Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF531 and GFF532 overlap by 4 nucleotides GFF532 and GFF533 are separated by 10 nucleotides GFF533 and GFF534 are separated by 13 nucleotides
GFF531 - Benzoate 1,2-dioxygenase alpha subunit (EC 1.14.12.10), at 528,311 to 529,672
GFF531
GFF532 - Benzoate 1,2-dioxygenase beta subunit (EC 1.14.12.10), at 529,669 to 530,184
GFF532
GFF533 - 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25), at 530,195 to 530,980
GFF533
GFF534 - Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5), at 530,994 to 531,701
GFF534
Position (kb) 529
530
531 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 528.685 kb on + strand, within GFF531 at 528.706 kb on + strand, within GFF531 at 528.749 kb on + strand, within GFF531 at 528.749 kb on + strand, within GFF531 at 528.757 kb on - strand, within GFF531 at 528.757 kb on - strand, within GFF531 at 528.775 kb on - strand, within GFF531 at 528.804 kb on + strand, within GFF531 at 528.841 kb on + strand, within GFF531 at 528.842 kb on + strand, within GFF531 at 528.848 kb on - strand, within GFF531 at 528.855 kb on - strand, within GFF531 at 528.885 kb on + strand, within GFF531 at 528.887 kb on + strand, within GFF531 at 528.889 kb on + strand, within GFF531 at 528.901 kb on - strand, within GFF531 at 528.910 kb on + strand, within GFF531 at 528.976 kb on - strand, within GFF531 at 528.978 kb on - strand, within GFF531 at 529.001 kb on + strand, within GFF531 at 529.001 kb on + strand, within GFF531 at 529.009 kb on - strand, within GFF531 at 529.021 kb on + strand, within GFF531 at 529.021 kb on + strand, within GFF531 at 529.021 kb on + strand, within GFF531 at 529.026 kb on + strand, within GFF531 at 529.029 kb on - strand, within GFF531 at 529.034 kb on - strand, within GFF531 at 529.034 kb on - strand, within GFF531 at 529.062 kb on - strand, within GFF531 at 529.076 kb on + strand, within GFF531 at 529.094 kb on + strand, within GFF531 at 529.095 kb on + strand, within GFF531 at 529.095 kb on + strand, within GFF531 at 529.095 kb on + strand, within GFF531 at 529.095 kb on + strand, within GFF531 at 529.095 kb on + strand, within GFF531 at 529.095 kb on + strand, within GFF531 at 529.095 kb on + strand, within GFF531 at 529.103 kb on - strand, within GFF531 at 529.103 kb on - strand, within GFF531 at 529.103 kb on - strand, within GFF531 at 529.103 kb on - strand, within GFF531 at 529.103 kb on - strand, within GFF531 at 529.103 kb on - strand, within GFF531 at 529.105 kb on + strand, within GFF531 at 529.105 kb on + strand, within GFF531 at 529.105 kb on + strand, within GFF531 at 529.113 kb on - strand, within GFF531 at 529.113 kb on - strand, within GFF531 at 529.113 kb on - strand, within GFF531 at 529.118 kb on + strand, within GFF531 at 529.126 kb on - strand, within GFF531 at 529.126 kb on - strand, within GFF531 at 529.127 kb on + strand, within GFF531 at 529.133 kb on - strand, within GFF531 at 529.160 kb on - strand, within GFF531 at 529.178 kb on + strand, within GFF531 