Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF658 and GFF659 are separated by 91 nucleotides GFF659 and GFF660 are separated by 2 nucleotides GFF660 and GFF661 are separated by 6 nucleotides GFF661 and GFF662 are separated by 82 nucleotides GFF662 and GFF663 are separated by 125 nucleotides
GFF658 - DinG family ATP-dependent helicase YoaA, at 656,128 to 658,881
GFF658
GFF659 - Phosphohistidine phosphatase SixA, at 658,973 to 659,515
GFF659
GFF660 - Acetyltransferase, GNAT family, at 659,518 to 660,042
GFF660
GFF661 - Transcriptional regulator PA2737, MerR family, at 660,049 to 660,393
GFF661
GFF662 - Integration host factor alpha subunit, at 660,476 to 660,772
GFF662
GFF663 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180), at 660,898 to 661,863
GFF663
Position (kb) 659
660
661 Strain fitness (log2 ratio) -2
-1
0
1
2 at 658.536 kb on + strand, within GFF658 at 658.544 kb on - strand, within GFF658 at 658.548 kb on + strand, within GFF658 at 658.551 kb on - strand, within GFF658 at 658.551 kb on - strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.553 kb on + strand, within GFF658 at 658.556 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.561 kb on - strand, within GFF658 at 658.567 kb on + strand, within GFF658 at 658.596 kb on + strand, within GFF658 at 658.607 kb on + strand at 658.609 kb on + strand at 658.614 kb on - strand at 658.626 kb on - strand at 658.667 kb on - strand at 658.667 kb on - strand at 658.670 kb on + strand at 658.678 kb on - strand at 658.680 kb on + strand at 658.693 kb on + strand at 658.698 kb on + strand at 658.715 kb on + strand at 658.716 kb on - strand at 658.767 kb on + strand at 658.775 kb on - strand at 658.820 kb on + strand at 658.820 kb on + strand at 658.820 kb on + strand at 658.828 kb on - strand at 658.828 kb on - strand at 658.828 kb on - strand at 658.828 kb on - strand at 658.833 kb on - strand at 658.843 kb on + strand at 658.843 kb on + strand at 658.843 kb on + strand at 658.844 kb on + strand at 658.851 kb on - strand at 658.852 kb on + strand at 658.852 kb on + strand at 658.852 kb on - strand at 658.852 kb on - strand at 658.875 kb on + strand at 658.886 kb on + strand at 658.888 kb on - strand at 658.889 kb on + strand at 658.889 kb on + strand at 658.897 kb on - strand at 658.897 kb on - strand at 658.907 kb on - strand at 658.931 kb on - strand at 658.959 kb on + strand at 658.961 kb on + strand at 658.961 kb on + strand at 658.980 kb on + strand at 658.988 kb on + strand at 658.988 kb on + strand at 658.988 kb on - strand at 658.996 kb on - strand at 659.013 kb on + strand at 659.014 kb on + strand at 659.075 kb on + strand, within GFF659 at 659.077 kb on + strand, within GFF659 at 659.105 kb on + strand, within GFF659 at 659.113 kb on - strand, within GFF659 at 659.133 kb on + strand, within GFF659 at 659.150 kb on + strand, within GFF659 at 659.158 kb on + strand, within GFF659 at 659.201 kb on + strand, within GFF659 at 659.205 kb on + strand, within GFF659 at 659.227 kb on - strand, within GFF659 at 659.231 kb on + strand, within GFF659 at 659.231 kb on + strand, within GFF659 at 659.231 kb on + strand, within GFF659 at 659.245 kb on - strand, within GFF659 at 659.302 kb on - strand, within GFF659 at 659.334 kb on + strand, within