Strain Fitness in Sphingobium sp. HT1-2 around GFF5410

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,383,547	-				-0.1
5,383,547	-				-1.9
5,383,547	-				-1.1
5,383,547	-				-1.1
5,383,558	+				+0.1
5,383,566	-				-1.1
5,383,569	+				-1.5
5,383,583	+				-1.0
5,383,587	-				-1.2
5,383,669	+				-1.0
5,383,728	+				+0.9
5,383,740	+				-0.8
5,383,740	+				-0.0
5,383,742	+				-0.5
5,383,748	-				-1.1
5,383,752	+				-0.3
5,383,752	+				-0.6
5,383,752	+				+1.1
5,383,764	+				-0.3
5,383,821	+				-0.4
5,383,821	-				-2.3
5,383,840	+				-0.8
5,383,847	+				-2.1
5,383,847	+				+0.6
5,383,847	+				+0.2
5,383,847	+				-1.0
5,383,847	-				-0.6
5,383,848	-				-1.5
5,383,853	-				-0.4
5,383,855	-				-0.5
5,383,855	-				-1.0
5,383,855	-				-1.3
5,383,857	+				-0.6
5,383,891	+				-2.4
5,384,010	-				-1.4
5,384,067	+				+0.2
5,384,085	+				+0.2
5,384,101	+				-1.2
5,384,103	+				-0.7
5,384,140	-				+0.3
5,384,180	+				-0.8
5,384,205	-				-2.0
5,384,205	-				+0.2
5,384,237	-				-1.1
5,384,262	+				-1.2
5,384,262	+				-2.0
5,384,269	-				-0.4
5,384,270	-				-0.4
5,384,270	-				-0.9
5,384,270	-				-1.0
5,384,276	+				-0.5
5,384,276	+				-1.9
5,384,276	+				-1.9
5,384,276	+				+0.8
5,384,276	+				-2.1
5,384,276	+				-1.2
5,384,284	-				-1.7
5,384,284	-				-0.3
5,384,284	-				-0.4
5,384,284	-				-1.1
5,384,284	-				+1.5
5,384,302	+				+0.3
5,384,313	+				-1.5
5,384,321	-				-0.4
5,384,326	-				-1.9
5,384,349	-				-0.9
5,384,351	+				+2.2
5,384,368	+				-2.0
5,384,376	-				-1.0
5,384,376	-				-0.9
5,384,376	-				-1.1
5,384,376	-				-0.8
5,384,376	-				-2.6
5,384,376	-				-1.0
5,384,378	+				+0.1
5,384,386	-				-1.4
5,384,386	-				-0.7
5,384,386	-				+0.5
5,384,400	+				-0.1
5,384,470	+		GFF5409	0.40	-0.9
5,384,478	+		GFF5409	0.47	-1.1
5,384,478	+		GFF5409	0.47	-0.7
5,384,478	+		GFF5409	0.47	-0.3
5,384,478	+		GFF5409	0.47	-0.1
5,384,478	+		GFF5409	0.47	-0.2
5,384,478	+		GFF5409	0.47	-1.1
5,384,486	-		GFF5409	0.54	-1.7
5,384,486	-		GFF5409	0.54	-0.0
5,384,486	-		GFF5409	0.54	+0.1
5,384,486	-		GFF5409	0.54	-2.3
5,384,512	+		GFF5409	0.77	-0.8
5,384,512	+		GFF5409	0.77	-0.3
5,384,512	+		GFF5409	0.77	-1.0
5,384,520	-		GFF5409	0.84	-0.5
5,384,520	-		GFF5409	0.84	-1.2
5,384,527	+				-1.0
5,384,528	+				-3.1
5,384,530	-				-0.1
5,384,535	-				-0.0
5,384,541	-				-0.8
5,384,541	-				-0.1
5,384,541	-				-0.2
5,384,541	-				+0.3
5,384,541	-				-1.8
5,384,543	+				-1.4
5,384,546	-				-0.7
5,384,551	+				-0.2
5,384,551	+				-0.3
5,384,551	-				-0.3
5,384,559	-				-1.6
5,384,559	-				-1.5
5,384,559	-				-0.6
5,384,559	-				-0.2
5,384,559	-				-0.2
5,384,559	-				-0.9
5,384,561	+				-0.8
5,384,561	+				-0.7
5,384,561	+				-0.3
5,384,561	+				-0.0
5,384,561	+				+0.0
5,384,561	+				-2.0
5,384,561	+				-1.2
5,384,561	+				-1.3
5,384,561	+				-2.1
5,384,561	+				-1.9