at 529.181 kb on - strand, within GFF531 at 529.187 kb on - strand, within GFF531 at 529.192 kb on - strand, within GFF531 at 529.200 kb on + strand, within GFF531 at 529.200 kb on + strand, within GFF531 at 529.230 kb on + strand, within GFF531 at 529.230 kb on + strand, within GFF531 at 529.238 kb on - strand, within GFF531 at 529.238 kb on - strand, within GFF531 at 529.238 kb on - strand, within GFF531 at 529.238 kb on - strand, within GFF531 at 529.239 kb on - strand, within GFF531 at 529.262 kb on + strand, within GFF531 at 529.275 kb on + strand, within GFF531 at 529.286 kb on + strand, within GFF531 at 529.302 kb on - strand, within GFF531 at 529.328 kb on - strand, within GFF531 at 529.333 kb on - strand, within GFF531 at 529.341 kb on - strand, within GFF531 at 529.383 kb on + strand, within GFF531 at 529.387 kb on - strand, within GFF531 at 529.390 kb on + strand, within GFF531 at 529.402 kb on + strand, within GFF531 at 529.410 kb on - strand, within GFF531 at 529.417 kb on - strand, within GFF531 at 529.435 kb on + strand, within GFF531 at 529.442 kb on - strand, within GFF531 at 529.442 kb on - strand, within GFF531 at 529.445 kb on + strand, within GFF531 at 529.445 kb on + strand, within GFF531 at 529.453 kb on - strand, within GFF531 at 529.457 kb on - strand, within GFF531 at 529.488 kb on - strand, within GFF531 at 529.496 kb on - strand, within GFF531 at 529.557 kb on - strand at 529.564 kb on + strand at 529.572 kb on + strand at 529.577 kb on + strand at 529.579 kb on - strand at 529.582 kb on + strand at 529.595 kb on + strand at 529.595 kb on + strand at 529.595 kb on + strand at 529.603 kb on - strand at 529.603 kb on - strand at 529.616 kb on + strand at 529.617 kb on + strand at 529.667 kb on + strand at 529.675 kb on - strand at 529.678 kb on - strand at 529.699 kb on + strand at 529.702 kb on - strand at 529.704 kb on + strand at 529.706 kb on + strand at 529.707 kb on - strand at 529.707 kb on - strand at 529.739 kb on + strand, within GFF532 at 529.739 kb on + strand, within GFF532 at 529.747 kb on - strand, within GFF532 at 529.752 kb on - strand, within GFF532 at 529.752 kb on - strand, within GFF532 at 529.768 kb on + strand, within GFF532 at 529.775 kb on - strand, within GFF532 at 529.787 kb on + strand, within GFF532 at 529.787 kb on + strand, within GFF532 at 529.787 kb on + strand, within GFF532 at 529.787 kb on + strand, within GFF532 at 529.787 kb on + strand, within GFF532 at 529.787 kb on + strand, within GFF532 at 529.795 kb on - strand, within GFF532 at 529.795 kb on - strand, within GFF532 at 529.815 kb on + strand, within GFF532 at 529.815 kb on + strand, within GFF532 at 529.823 kb on - strand, within GFF532 at 529.825 kb on + strand, within GFF532 at 529.828 kb on - strand, within GFF532 at 529.842 kb on - strand, within GFF532 at 529.869 kb on + strand, within GFF532 at 529.869 kb on + strand, within GFF532 at 529.880 kb on - strand, within GFF532 at 529.880 kb on - strand, within GFF532 at 529.891 kb on + strand, within