GFF659 at 659.340 kb on - strand, within GFF659 at 659.340 kb on - strand, within GFF659 at 659.347 kb on + strand, within GFF659 at 659.374 kb on - strand, within GFF659 at 659.374 kb on - strand, within GFF659 at 659.374 kb on - strand, within GFF659 at 659.394 kb on + strand, within GFF659 at 659.415 kb on + strand, within GFF659 at 659.428 kb on - strand, within GFF659 at 659.440 kb on + strand, within GFF659 at 659.446 kb on + strand, within GFF659 at 659.446 kb on + strand, within GFF659 at 659.456 kb on + strand, within GFF659 at 659.456 kb on + strand, within GFF659 at 659.456 kb on + strand, within GFF659 at 659.464 kb on - strand at 659.471 kb on - strand at 659.474 kb on - strand at 659.507 kb on - strand at 659.514 kb on + strand at 659.514 kb on + strand at 659.514 kb on + strand at 659.514 kb on + strand at 659.517 kb on - strand at 659.522 kb on - strand at 659.522 kb on - strand at 659.522 kb on - strand at 659.535 kb on - strand at 659.553 kb on - strand at 659.556 kb on - strand at 659.583 kb on - strand, within GFF660 at 659.603 kb on + strand, within GFF660 at 659.603 kb on + strand, within GFF660 at 659.603 kb on + strand, within GFF660 at 659.608 kb on + strand, within GFF660 at 659.608 kb on + strand, within GFF660 at 659.608 kb on + strand, within GFF660 at 659.608 kb on + strand, within GFF660 at 659.611 kb on - strand, within GFF660 at 659.611 kb on - strand, within GFF660 at 659.616 kb on - strand, within GFF660 at 659.616 kb on - strand, within GFF660 at 659.616 kb on - strand, within GFF660 at 659.626 kb on - strand, within GFF660 at 659.646 kb on - strand, within GFF660 at 659.665 kb on + strand, within GFF660 at 659.665 kb on + strand, within GFF660 at 659.667 kb on + strand, within GFF660 at 659.667 kb on + strand, within GFF660 at 659.673 kb on - strand, within GFF660 at 659.673 kb on - strand, within GFF660 at 659.675 kb on + strand, within GFF660 at 659.695 kb on + strand, within GFF660 at 659.704 kb on + strand, within GFF660 at 659.708 kb on - strand, within GFF660 at 659.712 kb on - strand, within GFF660 at 659.712 kb on - strand, within GFF660 at 659.712 kb on - strand, within GFF660 at 659.722 kb on + strand, within GFF660 at 659.730 kb on - strand, within GFF660 at 659.734 kb on + strand, within GFF660 at 659.734 kb on + strand, within GFF660 at 659.740 kb on - strand, within GFF660 at 659.741 kb on + strand, within GFF660 at 659.741 kb on + strand, within GFF660 at 659.742 kb on - strand, within GFF660 at 659.749 kb on - strand, within GFF660 at 659.749 kb on - strand, within GFF660 at 659.754 kb on - strand, within GFF660 at 659.789 kb on + strand, within GFF660 at 659.836 kb on - strand, within GFF660 at 659.859 kb on + strand, within GFF660 at 659.863 kb on + strand, within GFF660 at 659.864 kb on + strand, within GFF660 at 659.872 kb on - strand, within GFF660 at 659.872 kb on - strand, within GFF660 at 659.874 kb on + strand, within GFF660 at 659.915 kb on - strand, within GFF660 at 659.940 kb on - strand, within GFF660 at 659.956 kb on + strand, within GFF660 at 659.957 kb on + strand, within GFF660 at 659.968 kb on + strand, within GFF660 at 659.987 kb on + strand, within GFF660 at 660.012 kb on - strand at 660.017 kb on + strand at 660.037 kb on + strand at 