Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF603 and GFF604 are separated by 4 nucleotides GFF604 and GFF605 are separated by 6 nucleotides GFF605 and GFF606 are separated by 119 nucleotides GFF606 and GFF607 are separated by 71 nucleotides GFF607 and GFF608 are separated by 3 nucleotides
GFF603 - GTP-binding protein EngB, at 605,702 to 606,349
GFF603
GFF604 - Protein PhnA, at 606,354 to 606,656
GFF604
GFF605 - Putative ligase protein, at 606,663 to 607,214
GFF605
GFF606 - hypothetical protein, at 607,334 to 607,768
GFF606
GFF607 - hypothetical protein, at 607,840 to 608,163
GFF607
GFF608 - hypothetical protein, at 608,167 to 609,405
GFF608
Position (kb) 606
607
608 Strain fitness (log2 ratio) -2
-1
0
1
2 at 606.333 kb on - strand at 606.333 kb on - strand at 606.333 kb on - strand at 606.333 kb on - strand at 606.339 kb on + strand at 606.340 kb on - strand at 606.340 kb on - strand at 606.343 kb on + strand at 606.343 kb on + strand at 606.343 kb on + strand at 606.344 kb on + strand at 606.351 kb on - strand at 606.351 kb on - strand at 606.351 kb on - strand at 606.358 kb on - strand at 606.366 kb on + strand at 606.366 kb on + strand at 606.366 kb on + strand at 606.378 kb on - strand at 606.398 kb on + strand, within GFF604 at 606.406 kb on - strand, within GFF604 at 606.438 kb on - strand, within GFF604 at 606.441 kb on + strand, within GFF604 at 606.442 kb on + strand, within GFF604 at 606.442 kb on + strand, within GFF604 at 606.450 kb on - strand, within GFF604 at 606.484 kb on - strand, within GFF604 at 606.497 kb on - strand, within GFF604 at 606.499 kb on - strand, within GFF604 at 606.500 kb on + strand, within GFF604 at 606.500 kb on + strand, within GFF604 at 606.515 kb on + strand, within GFF604 at 606.537 kb on - strand, within GFF604 at 606.545 kb on + strand, within GFF604 at 606.552 kb on + strand, within GFF604 at 606.562 kb on - strand, within GFF604 at 606.562 kb on - strand, within GFF604 at 606.562 kb on - strand, within GFF604 at 606.562 kb on - strand, within GFF604 at 606.596 kb on - strand, within GFF604 at 606.618 kb on + strand, within GFF604 at 606.619 kb on + strand, within GFF604 at 606.627 kb on - strand at 606.644 kb on - strand at 606.652 kb on + strand at 606.658 kb on - strand at 606.661 kb on + strand at 606.666 kb on + strand at 606.669 kb on - strand at 606.674 kb on - strand at 606.675 kb on + strand at 606.679 kb on - strand at 606.683 kb on - strand at 606.685 kb on + strand at 606.687 kb on + strand at 606.688 kb on - strand at 606.693 kb on - strand at 606.703 kb on + strand at 606.711 kb on - strand at 606.716 kb on + strand at 606.724 kb on - strand, within GFF605 at 606.731 kb on - strand, within GFF605 at 606.737 kb on - strand, within GFF605 at 606.737 kb on - strand, within GFF605 at 606.739 kb on + strand, within GFF605 at 606.747 kb on - strand, within GFF605 at 606.811 kb on + strand, within GFF605 at 606.816 kb on + strand, within GFF605 at 606.841 kb on - strand, within GFF605 at 606.841 kb on - strand, within GFF605 at 606.848 kb on - strand, within GFF605 at 606.856 kb on + strand, within GFF605 at 606.857 kb on + strand, within GFF605 at 606.858 kb on + strand, within GFF605 at 606.863 kb on + strand, within GFF605 at 606.863 kb on + strand, within GFF605 at 606.863 kb on + strand, within GFF605 at 606.871 kb on - strand, within GFF605 at 606.871 kb on - strand, within GFF605 at 606.882 kb on - strand, within GFF605 at 606.884 kb on + strand, within GFF605 at 606.889 kb on + strand, within GFF605 at 606.897 kb on - strand, within GFF605 at 606.938 kb on + strand, within GFF605 at 606.980 kb on + strand, within GFF605 at 606.980 kb on + strand, within GFF605 at 606.980 kb on + strand, within GFF605 at 606.988 kb on + strand, within GFF605 at 607.004 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.024 kb on + strand, within GFF605 at 607.025 kb on - strand, within GFF605 at 607.025 kb on - strand, within GFF605 at 607.029 kb on + strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.032 kb on - strand, within GFF605 at 607.037 kb on + strand, within GFF605 at 607.037 kb on + strand, within GFF605 at 607.037 kb on + strand, within GFF605 at 607.041 kb on + strand, within GFF605 at 607.041 kb on + strand, within GFF605 at 607.041 kb on + strand, within GFF605 at 607.041 kb on + strand, within GFF605 at 607.047 kb on - strand, within GFF605 at 607.047 kb on - strand, within GFF605 at 607.049 kb on - strand, within GFF605 at 607.049 kb on - strand, within GFF605 at 607.049 kb on - strand, within GFF605 at 607.049 kb on - strand, within GFF605 at 607.054 kb on - strand, within GFF605 at 607.064 kb on - strand, within GFF605 at 607.075 kb on + strand, within GFF605 at 607.075 kb on + strand, within GFF605 at 607.106 kb on - strand, within GFF605 at 607.158 kb on + strand, within GFF605 at 607.161 kb on - strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.303 kb on + strand at 607.308 kb on + strand at 607.311 kb on - strand at 607.311 kb on - strand at 607.311 kb on - strand at 607.311 kb on - strand at 607.313 kb on + strand at 607.313 kb on + strand at 607.313 kb on + strand at 607.313 kb on + strand at 607.318 kb on + strand at 607.318 kb on + strand at 607.321 kb on - strand at 607.321 kb on - strand at 607.321 kb on - strand at 607.326 kb on - strand at 607.326 kb on - strand at 607.330 kb on + strand at 607.345 kb on + strand at 607.350 kb on + strand at 607.350 kb on + strand at 607.356 kb on + strand at 607.373 kb on + strand at 607.401 kb on + strand, within GFF606 at 607.401 kb on - strand, within GFF606 at 607.412 kb on - strand, within GFF606 at 607.412 kb on - strand, within GFF606 at 607.423 kb on - strand, within GFF606 at 607.425 kb on + strand, within GFF606 at 607.459 kb on - strand, within GFF606 at 607.503 kb on + strand, within GFF606 at 607.535 kb on + strand, within GFF606 at 607.548 kb on - strand, within GFF606 at 607.577 kb on + strand, within GFF606 at 607.592 kb on + strand, within GFF606 at 607.592 kb on + strand, within GFF606 at 607.592 kb on + strand, within GFF606 at 607.592 kb on + strand, within GFF606 at 607.592 kb on + strand, within GFF606 at 607.600 kb on - strand, within GFF606 at 607.600 kb on - strand, within GFF606 at 607.600 kb on - strand, within GFF606 at 607.610 kb on - strand, within GFF606 at 607.629 kb on + strand, within GFF606 at 607.629 kb on + strand, within GFF606 at 607.637 kb on - strand, within