Strain Fitness in Sphingobium sp. HT1-2 around GFF613

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF611 and GFF612 are separated by 69 nucleotidesGFF612 and GFF613 are separated by 115 nucleotidesGFF613 and GFF614 overlap by 4 nucleotidesGFF614 and GFF615 are separated by 9 nucleotides GFF611 - Dehydrogenase molybdenum cofactor insertion protein, XdhC/CoxF family, at 611,785 to 612,702 GFF611 GFF612 - putative phage repressor, at 612,772 to 613,440 GFF612 GFF613 - hypothetical protein, at 613,556 to 613,741 GFF613 GFF614 - hypothetical protein, at 613,738 to 614,109 GFF614 GFF615 - hypothetical protein, at 614,119 to 615,261 GFF615 Position (kb) 613 614Strain fitness (log2 ratio) -2 -1 0 1at 612.559 kb on - strand, within GFF611at 612.564 kb on - strand, within GFF611at 612.579 kb on - strand, within GFF611at 612.625 kb on + strandat 612.630 kb on - strandat 612.630 kb on - strandat 612.633 kb on - strandat 612.633 kb on - strandat 612.633 kb on - strandat 612.633 kb on - strandat 612.633 kb on - strandat 612.634 kb on - strandat 612.640 kb on - strandat 612.640 kb on - strandat 612.689 kb on + strandat 612.711 kb on - strandat 612.770 kb on + strandat 612.770 kb on + strandat 612.778 kb on - strandat 612.778 kb on - strandat 612.781 kb on + strandat 613.542 kb on + strandat 613.542 kb on + strandat 613.542 kb on + strandat 613.545 kb on - strandat 613.547 kb on + strandat 613.550 kb on - strandat 613.555 kb on - strandat 613.555 kb on - strandat 613.556 kb on + strandat 613.556 kb on + strandat 613.564 kb on + strandat 613.569 kb on - strandat 613.601 kb on + strand, within GFF613at 613.609 kb on - strand, within GFF613at 613.609 kb on - strand, within GFF613at 613.609 kb on - strand, within GFF613at 613.647 kb on + strand, within GFF613at 613.654 kb on - strand, within GFF613at 613.655 kb on - strand, within GFF613at 613.655 kb on - strand, within GFF613at 613.722 kb on + strand, within GFF613at 613.730 kb on - strandat 613.737 kb on + strandat 613.745 kb on + strandat 613.748 kb on + strandat 613.753 kb on - strandat 613.753 kb on - strandat 613.787 kb on - strand, within GFF614at 613.792 kb on + strand, within GFF614at 613.800 kb on - strand, within GFF614at 613.800 kb on - strand, within GFF614at 613.800 kb on - strand, within GFF614at 613.831 kb on + strand, within GFF614at 613.871 kb on + strand, within GFF614at 613.874 kb on - strand, within GFF614at 613.874 kb on - strand, within GFF614at 613.874 kb on - strand, within GFF614at 613.875 kb on - strand, within GFF614at 613.879 kb on - strand, within GFF614at 613.884 kb on - strand, within GFF614at 613.888 kb on + strand, within GFF614at 613.901 kb on - strand, within GFF614at 613.905 kb on + strand, within GFF614at 613.913 kb on - strand, within GFF614at 613.917 kb on + strand, within GFF614at 613.932 kb on - strand, within GFF614at 613.940 kb on - strand, within GFF614at 613.972 kb on + strand, within GFF614at 613.980 kb on - strand, within GFF614at 613.980 kb on - strand, within GFF614at 613.980 kb on - strand, within GFF614at 613.985 kb on - strand, within GFF614at 613.985 kb on - strand, within GFF614at 613.992 kb on - strand, within GFF614at 613.999 kb on + strand, within GFF614at 614.007 kb on - strand, within GFF614at 614.022 kb on - strand, within GFF614at 614.054 kb on + strand, within GFF614at 614.057 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.062 kb on - strand, within GFF614at 614.064 kb on + strand, within GFF614at 614.072 kb on + strandat 614.072 kb on + strandat 614.080 kb on + strandat 614.118 kb on - strandat 614.141 kb on - strandat 614.141 kb on - strandat 614.150 kb on + strandat 614.165 kb on - strandat 614.165 kb on - strandat 614.195 kb on + strandat 614.203 kb on - strandat 614.203 kb on - strandat 614.211 kb on + strandat 614.211 kb on + strandat 614.211 kb on - strandat 614.238 kb on - strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.267 kb on + strand, within GFF615at 614.271 kb on + strand, within GFF615at 614.271 kb on + strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.275 kb on - strand, within GFF615at 614.285 kb on - strand, within GFF615at 614.301 kb on + strand, within GFF615at 614.309 kb on - strand, within GFF615at 614.360 kb on - strand, within GFF615at 614.436 kb on + strand, within GFF615at 614.436 kb on + strand, within GFF615at 614.466 kb on + strand, within GFF615at 614.495 kb on + strand, within GFF615at 614.502 kb on - strand, within GFF615at 614.508 kb on - strand, within GFF615at 614.517 kb on + strand, within GFF615at 614.530 kb on + strand, within GFF615at 614.564 kb on + strand, within GFF615at 614.596 kb on + strand, within GFF615at 614.596 kb on + strand, within GFF615at 614.596 kb on + strand, within GFF615at 614.604 kb on - strand, within GFF615at 614.614 kb on - strand, within GFF615at 614.645 kb on + strand, within GFF615at 614.658 kb on - strand, within GFF615at 614.690 kb on - strand, within GFF615at 614.708 kb on + strand, within GFF615at 614.711 kb on - strand, within GFF615at 614.723 kb on - strand, within GFF615