GFF532 at 529.891 kb on + strand, within GFF532 at 529.891 kb on + strand, within GFF532 at 529.892 kb on + strand, within GFF532 at 529.899 kb on - strand, within GFF532 at 529.899 kb on - strand, within GFF532 at 529.899 kb on - strand, within GFF532 at 529.899 kb on - strand, within GFF532 at 529.900 kb on - strand, within GFF532 at 529.914 kb on + strand, within GFF532 at 529.914 kb on + strand, within GFF532 at 529.937 kb on - strand, within GFF532 at 529.958 kb on - strand, within GFF532 at 529.958 kb on - strand, within GFF532 at 530.024 kb on - strand, within GFF532 at 530.033 kb on + strand, within GFF532 at 530.033 kb on + strand, within GFF532 at 530.035 kb on - strand, within GFF532 at 530.102 kb on - strand, within GFF532 at 530.180 kb on + strand at 530.224 kb on + strand at 530.230 kb on + strand at 530.232 kb on - strand at 530.232 kb on - strand at 530.232 kb on - strand at 530.239 kb on - strand at 530.246 kb on + strand at 530.251 kb on + strand at 530.251 kb on + strand at 530.254 kb on - strand at 530.254 kb on - strand at 530.254 kb on - strand at 530.259 kb on - strand at 530.269 kb on + strand at 530.275 kb on - strand, within GFF533 at 530.275 kb on - strand, within GFF533 at 530.290 kb on - strand, within GFF533 at 530.292 kb on + strand, within GFF533 at 530.306 kb on - strand, within GFF533 at 530.308 kb on + strand, within GFF533 at 530.352 kb on - strand, within GFF533 at 530.352 kb on - strand, within GFF533 at 530.357 kb on + strand, within GFF533 at 530.390 kb on + strand, within GFF533 at 530.390 kb on + strand, within GFF533 at 530.398 kb on - strand, within GFF533 at 530.398 kb on - strand, within GFF533 at 530.416 kb on + strand, within GFF533 at 530.424 kb on - strand, within GFF533 at 530.424 kb on - strand, within GFF533 at 530.438 kb on + strand, within GFF533 at 530.446 kb on - strand, within GFF533 at 530.483 kb on + strand, within GFF533 at 530.494 kb on + strand, within GFF533 at 530.496 kb on + strand, within GFF533 at 530.496 kb on + strand, within GFF533 at 530.496 kb on + strand, within GFF533 at 530.504 kb on - strand, within GFF533 at 530.504 kb on - strand, within GFF533 at 530.504 kb on - strand, within GFF533 at 530.511 kb on + strand, within GFF533 at 530.516 kb on + strand, within GFF533 at 530.516 kb on + strand, within GFF533 at 530.524 kb on - strand, within GFF533 at 530.550 kb on + strand, within GFF533 at 530.558 kb on - strand, within GFF533 at 530.558 kb on - strand, within GFF533 at 530.560 kb on + strand, within GFF533 at 530.571 kb on + strand, within GFF533 at 530.589 kb on + strand, within GFF533 at 530.597 kb on - strand, within GFF533 at 530.607 kb on - strand, within GFF533 at 530.622 kb on - strand, within GFF533 at 530.626 kb on + strand, within GFF533 at 530.641 kb on - strand, within GFF533 at 530.656 kb on + strand, within GFF533 at 530.658 kb on - strand, within GFF533 at 530.674 kb on + strand, within GFF533 at 530.674 kb on + strand, within GFF533 at 530.683 kb on - strand, within GFF533 at 