407 - GFF815 0.87 -1.8 804,407 - GFF815 0.87 +1.4 804,409 + GFF815 0.87 -0.3 804,417 - GFF815 0.88 +1.5 804,417 - GFF815 0.88 +1.2 804,422 - GFF815 0.89 +0.6 804,429 + GFF815 0.89 +0.9 804,429 + GFF815 0.89 -0.0 804,429 + GFF815 0.89 -1.1 804,432 - GFF815 0.90 -0.3 804,437 - +0.4 804,437 - +1.5 804,437 - +0.3 804,437 - +1.3 804,437 - +0.0 804,497 - -0.2 804,497 - +0.4 804,513 + +0.3 804,536 - -0.1 804,537 + -0.9 804,546 + -0.3 804,546 + -0.4 804,556 + -2.0 804,556 + -1.5 804,559 - -1.2 804,564 - +0.3 804,564 - -1.9 804,564 - +1.2 804,564 - -3.1 804,564 - -2.2 804,564 - -1.9 804,564 - -1.4 804,564 - -1.6 804,571 + -0.5 804,589 + -1.5 804,591 - -2.0 804,596 + -2.6 804,597 - -1.0 804,597 - -1.7 804,629 - GFF816 0.10 -0.2 804,653 + GFF816 0.12 -1.3 804,661 - GFF816 0.13 +0.2 804,697 + GFF816 0.16 -1.2 804,757 + GFF816 0.21 -0.7 804,774 - GFF816 0.23 -0.6 804,794 + GFF816 0.25 -1.0 804,832 + GFF816 0.28 -0.1 804,861 + GFF816 0.31 -1.5 804,861 + GFF816 0.31 -0.8 804,861 + GFF816 0.31 -1.9 804,861 + GFF816 0.31 +0.7 804,867 + GFF816 0.31 -0.4 804,868 + GFF816 0.31 -1.1 804,869 - GFF816 0.31 -1.5 804,869 - GFF816 0.31 -1.9 804,869 - GFF816 0.31 -1.5 804,876 - GFF816 0.32 -0.8 804,933 - GFF816 0.37 -0.2 804,938 - GFF816 0.37 -1.6 804,948 - GFF816 0.38 -1.6 804,960 + GFF816 0.39 +0.7 804,968 - GFF816 0.40 -0.1 804,988 - GFF816 0.42 -1.2 804,993 - GFF816 0.42 -2.4 804,998 + GFF816 0.43 -2.6 805,093 - GFF816 0.51 -1.0 805,144 + GFF816 0.56 -1.8 805,145 + GFF816 0.56 -2.9 805,148 - GFF816 0.56 +0.9 805,148 - GFF816 0.56 -0.5 805,148 - GFF816 0.56 -1.8 805,151 + GFF816 0.56 -1.8 805,283 + GFF816 0.68 -0.7 805,322 + GFF816 0.71 -1.8 805,322 + GFF816 0.71 -0.8 805,322 + GFF816 0.71 -1.5 805,322 + GFF816 0.71 -0.6 805,322 + GFF816 0.71 -1.6 805,330 - GFF816 0.72 -2.0 805,354 + GFF816 0.74 -1.0 805,371 - GFF816 0.76 -2.4 805,376 + GFF816 0.76 -1.1 805,384 - GFF816 0.77 -1.5 805,439 + GFF816 0.82 -1.5 805,444 + GFF816 0.82 -0.7 805,444 + GFF816 0.82 -0.7 805,474 - GFF816 0.85 -1.3 805,479 + GFF816 0.85 -1.8 805,479 + GFF816 0.85 +0.0 805,487 - GFF816 0.86 -2.5 805,488 - GFF816 0.86 +0.9 805,493 - GFF816 0.87 -0.7 805,519 - GFF816 0.89 -0.9
Or see this region's nucleotide sequence