660.054 kb on + strand at 660.055 kb on + strand at 660.081 kb on + strand at 660.094 kb on - strand, within GFF661 at 660.106 kb on - strand, within GFF661 at 660.120 kb on + strand, within GFF661 at 660.164 kb on + strand, within GFF661 at 660.204 kb on - strand, within GFF661 at 660.206 kb on - strand, within GFF661 at 660.211 kb on - strand, within GFF661 at 660.211 kb on - strand, within GFF661 at 660.211 kb on - strand, within GFF661 at 660.248 kb on + strand, within GFF661 at 660.249 kb on + strand, within GFF661 at 660.257 kb on - strand, within GFF661 at 660.257 kb on - strand, within GFF661 at 660.337 kb on + strand, within GFF661 at 660.342 kb on + strand, within GFF661 at 660.364 kb on + strand at 660.372 kb on - strand at 660.401 kb on + strand at 660.401 kb on + strand at 660.401 kb on + strand at 660.479 kb on + strand at 660.479 kb on + strand at 660.484 kb on + strand at 660.492 kb on - strand at 660.762 kb on + strand at 660.787 kb on - strand at 660.792 kb on + strand at 660.795 kb on - strand at 660.803 kb on - strand at 660.803 kb on - strand at 660.818 kb on - strand at 660.818 kb on - strand at 660.818 kb on - strand at 660.841 kb on + strand at 660.862 kb on + strand at 660.862 kb on + strand at 660.862 kb on + strand at 660.870 kb on - strand at 660.870 kb on - strand at 660.870 kb on - strand at 660.870 kb on - strand at 660.875 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 658,536 + GFF658 0.87 -0.1 658,544 - GFF658 0.88 -1.2 658,548 + GFF658 0.88 +0.0 658,551 - GFF658 0.88 -0.8 658,551 - GFF658 0.88 -1.1 658,553 + GFF658 0.88 -2.5 658,553 + GFF658 0.88 +0.3 658,553 + GFF658 0.88 +0.2 658,553 + GFF658 0.88 -0.7 658,553 + GFF658 0.88 +0.5 658,553 + GFF658 0.88 +0.2 658,553 + GFF658 0.88 +0.3 658,553 + GFF658 0.88 +1.0 658,553 + GFF658 0.88 -0.9 658,553 + GFF658 0.88 -0.5 658,553 + GFF658 0.88 -0.3 658,553 + GFF658 0.88 -1.3 658,553 + GFF658 0.88 +0.0 658,553 + GFF658 0.88 -1.5 658,553 + GFF658 0.88 +0.1 658,553 + GFF658 0.88 +0.3 658,553 + GFF658 0.88 -1.1 658,556 - GFF658 0.88 +0.5 658,561 - GFF658 0.88 -1.7 658,561 - GFF658 0.88 -0.8 658,561 - GFF658 0.88 -1.0 658,561 - GFF658 0.88 -1.0 658,561 - GFF658 0.88 -1.1 658,561 - GFF658 0.88 -0.3 658,561 - GFF658 0.88 +0.5 658,561 - GFF658 0.88 -0.7 658,561 - GFF658 0.88 -0.5 658,567 + GFF658 0.89 -1.3 658,596 + GFF658 0.90 +0.5 658,607 + +0.0 658,609 + -2.3 658,614 - +0.0 658,626 - -0.2 658,667 - -0.3 658,667 - -0.8 658,670 + -0.5 658,678 - -0.6 658,680 + +0.7 658,693 + -1.3 658,698 + -0.3 658,715 + -0.6 658,716 - +0.4 658,767 + -1.5 658,775 - -0.3 658,820 + -1.3 658,820 + -0.0 658,820 + -0.7 658,828 - -0.2 658,828 - +0.4 658,828 - -1.4 658,828 - -1.3 658,833 - +0.2 658,843 + -0.6 658,843 + -1.5 658,843 + -1.0 658,844 + -0.2 658,851 - -0.8 658,852 + -0.8 658,852 + +0.1 658,852 - +0.1 658,852 - -1.3 658,875 + -1.2 658,886 + -1.2 658,888 - +0.2 658,889 + -1.0 658,889 + -0.9 658,897 - -0.3 658,897 - -0.3 658,907 - +0.2 658,931 - -1.6 658,959 + -2.2 658,961 + -1.2 658,961 + +0.6 658,980 + -1.4 658,988 + -1.3 658,988 + -0.5 658,988 - -1.8 658,996 - -0.6 659,013 + -0.5 659,014 + -0.7 659,075 + GFF659 0.19 -1.2 659,077 + GFF659 0.19 -0.8 659,105 + GFF659 0.24 -1.3 659,113 - GFF659 0.26 -1.3 659,133 + GFF659 0.29 -1.1 659,150 + GFF659 0.33 +0.1 