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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612,559 - GFF611 0.84 +1.4
612,564 - GFF611 0.85 +0.0
612,579 - GFF611 0.86 +0.5
612,625 + +0.5
612,630 - -1.9
612,630 - -1.7
612,633 - -0.9
612,633 - -0.8
612,633 - -1.1
612,633 - -2.0
612,633 - -0.2
612,634 - -0.8
612,640 - -1.6
612,640 - -1.0
612,689 + +0.0
612,711 - -0.5
612,770 + -0.3
612,770 + +0.8
612,778 - -0.2
612,778 - -1.5
612,781 + -0.8
613,542 + -0.4
613,542 + -0.8
613,542 + +0.9
613,545 - -1.8
613,547 + -1.0
613,550 - +0.5
613,555 - -2.0
613,555 - -1.6
613,556 + -0.6
613,556 + -1.0
613,564 + -0.9
613,569 - +1.1
613,601 + GFF613 0.24 -1.2
613,609 - GFF613 0.28 -0.2
613,609 - GFF613 0.28 -1.9
613,609 - GFF613 0.28 -1.0
613,647 + GFF613 0.49 -0.3
613,654 - GFF613 0.53 -1.0
613,655 - GFF613 0.53 -1.5
613,655 - GFF613 0.53 -1.6
613,722 + GFF613 0.89 -1.0
613,730 - -0.7
613,737 + +0.3
613,745 + -0.1
613,748 + -0.3
613,753 - -0.0
613,753 - -0.6
613,787 - GFF614 0.13 -0.5
613,792 + GFF614 0.15 -0.5
613,800 - GFF614 0.17 -0.9
613,800 - GFF614 0.17 -0.8
613,800 - GFF614 0.17 -0.6
613,831 + GFF614 0.25 -1.5
613,871 + GFF614 0.36 +1.1
613,874 - GFF614 0.37 +0.4
613,874 - GFF614 0.37 -0.3
613,874 - GFF614 0.37 +0.3
613,875 - GFF614 0.37 -0.5
613,879 - GFF614 0.38 -0.1
613,884 - GFF614 0.39 +0.2
613,888 + GFF614 0.40 -0.3
613,901 - GFF614 0.44 +0.5
613,905 + GFF614 0.45 -1.2
613,913 - GFF614 0.47 -1.3
613,917 + GFF614 0.48 +1.3
613,932 - GFF614 0.52 +0.5
613,940 - GFF614 0.54 -1.4
613,972 + GFF614 0.63 -0.6
613,980 - GFF614 0.65 -0.3
613,980 - GFF614 0.65 -0.0
613,980 - GFF614 0.65 -2.0
613,985 - GFF614 0.66 -0.3
613,985 - GFF614 0.66 -1.3
613,992 - GFF614 0.68 -1.0
613,999 + GFF614 0.70 +0.7
614,007 - GFF614 0.72 -1.3
614,022 - GFF614 0.76 -1.3
614,054 + GFF614 0.85 -0.3
614,057 - GFF614 0.86 -1.3
614,062 - GFF614 0.87 +0.1
614,062 - GFF614 0.87 -1.5
614,062 - GFF614 0.87 -1.4
614,062 - GFF614 0.87 +0.7
614,062 - GFF614 0.87 -0.4
614,062 - GFF614 0.87 +0.9
614,064 + GFF614 0.88 -1.7
614,072 + -1.4
614,072 + -0.8
614,080 + -0.6
614,118 - -0.9
614,141 - -0.3
614,141 - -1.0
614,150 + -0.9
614,165 - -1.0
614,165 - -0.0
614,195 + -1.3
614,203 - +1.4
614,203 - -0.5
614,211 + -0.8
614,211 + -0.3
614,211 - -0.3
614,238 - GFF615 0.10 -0.8
614,267 + GFF615 0.13 -1.3
614,267 + GFF615 0.13 -0.8
614,267 + GFF615 0.13 +0.3
614,267 + GFF615 0.13 +0.5
614,267 + GFF615 0.13 +0.9
614,267 + GFF615 0.13 -1.2
614,271 + GFF615 0.13 -1.8
614,271 + GFF615 0.13 +0.4
614,275 - GFF615 0.14 -0.9
614,275 - GFF615 0.14 -1.3
614,275 - GFF615 0.14 +1.0
614,275 - GFF615 0.14 -1.0
614,275 - GFF615 0.14 -1.1
614,275 - GFF615 0.14 -1.7
614,275 - GFF615 0.14 -1.5
614,285 - GFF615 0.15 -2.3
614,301 + GFF615 0.16 +0.1
614,309 - GFF615 0.17 -1.7
614,360 - GFF615 0.21 -0.5
614,436 + GFF615 0.28 +0.4
614,436 + GFF615 0.28 +0.3
614,466 + GFF615 0.30 -1.0
614,495 + GFF615 0.33 -0.3
614,502 - GFF615 0.34 -0.7
614,508 - GFF615 0.34 +1.5
614,517 + GFF615 0.35 -0.2
614,530 + GFF615 0.36 -0.8
614,564 + GFF615 0.39 -2.4
614,596 + GFF615 0.42 -0.8
614,596 + GFF615 0.42 +0.4
614,596 + GFF615 0.42 -1.5
614,604 - GFF615 0.42 +0.2
614,614 - GFF615 0.43 +0.9
614,645 + GFF615 0.46 -1.3
614,658 - GFF615 0.47 +0.7
614,690 - GFF615 0.50 -2.0
614,708 + GFF615 0.52 -1.0
614,711 - GFF615 0.52 -0.1
614,723 - GFF615 0.53 +0.7

Or see this region's nucleotide sequence