530.687 kb on + strand, within GFF533 at 530.695 kb on - strand, within GFF533 at 530.715 kb on + strand, within GFF533 at 530.722 kb on + strand, within GFF533 at 530.758 kb on + strand, within GFF533 at 530.760 kb on + strand, within GFF533 at 530.763 kb on + strand, within GFF533 at 530.766 kb on - strand, within GFF533 at 530.768 kb on + strand, within GFF533 at 530.771 kb on - strand, within GFF533 at 530.771 kb on - strand, within GFF533 at 530.771 kb on - strand, within GFF533 at 530.771 kb on - strand, within GFF533 at 530.771 kb on - strand, within GFF533 at 530.771 kb on - strand, within GFF533 at 530.771 kb on - strand, within GFF533 at 530.793 kb on - strand, within GFF533 at 530.805 kb on + strand, within GFF533 at 530.806 kb on - strand, within GFF533 at 530.818 kb on + strand, within GFF533 at 530.826 kb on - strand, within GFF533 at 530.852 kb on + strand, within GFF533 at 530.893 kb on + strand, within GFF533 at 530.916 kb on + strand at 530.916 kb on + strand at 530.921 kb on + strand at 530.924 kb on - strand at 530.924 kb on - strand at 530.924 kb on - strand at 530.943 kb on + strand at 530.943 kb on + strand at 530.951 kb on - strand at 530.951 kb on - strand at 530.951 kb on - strand at 530.955 kb on - strand at 530.956 kb on - strand at 530.956 kb on - strand at 530.991 kb on - strand at 531.033 kb on + strand at 531.070 kb on + strand, within GFF534 at 531.070 kb on + strand, within GFF534 at 531.070 kb on + strand, within GFF534 at 531.070 kb on + strand, within GFF534 at 531.070 kb on + strand, within GFF534 at 531.078 kb on - strand, within GFF534 at 531.078 kb on - strand, within GFF534 at 531.078 kb on - strand, within GFF534 at 531.078 kb on - strand, within GFF534 at 531.078 kb on - strand, within GFF534 at 531.088 kb on + strand, within GFF534 at 531.091 kb on + strand, within GFF534 at 531.169 kb on + strand, within GFF534 at 531.169 kb on + strand, within GFF534
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 528,685 + GFF531 0.27 -0.3 528,706 + GFF531 0.29 +0.2 528,749 + GFF531 0.32 +0.9 528,749 + GFF531 0.32 -0.7 528,757 - GFF531 0.33 -0.9 528,757 - GFF531 0.33 -0.1 528,775 - GFF531 0.34 -1.1 528,804 + GFF531 0.36 -1.1 528,841 + GFF531 0.39 +0.4 528,842 + GFF531 0.39 +0.1 528,848 - GFF531 0.39 +0.2 528,855 - GFF531 0.40 -0.9 528,885 + GFF531 0.42 -1.1 528,887 + GFF531 0.42 -0.9 528,889 + GFF531 0.42 -1.1 528,901 - GFF531 0.43 -0.8 528,910 + GFF531 0.44 -0.6 528,976 - GFF531 0.49 +0.1 528,978 - GFF531 0.49 +1.8 529,001 + GFF531 0.51 +1.9 529,001 + GFF531 0.51 +0.1 529,009 - GFF531 0.51 -2.3 529,021 + GFF531 0.52 +1.5 529,021 + GFF531 0.52 -1.1 529,021 + GFF531 0.52 +0.8 529,026 + GFF531 0.52 -1.2 529,029 - GFF531 0.53 +0.4 529,034 - GFF531 0.53 +0.4 529,034 - GFF531 0.53 -0.6 529,062 - GFF531 0.55 +1.1 529,076 + GFF531 0.56 +0.7 529,094 + GFF531 0.57 -0.3 529,095 + GFF531 0.58 -2.7 529,095 + GFF531 0.58 -0.0 529,095 + GFF531 0.58 -0.8 529,095 + GFF531 0.58 +0.8 529,095 + GFF531 0.58 -1.3 529,095 + GFF531 0.58 +0.7 529,095 + GFF531 