GFF606 at 607.637 kb on - strand, within GFF606 at 607.637 kb on - strand, within GFF606 at 607.648 kb on - strand, within GFF606 at 607.656 kb on - strand, within GFF606 at 607.660 kb on - strand, within GFF606 at 607.662 kb on - strand, within GFF606 at 607.668 kb on - strand, within GFF606 at 607.677 kb on + strand, within GFF606 at 607.685 kb on + strand, within GFF606 at 607.685 kb on - strand, within GFF606 at 607.697 kb on + strand, within GFF606 at 607.716 kb on - strand, within GFF606 at 607.716 kb on - strand, within GFF606 at 607.716 kb on - strand, within GFF606 at 607.716 kb on - strand, within GFF606 at 607.740 kb on + strand at 607.753 kb on - strand at 607.755 kb on + strand at 607.768 kb on - strand at 607.804 kb on + strand at 607.806 kb on - strand at 607.809 kb on + strand at 607.809 kb on + strand at 607.812 kb on - strand at 607.817 kb on - strand at 607.822 kb on - strand at 607.842 kb on - strand at 607.898 kb on + strand, within GFF607 at 607.898 kb on + strand, within GFF607 at 607.916 kb on - strand, within GFF607 at 607.924 kb on - strand, within GFF607 at 607.947 kb on - strand, within GFF607 at 608.000 kb on + strand, within GFF607 at 608.021 kb on + strand, within GFF607 at 608.021 kb on + strand, within GFF607 at 608.029 kb on - strand, within GFF607 at 608.031 kb on + strand, within GFF607 at 608.031 kb on + strand, within GFF607 at 608.032 kb on - strand, within GFF607 at 608.034 kb on - strand, within GFF607 at 608.036 kb on + strand, within GFF607 at 608.036 kb on + strand, within GFF607 at 608.036 kb on + strand, within GFF607 at 608.036 kb on + strand, within GFF607 at 608.036 kb on + strand, within GFF607 at 608.036 kb on + strand, within GFF607 at 608.036 kb on + strand, within GFF607 at 608.037 kb on - strand, within GFF607 at 608.039 kb on - strand, within GFF607 at 608.039 kb on - strand, within GFF607 at 608.039 kb on - strand, within GFF607 at 608.039 kb on - strand, within GFF607 at 608.039 kb on - strand, within GFF607 at 608.039 kb on - strand, within GFF607 at 608.041 kb on + strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.044 kb on - strand, within GFF607 at 608.046 kb on + strand, within GFF607 at 608.049 kb on - strand, within GFF607 at 608.051 kb on + strand, within GFF607 at 608.051 kb on + strand, within GFF607 at 608.053 kb on + strand, within GFF607 at 608.054 kb on - strand, within GFF607 at 608.054 kb on - strand, within GFF607 at 608.054 kb on - strand, within GFF607 at 608.056 kb on + strand, within GFF607 at 608.056 kb on + strand, within GFF607 at 608.059 kb on - strand, within GFF607 at 608.061 kb on - strand, within GFF607 at 608.064 kb on - strand, within GFF607 at 608.074 kb on - strand, within GFF607 at 608.097 kb on + strand, within GFF607 at 608.106 kb on + strand, within GFF607 at 608.134 kb on + strand at 608.142 kb on - strand at 608.142 kb on - strand at 608.152 kb on - strand at 608.168 kb on - strand at 608.173 kb on - strand at 608.173 kb on - strand at 608.178 kb on - strand at 608.191 kb on + strand at 608.196 kb on + strand at 608.204 kb on - strand at 608.