5,384,562	+				-0.3
5,384,564	-				+0.3
5,384,564	-				-1.0
5,384,569	-				-1.8
5,384,569	-				+0.3
5,384,569	-				-1.5
5,384,569	-				-0.8
5,384,569	-				-0.8
5,384,569	-				-0.8
5,384,569	-				-0.6
5,384,569	-				-1.0
5,384,569	-				-1.3
5,384,569	-				-2.6
5,384,570	-				-0.3
5,384,570	-				-0.9
5,384,575	+				-0.4
5,384,579	-				-0.7
5,384,583	+				-1.7
5,384,587	+				-0.5
5,384,587	+				-0.6
5,384,595	-				+0.3
5,384,602	-				+0.6
5,384,602	-				-1.5
5,384,603	-				-2.1
5,384,621	+				-1.1
5,384,621	+				-1.0
5,384,621	+				-1.2
5,384,623	+				-1.4
5,384,633	+				+1.2
5,384,663	+		GFF5410	0.13	-0.6
5,384,671	-		GFF5410	0.14	+0.8
5,384,703	+		GFF5410	0.17	-2.1
5,384,703	+		GFF5410	0.17	+0.5
5,384,703	+		GFF5410	0.17	-0.5
5,384,703	+		GFF5410	0.17	-1.0
5,384,709	+		GFF5410	0.18	-1.9
5,384,709	+		GFF5410	0.18	-1.3
5,384,709	+		GFF5410	0.18	-0.3
5,384,709	+		GFF5410	0.18	-2.2
5,384,709	+		GFF5410	0.18	-0.4
5,384,717	-		GFF5410	0.19	-1.0
5,384,717	-		GFF5410	0.19	-0.4
5,384,720	+		GFF5410	0.19	-0.0
5,384,738	-		GFF5410	0.21	-3.4
5,384,741	+		GFF5410	0.21	-1.2
5,384,776	+		GFF5410	0.25	-0.4
5,384,786	-		GFF5410	0.26	-1.4
5,384,822	-		GFF5410	0.30	-1.6
5,384,852	-		GFF5410	0.33	-1.5
5,384,914	+		GFF5410	0.40	+0.8
5,384,951	+		GFF5410	0.44	+0.7
5,384,962	+		GFF5410	0.45	-2.4
5,384,970	-		GFF5410	0.46	-1.1
5,384,996	+		GFF5410	0.49	-2.2
5,385,004	-		GFF5410	0.50	+0.1
5,385,040	+		GFF5410	0.54	-1.5
5,385,042	+		GFF5410	0.54	-2.7
5,385,042	+		GFF5410	0.54	-2.3
5,385,042	+		GFF5410	0.54	-0.1
5,385,042	+		GFF5410	0.54	+0.0
5,385,042	+		GFF5410	0.54	-0.0
5,385,042	+		GFF5410	0.54	-1.0
5,385,042	+		GFF5410	0.54	-1.5
5,385,042	+		GFF5410	0.54	-1.9
5,385,042	+		GFF5410	0.54	-0.2
5,385,042	+		GFF5410	0.54	-0.9
5,385,042	+		GFF5410	0.54	-0.3
5,385,042	-		GFF5410	0.54	-1.2
5,385,048	-		GFF5410	0.55	-1.7
5,385,048	-		GFF5410	0.55	+0.6
5,385,050	-		GFF5410	0.55	-0.7
5,385,050	-		GFF5410	0.55	-1.2
5,385,050	-		GFF5410	0.55	-1.2
5,385,050	-		GFF5410	0.55	-1.5
5,385,050	-		GFF5410	0.55	+0.7
5,385,050	-		GFF5410	0.55	-0.9
5,385,050	-		GFF5410	0.55	+0.5
5,385,050	-		GFF5410	0.55	-2.3
5,385,050	-		GFF5410	0.55	-1.2
5,385,050	-		GFF5410	0.55	-0.9
5,385,060	-		GFF5410	0.56	-0.8
5,385,068	+		GFF5410	0.57	-0.7
5,385,072	-		GFF5410	0.57	-0.8
5,385,085	-		GFF5410	0.59	-0.9
5,385,098	+		GFF5410	0.60	+1.0
5,385,098	+		GFF5410	0.60	+0.4
5,385,103	+		GFF5410	0.61	-0.0
5,385,106	-		GFF5410	0.61	-1.5
5,385,106	-		GFF5410	0.61	-1.0
5,385,113	+		GFF5410	0.62	-0.3
5,385,116	-		GFF5410	0.62	+0.3
5,385,116	-		GFF5410	0.62	-1.3
5,385,143	+		GFF5410	0.65	-0.4
5,385,158	+		GFF5410	0.67	-0.9
5,385,158	+		GFF5410	0.67	+0.2
5,385,166	-		GFF5410	0.68	-1.0
5,385,166	-		GFF5410	0.68	-0.0
5,385,178	+		GFF5410	0.69	-0.2
5,385,178	+		GFF5410	0.69	-2.0
5,385,192	-		GFF5410	0.70	-1.2
