Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF598 and GFF599 are separated by 170 nucleotides GFF599 and GFF600 are separated by 32 nucleotides GFF600 and GFF601 overlap by 4 nucleotides GFF601 and GFF602 are separated by 35 nucleotides
GFF598 - Protein-disulfide isomerase, at 602,260 to 602,970
GFF598
GFF599 - LSU ribosomal protein L34p, at 603,141 to 603,275
GFF599
GFF600 - Ribonuclease P protein component (EC 3.1.26.5), at 603,308 to 603,709
GFF600
GFF601 - Membrane protein insertion efficiency factor YidD, at 603,706 to 603,918
GFF601
GFF602 - Inner membrane protein translocase and chaperone YidC, long form, at 603,954 to 605,660
GFF602
Position (kb) 603
604 Strain fitness (log2 ratio) -1
0
1
2 at 602.368 kb on + strand, within GFF598 at 602.373 kb on + strand, within GFF598 at 602.373 kb on + strand, within GFF598 at 602.381 kb on + strand, within GFF598 at 602.429 kb on - strand, within GFF598 at 602.510 kb on + strand, within GFF598 at 602.569 kb on + strand, within GFF598 at 602.589 kb on + strand, within GFF598 at 602.607 kb on + strand, within GFF598 at 602.607 kb on + strand, within GFF598 at 602.607 kb on + strand, within GFF598 at 602.615 kb on - strand, within GFF598 at 602.616 kb on + strand, within GFF598 at 602.629 kb on + strand, within GFF598 at 602.637 kb on - strand, within GFF598 at 602.659 kb on - strand, within GFF598 at 602.697 kb on + strand, within GFF598 at 602.749 kb on - strand, within GFF598 at 602.762 kb on + strand, within GFF598 at 602.781 kb on + strand, within GFF598 at 602.838 kb on + strand, within GFF598 at 602.846 kb on - strand, within GFF598 at 602.893 kb on - strand, within GFF598 at 602.905 kb on + strand at 602.913 kb on - strand at 602.980 kb on - strand at 603.002 kb on + strand at 603.002 kb on + strand at 603.036 kb on - strand at 603.632 kb on + strand, within GFF600 at 603.632 kb on + strand, within GFF600 at 603.632 kb on + strand, within GFF600 at 603.691 kb on - strand at 603.723 kb on + strand at 603.740 kb on + strand, within GFF601 at 603.740 kb on + strand, within GFF601 at 603.748 kb on - strand, within GFF601 at 603.748 kb on - strand, within GFF601 at 603.768 kb on + strand, within GFF601 at 603.777 kb on - strand, within GFF601 at 603.777 kb on - strand, within GFF601 at 603.787 kb on + strand, within GFF601 at 603.787 kb on + strand, within GFF601 at 603.787 kb on + strand, within GFF601 at 603.792 kb on + strand, within GFF601 at 603.795 kb on - strand, within GFF601 at 603.795 kb on - strand, within GFF601 at 603.795 kb on - strand, within GFF601 at 603.795 kb on - strand, within GFF601 at 603.856 kb on + strand, within GFF601 at 603.882 kb on + strand, within GFF601 at 603.914 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 602,368 + GFF598 0.15 +0.2 602,373 + GFF598 0.16 +1.3 602,373 + GFF598 0.16 +0.9 602,381 + GFF598 0.17 -1.1 602,429 - GFF598 0.24 -1.2 602,510 + GFF598 0.35 +0.1 602,569 + GFF598 0.43 +0.4 602,589 + GFF598 0.46 -1.4 602,607 + GFF598 0.49 -0.6 602,607 + GFF598 0.49 -1.6 602,607 + GFF598 0.49 -0.7 602,615 - GFF598 0.50 -0.4 602,616 + GFF598 0.50 +0.1 602,629 + GFF598 0.52 +0.5 602,637 - GFF598 0.53 +1.5 602,659 - GFF598 0.56 -0.7 602,697 + GFF598 0.61 -0.8 602,749 - GFF598 0.69 -0.5 602,762 + GFF598 0.71 +0.4 602,781 + GFF598 0.73 +0.1 602,838 + GFF598 0.81 +0.8 602,846 - GFF598 0.82 -1.3 602,893 - GFF598 0.89 -1.2 602,905 + +1.3 602,913 - +0.4 602,980 - -1.0 603,002 + +0.7 603,002 + +0.4 603,036 - +0.6 603,632 + GFF600 0.81 +0.1 603,632 + GFF600 0.81 -1.0 603,632 + GFF600 0.81 -0.8 603,691 - -1.1 603,723 + -0.0 603,740 + GFF601 0.16 -1.0 603,740 + GFF601 0.16 -0.3 603,748 - GFF601 0.20 -1.4 603,748 - GFF601 0.20 +0.2 603,768 + GFF601 0.29 +1.5 603,777 - GFF601 0.33 -0.1 603,777 - GFF601 0.33 -1.0 603,787 + GFF601 0.38 -1.2 603,787 + GFF601 0.38 -0.6 603,787 + GFF601 0.38 +0.8 603,792 + GFF601 0.40 -0.8 603,795 - GFF601 0.42 -1.2 603,795 - GFF601 0.42 +1.9 603,795 - GFF601 0.42 +0.2 603,795 - GFF601 0.42 +0.8 603,856 + GFF601 0.70 +1.7 603,882 + GFF601 0.83 +0.5 603,914 + -0.5
Or see this region's nucleotide sequence