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 606,333 - +0.1 606,333 - -1.4 606,333 - +0.5 606,333 - +0.1 606,339 + -1.0 606,340 - +1.3 606,340 - -1.5 606,343 + -0.2 606,343 + -0.3 606,343 + -0.8 606,344 + -0.6 606,351 - -0.7 606,351 - -2.1 606,351 - -0.6 606,358 - -1.5 606,366 + +0.4 606,366 + +0.3 606,366 + -0.6 606,378 - -0.6 606,398 + GFF604 0.15 -0.8 606,406 - GFF604 0.17 -0.8 606,438 - GFF604 0.28 -1.1 606,441 + GFF604 0.29 -1.3 606,442 + GFF604 0.29 -0.9 606,442 + GFF604 0.29 -1.4 606,450 - GFF604 0.32 -0.6 606,484 - GFF604 0.43 -1.6 606,497 - GFF604 0.47 -0.5 606,499 - GFF604 0.48 +0.6 606,500 + GFF604 0.48 +0.4 606,500 + GFF604 0.48 +0.3 606,515 + GFF604 0.53 -0.9 606,537 - GFF604 0.60 +0.5 606,545 + GFF604 0.63 +0.1 606,552 + GFF604 0.65 +0.1 606,562 - GFF604 0.69 -1.6 606,562 - GFF604 0.69 +0.6 606,562 - GFF604 0.69 -0.1 606,562 - GFF604 0.69 +1.7 606,596 - GFF604 0.80 -0.5 606,618 + GFF604 0.87 -1.1 606,619 + GFF604 0.87 -1.2 606,627 - +0.1 606,644 - +1.0 606,652 + +0.1 606,658 - -1.7 606,661 + -1.0 606,666 + +0.1 606,669 - +0.7 606,674 - -0.2 606,675 + +0.1 606,679 - +1.4 606,683 - +0.6 606,685 + -0.9 606,687 + +0.2 606,688 - -1.0 606,693 - -0.3 606,703 + -0.7 606,711 - -1.4 606,716 + +0.4 606,724 - GFF605 0.11 +0.9 606,731 - GFF605 0.12 -0.3 606,737 - GFF605 0.13 +0.0 606,737 - GFF605 0.13 +0.1 606,739 + GFF605 0.14 -0.3 606,747 - GFF605 0.15 -1.1 606,811 + GFF605 0.27 -1.1 606,816 + GFF605 0.28 -1.9 606,841 - GFF605 0.32 -1.7 606,841 - GFF605 0.32 -0.6 606,848 - GFF605 0.34 -0.6 606,856 + GFF605 0.35 +0.1 606,857 + GFF605 0.35 +0.3 606,858 + GFF605 0.35 -0.4 606,863 + GFF605 0.36 +0.3 606,863 + GFF605 0.36 +1.6 606,863 + GFF605 0.36 -1.2 606,871 - GFF605 0.38 +0.4 606,871 - GFF605 0.38 +1.1 606,882 - GFF605 0.40 +0.1 606,884 + GFF605 0.40 -0.9 606,889 + GFF605 0.41 +0.1 606,897 - GFF605 0.42 -1.0 606,938 + GFF605 0.50 -1.7 606,980 + GFF605 0.57 -2.1 606,980 + GFF605 0.57 -0.7 606,980 + GFF605 0.57 +0.8 606,988 + GFF605 0.59 +0.3 607,004 + GFF605 0.62 -0.3 607,024 + GFF605 0.65 -0.3 607,024 + GFF605 0.65 +0.3 607,024 + GFF605 0.65 -0.2 607,024 + GFF605 0.65 -1.3 607,024 + GFF605 0.65 +0.5 607,024 + GFF605 0.65 +0.8 607,024 + GFF605 0.65 -0.7 607,024 + GFF605 0.65 -1.2 607,024 + GFF605 0.65 +0.3 607,024 + GFF605 0.65 +0.5 607,024 + GFF605 0.65 -0.1 607,025 - GFF605 0.66 +1.0 607,025 - GFF605 0.66 -0.6 607,029 + GFF605 0.66 -0.8 607,032 - GFF605 0.67 +0.1 607,032 - GFF605 0.67 -1.3 607,032 - GFF605 0.67 -1.5 607,032 - GFF605 0.67 -0.8 607,032 - GFF605 0.67 -0.3 607,032 - GFF605 0.67 -0.5 607,032 - GFF605 0.67 -0.8 607,032 - GFF605 0.67 +0.1 607,032 - GFF605 0.67 -0.0 607,032 - GFF605 0.67 -0.0 607,032 - GFF605 0.67 -0.6 607,037 + GFF605 0.68 -1.6 607,037 + GFF605 0.68 -2.5 607,037 + GFF605 0.68 -1.0 607,041 + GFF605 0.68 -0.7 607,041 + GFF605 0.68 -0.3 607,041 + GFF605 0.68 -0.4 607,041 + GFF605 0.68 -1.0 607,047 - GFF605 0.70 +1.1 607,047 - GFF605 0.70 -0.7 607,049 - GFF605 0.70 -1.0 607,049 - GFF605 0.70 -0.1 607,049 - GFF605 0.70 -0.3 607,049 - GFF605 0.70 -0.6 607,054 - GFF605 0.71 -0.6 607,064 - GFF605 0.73 -1.0 607,075 + GFF605 0.75 -0.7 607,075 + GFF605 0.75 -1.6 607,106 - GFF605 0.80 -0.8 607,158 + GFF605 0.90 +0.1 607,161 - -1.4 607,303 + -0.8 607,303 + +0.2 607,303 + +1.0 607,303 + +0.3 607,303 + -1.2 607,303 + -0.5 607,303 + +0.0 607,308 + -0.8 