5,385,198	-		GFF5410	0.71	-0.7
5,385,200	+		GFF5410	0.71	+0.7
5,385,205	+		GFF5410	0.72	-0.7
5,385,214	+		GFF5410	0.73	-1.5
5,385,220	+		GFF5410	0.73	+0.5
5,385,224	-		GFF5410	0.74	-0.1
5,385,224	-		GFF5410	0.74	+0.5
5,385,225	+		GFF5410	0.74	-0.6
5,385,233	-		GFF5410	0.75	-0.9
5,385,244	+		GFF5410	0.76	-0.6
5,385,244	+		GFF5410	0.76	+0.2
5,385,244	+		GFF5410	0.76	+0.6
5,385,252	-		GFF5410	0.77	+0.1
5,385,343	+		GFF5410	0.87	+0.5
5,385,361	+		GFF5410	0.89	-1.5
5,385,364	+		GFF5410	0.89	-2.1
5,385,364	+		GFF5410	0.89	-1.3
5,385,370	+		GFF5410	0.90	-0.9
5,385,372	-				-1.1
5,385,383	-				-0.3
5,385,436	+				-0.4
5,385,443	-				-0.3
5,385,449	-				-0.5
5,385,455	-				-1.3
5,385,456	-				-0.7
5,385,456	-				-0.9
5,385,456	-				+0.8
5,385,456	-				-0.5
5,385,456	-				-0.4
5,385,456	-				-0.3
5,385,456	-				-2.0
5,385,456	-				-1.2
5,385,959	-				-0.6
5,385,989	+				-0.2
5,385,997	+				-1.7
5,386,005	-				-2.0
5,386,005	-				+0.5
5,386,005	-				-0.9
5,386,093	+				-0.0
5,386,094	+				+0.3
5,386,109	+				-1.8
5,386,117	-				-1.2
5,386,166	+				-1.2
5,386,174	-				-0.6
5,386,204	+				-1.2
5,386,205	+				+1.3
5,386,205	+				-0.2
5,386,205	+				-1.0
5,386,207	-				-0.8
5,386,207	-				+0.3
5,386,213	-				+0.3
5,386,235	-				+0.3
5,386,235	-				-0.7
5,386,243	-				-0.7
5,386,274	+		GFF5412	0.10	-1.2
5,386,286	+		GFF5412	0.12	-0.8
5,386,296	+		GFF5412	0.13	+0.2
5,386,301	+		GFF5412	0.13	-0.2
5,386,304	-		GFF5412	0.13	+0.2
5,386,308	-		GFF5412	0.14	+0.9
5,386,309	-		GFF5412	0.14	-0.5
5,386,320	-		GFF5412	0.15	-2.4
5,386,332	+		GFF5412	0.16	-0.0
5,386,337	+		GFF5412	0.17	-0.9
5,386,340	-		GFF5412	0.17	-2.2
5,386,340	-		GFF5412	0.17	+1.4
5,386,378	+		GFF5412	0.21	+0.3
5,386,385	+		GFF5412	0.21	-2.1
5,386,386	-		GFF5412	0.21	-0.7
5,386,386	-		GFF5412	0.21	-1.0
5,386,386	-		GFF5412	0.21	-0.1
5,386,393	-		GFF5412	0.22	-1.8
5,386,394	+		GFF5412	0.22	-1.2
5,386,394	+		GFF5412	0.22	-0.9
5,386,394	+		GFF5412	0.22	+0.7
5,386,394	+		GFF5412	0.22	+0.2
5,386,394	+		GFF5412	0.22	-1.5
5,386,394	+		GFF5412	0.22	-1.0
5,386,394	+		GFF5412	0.22	+0.3
5,386,399	+		GFF5412	0.23	-0.9
5,386,399	+		GFF5412	0.23	-0.3
5,386,399	+		GFF5412	0.23	-1.8
5,386,399	+		GFF5412	0.23	-1.4
5,386,402	-		GFF5412	0.23	-1.6
5,386,402	-		GFF5412	0.23	-1.1
5,386,402	-		GFF5412	0.23	-0.9
5,386,402	-		GFF5412	0.23	+0.1
5,386,404	+		GFF5412	0.23	-0.6
5,386,412	+		GFF5412	0.24	-0.1
5,386,412	+		GFF5412	0.24	-1.1
5,386,412	+		GFF5412	0.24	-1.0
5,386,412	+		GFF5412	0.24	+0.2
5,386,415	-		GFF5412	0.24	-0.5
5,386,419	-		GFF5412	0.25	-0.4
5,386,420	-		GFF5412	0.25	-1.5
5,386,420	-		GFF5412	0.25	-0.5
5,386,420	-		GFF5412	0.25	+0.2
5,386,436	+		GFF5412	0.26	-1.1
5,386,436	+		GFF5412	0.26	-0.0
5,386,444	-		GFF5412	0.27	-1.2
5,386,444	-		GFF5412	0.27	-2.1
5,386,446	-		GFF5412	0.27	-2.0
5,386,456	+		GFF5412	0.28	-1.6