659,158 + GFF659 0.34 -0.1 659,201 + GFF659 0.42 -1.7 659,205 + GFF659 0.43 -0.8 659,227 - GFF659 0.47 -1.0 659,231 + GFF659 0.48 -1.5 659,231 + GFF659 0.48 +0.5 659,231 + GFF659 0.48 -1.5 659,245 - GFF659 0.50 -0.5 659,302 - GFF659 0.61 -0.6 659,334 + GFF659 0.66 +0.1 659,340 - GFF659 0.68 -1.5 659,340 - GFF659 0.68 -1.1 659,347 + GFF659 0.69 +0.5 659,374 - GFF659 0.74 -0.3 659,374 - GFF659 0.74 +0.3 659,374 - GFF659 0.74 -0.7 659,394 + GFF659 0.78 -1.7 659,415 + GFF659 0.81 +0.3 659,428 - GFF659 0.84 -0.7 659,440 + GFF659 0.86 -1.0 659,446 + GFF659 0.87 +0.5 659,446 + GFF659 0.87 +0.3 659,456 + GFF659 0.89 -1.3 659,456 + GFF659 0.89 +0.5 659,456 + GFF659 0.89 -0.6 659,464 - -1.9 659,471 - -1.1 659,474 - -1.2 659,507 - -1.6 659,514 + -1.2 659,514 + +0.8 659,514 + +0.2 659,514 + -0.3 659,517 - -0.0 659,522 - +0.7 659,522 - -0.6 659,522 - -1.4 659,535 - +1.1 659,553 - -1.2 659,556 - -0.8 659,583 - GFF660 0.12 -0.2 659,603 + GFF660 0.16 -1.5 659,603 + GFF660 0.16 +0.5 659,603 + GFF660 0.16 +1.2 659,608 + GFF660 0.17 -1.7 659,608 + GFF660 0.17 -1.0 659,608 + GFF660 0.17 -0.6 659,608 + GFF660 0.17 +0.3 659,611 - GFF660 0.18 -1.5 659,611 - GFF660 0.18 -0.8 659,616 - GFF660 0.19 -0.1 659,616 - GFF660 0.19 -0.9 659,616 - GFF660 0.19 +0.4 659,626 - GFF660 0.21 +1.0 659,646 - GFF660 0.24 -1.4 659,665 + GFF660 0.28 -0.1 659,665 + GFF660 0.28 -0.4 659,667 + GFF660 0.28 -0.1 659,667 + GFF660 0.28 -1.0 659,673 - GFF660 0.30 -1.1 659,673 - GFF660 0.30 +0.9 659,675 + GFF660 0.30 -1.3 659,695 + GFF660 0.34 +0.2 659,704 + GFF660 0.35 +0.5 659,708 - GFF660 0.36 -1.2 659,712 - GFF660 0.37 -0.2 659,712 - GFF660 0.37 -1.0 659,712 - GFF660 0.37 +0.2 659,722 + GFF660 0.39 -0.9 659,730 - GFF660 0.40 -1.4 659,734 + GFF660 0.41 -0.3 659,734 + GFF660 0.41 -0.3 659,740 - GFF660 0.42 -0.1 659,741 + GFF660 0.42 -0.6 659,741 + GFF660 0.42 -1.3 659,742 - GFF660 0.43 -1.0 659,749 - GFF660 0.44 +0.3 659,749 - GFF660 0.44 -0.6 659,754 - GFF660 0.45 -1.8 659,789 + GFF660 0.52 +0.8 659,836 - GFF660 0.61 +1.1 659,859 + GFF660 0.65 -1.2 659,863 + GFF660 0.66 -0.7 659,864 + GFF660 0.66 -0.5 659,872 - GFF660 0.67 -1.1 659,872 - GFF660 0.67 -1.7 659,874 + GFF660 0.68 -1.3 659,915 - GFF660 0.76 -0.3 659,940 - GFF660 0.80 +0.2 659,956 + GFF660 0.83 +1.3 659,957 + GFF660 0.84 -1.7 659,968 + GFF660 0.86 +0.2 659,987 + GFF660 0.89 +0.8 660,012 - -0.6 660,017 + -0.8 660,037 + -0.7 660,054 + -1.2 660,055 + +2.1 660,081 + -0.3 660,094 - GFF661 0.13 -0.2 660,106 - GFF661 0.17 -0.6 660,120 + GFF661 0.21 +0.6 660,164 + GFF661 0.33 -0.4 660,204 - GFF661 0.45 +1.0 660,206 - GFF661 0.46 -0.9 660,211 - GFF661 0.47 +0.8 660,211 - GFF661 0.47 -2.1 660,211 - GFF661 0.47 -1.9 660,248 + GFF661 0.58 -2.0 660,249 + GFF661 0.58 +1.0 660,257 - GFF661 0.60 +0.5 660,257 - GFF661 0.60 +1.5 660,337 + GFF661 0.83 +1.4 660,342 + GFF661 0.85 -1.1 660,364 + -1.0 660,372 - +1.1 660,401 + -1.1 660,401 + +0.2 660,401 + -0.8 660,479 + +0.1 660,479 + -1.0 660,484 + -0.8 660,492 - +0.2 660,762 + -0.8 660,787 - -0.3 660,792 + -0.5 660,795 - -1.9 660,803 - -0.5 660,803 - -0.4 660,818 - +0.5 660,818 - +0.0 660,818 - -1.0 660,841 + -0.3 660,862 + -0.1 660,862 + +0.4 660,862 + -0.6 660,870 - -1.2 660,870 - +1.2 660,870 - -0.5 660,870 - +0.3 660,875 - -1.8
Or see this region's nucleotide sequence