607,311 - +1.3 607,311 - -1.6 607,311 - -1.0 607,311 - +0.2 607,313 + -0.0 607,313 + -0.3 607,313 + +0.5 607,313 + -1.6 607,318 + -1.0 607,318 + -1.8 607,321 - -0.9 607,321 - -1.7 607,321 - -0.0 607,326 - -0.5 607,326 - -1.0 607,330 + -0.6 607,345 + -1.0 607,350 + -1.6 607,350 + -1.7 607,356 + -0.3 607,373 + -1.0 607,401 + GFF606 0.15 -0.5 607,401 - GFF606 0.15 -1.6 607,412 - GFF606 0.18 +0.1 607,412 - GFF606 0.18 -0.4 607,423 - GFF606 0.20 +0.4 607,425 + GFF606 0.21 -2.0 607,459 - GFF606 0.29 -1.4 607,503 + GFF606 0.39 +1.0 607,535 + GFF606 0.46 -1.3 607,548 - GFF606 0.49 -1.1 607,577 + GFF606 0.56 -1.0 607,592 + GFF606 0.59 +0.0 607,592 + GFF606 0.59 -1.3 607,592 + GFF606 0.59 -1.7 607,592 + GFF606 0.59 +0.5 607,592 + GFF606 0.59 +0.2 607,600 - GFF606 0.61 -1.3 607,600 - GFF606 0.61 -1.0 607,600 - GFF606 0.61 -1.9 607,610 - GFF606 0.63 -1.3 607,629 + GFF606 0.68 -1.3 607,629 + GFF606 0.68 -0.7 607,637 - GFF606 0.70 +0.5 607,637 - GFF606 0.70 -0.3 607,637 - GFF606 0.70 +1.0 607,648 - GFF606 0.72 -0.9 607,656 - GFF606 0.74 +0.3 607,660 - GFF606 0.75 -1.2 607,662 - GFF606 0.75 +1.2 607,668 - GFF606 0.77 +0.1 607,677 + GFF606 0.79 +0.3 607,685 + GFF606 0.81 +2.4 607,685 - GFF606 0.81 -1.3 607,697 + GFF606 0.83 +0.1 607,716 - GFF606 0.88 -1.1 607,716 - GFF606 0.88 -1.5 607,716 - GFF606 0.88 -0.9 607,716 - GFF606 0.88 -0.5 607,740 + +0.6 607,753 - -2.0 607,755 + -0.9 607,768 - -1.3 607,804 + -0.6 607,806 - -0.7 607,809 + -0.8 607,809 + -0.0 607,812 - -0.6 607,817 - +0.7 607,822 - +0.7 607,842 - +0.2 607,898 + GFF607 0.18 -1.7 607,898 + GFF607 0.18 -0.8 607,916 - GFF607 0.23 -0.7 607,924 - GFF607 0.26 +1.3 607,947 - GFF607 0.33 -0.8 608,000 + GFF607 0.49 -1.4 608,021 + GFF607 0.56 -1.7 608,021 + GFF607 0.56 +0.0 608,029 - GFF607 0.58 -1.4 608,031 + GFF607 0.59 +0.7 608,031 + GFF607 0.59 -0.6 608,032 - GFF607 0.59 -0.5 608,034 - GFF607 0.60 -1.2 608,036 + GFF607 0.60 -1.5 608,036 + GFF607 0.60 +1.3 608,036 + GFF607 0.60 +1.1 608,036 + GFF607 0.60 +0.5 608,036 + GFF607 0.60 -0.2 608,036 + GFF607 0.60 +0.1 608,036 + GFF607 0.60 +1.4 608,037 - GFF607 0.61 -2.0 608,039 - GFF607 0.61 -0.8 608,039 - GFF607 0.61 +0.3 608,039 - GFF607 0.61 -0.6 608,039 - GFF607 0.61 -0.5 608,039 - GFF607 0.61 -1.2 608,039 - GFF607 0.61 -0.3 608,041 + GFF607 0.62 -1.3 608,044 - GFF607 0.63 +0.5 608,044 - GFF607 0.63 -0.6 608,044 - GFF607 0.63 -0.8 608,044 - GFF607 0.63 -0.6 608,044 - GFF607 0.63 -1.4 608,044 - GFF607 0.63 -1.0 608,044 - GFF607 0.63 +1.8 608,044 - GFF607 0.63 +0.7 608,044 - GFF607 0.63 +0.0 608,044 - GFF607 0.63 -0.3 608,044 - GFF607 0.63 -0.8 608,046 + GFF607 0.64 +0.9 608,049 - GFF607 0.65 -0.7 608,051 + GFF607 0.65 -1.2 608,051 + GFF607 0.65 -2.0 608,053 + GFF607 0.66 -0.8 608,054 - GFF607 0.66 -1.8 608,054 - GFF607 0.66 +0.2 608,054 - GFF607 0.66 -2.0 608,056 + GFF607 0.67 -1.0 608,056 + GFF607 0.67 -1.1 608,059 - GFF607 0.68 +0.7 608,061 - GFF607 0.68 +0.0 608,064 - GFF607 0.69 -1.5 608,074 - GFF607 0.72 +0.7 608,097 + GFF607 0.79 -0.1 608,106 + GFF607 0.82 -1.5 608,134 + +0.5 608,142 - -1.2 608,142 - +0.5 608,152 - -0.7 608,168 - -0.5 608,173 - +0.2 608,173 - -1.0 608,178 - +0.5 608,191 + +1.1 608,196 + -1.1 608,204 - +0.9 608,213 + -1.3
Or see this region's nucleotide sequence