0.58 -0.6 529,103 - GFF531 0.58 -0.1 529,103 - GFF531 0.58 +0.1 529,103 - GFF531 0.58 +0.9 529,103 - GFF531 0.58 -0.4 529,103 - GFF531 0.58 -2.0 529,103 - GFF531 0.58 +0.3 529,105 + GFF531 0.58 +0.8 529,105 + GFF531 0.58 +0.3 529,105 + GFF531 0.58 -0.2 529,113 - GFF531 0.59 -1.4 529,113 - GFF531 0.59 +1.0 529,113 - GFF531 0.59 -1.6 529,118 + GFF531 0.59 +0.5 529,126 - GFF531 0.60 -0.6 529,126 - GFF531 0.60 -1.8 529,127 + GFF531 0.60 +1.2 529,133 - GFF531 0.60 +0.2 529,160 - GFF531 0.62 -0.1 529,178 + GFF531 0.64 -0.7 529,181 - GFF531 0.64 -0.8 529,187 - GFF531 0.64 -0.6 529,192 - GFF531 0.65 -0.9 529,200 + GFF531 0.65 +0.4 529,200 + GFF531 0.65 -0.4 529,230 + GFF531 0.67 +0.7 529,230 + GFF531 0.67 -0.0 529,238 - GFF531 0.68 +1.0 529,238 - GFF531 0.68 +0.7 529,238 - GFF531 0.68 -0.7 529,238 - GFF531 0.68 +1.3 529,239 - GFF531 0.68 -0.7 529,262 + GFF531 0.70 -0.0 529,275 + GFF531 0.71 +0.1 529,286 + GFF531 0.72 +0.9 529,302 - GFF531 0.73 -0.4 529,328 - GFF531 0.75 +0.2 529,333 - GFF531 0.75 +0.6 529,341 - GFF531 0.76 -0.1 529,383 + GFF531 0.79 -0.9 529,387 - GFF531 0.79 -0.4 529,390 + GFF531 0.79 +3.0 529,402 + GFF531 0.80 -0.3 529,410 - GFF531 0.81 +0.5 529,417 - GFF531 0.81 -2.1 529,435 + GFF531 0.83 -0.3 529,442 - GFF531 0.83 +0.1 529,442 - GFF531 0.83 -0.7 529,445 + GFF531 0.83 -1.1 529,445 + GFF531 0.83 -0.4 529,453 - GFF531 0.84 -0.4 529,457 - GFF531 0.84 +1.1 529,488 - GFF531 0.86 -0.1 529,496 - GFF531 0.87 +0.1 529,557 - -0.9 529,564 + -0.9 529,572 + -0.5 529,577 + -0.8 529,579 - +0.5 529,582 + +0.1 529,595 + -0.0 529,595 + -0.3 529,595 + -0.0 529,603 - -0.4 529,603 - -0.1 529,616 + -0.4 529,617 + +1.5 529,667 + +1.5 529,675 - +1.3 529,678 - +0.3 529,699 + -0.8 529,702 - -1.3 529,704 + +1.3 529,706 + -0.3 529,707 - +1.2 529,707 - -0.2 529,739 + GFF532 0.14 -0.8 529,739 + GFF532 0.14 +0.5 529,747 - GFF532 0.15 -0.9 529,752 - GFF532 0.16 -0.2 529,752 - GFF532 0.16 -0.4 529,768 + GFF532 0.19 +4.1 529,775 - GFF532 0.21 +0.9 529,787 + GFF532 0.23 +1.5 529,787 + GFF532 0.23 -0.4 529,787 + GFF532 0.23 +2.1 529,787 + GFF532 0.23 +1.0 529,787 + GFF532 0.23 +0.1 529,787 + GFF532 0.23 -0.5 529,795 - GFF532 0.24 -1.0 529,795 - GFF532 0.24 -1.2 529,815 + GFF532 0.28 -0.7 529,815 + GFF532 0.28 -1.0 529,823 - GFF532 0.30 -0.6 529,825 + GFF532 0.30 +0.1 529,828 - GFF532 0.31 +0.9 529,842 - GFF532 0.34 -1.1 529,869 + GFF532 0.39 +0.6 529,869 + GFF532 0.39 +0.4 529,880 - GFF532 0.41 +1.7 529,880 - GFF532 0.41 -0.9 529,891 + GFF532 0.43 -1.1 529,891 + GFF532 0.43 +1.7 529,891 + GFF532 0.43 +0.1 529,892 + GFF532 0.43 +0.7 529,899 - GFF532 0.45 -0.8 529,899 - GFF532 0.45 -0.6 529,899 - GFF532 0.45 -0.7 529,899 - GFF532 0.45 -0.1 529,900 - GFF532 0.45 -0.6 529,914 + GFF532 0.47 +1.6 529,914 + GFF532 0.47 -1.5 529,937 - GFF532 0.52 +0.3 529,958 - GFF532 0.56 +1.0 529,958 - GFF532 0.56 -0.1 530,024 - GFF532 0.69 -0.7 530,033 + GFF532 0.71 -1.2 530,033 + GFF532 0.71 +0.6 530,035 - GFF532 0.71 -0.2 530,102 - GFF532 0.84 -0.6 530,180 + -0.3 530,224 + -0.9 530,230 + +0.7 530,232 - -0.5 530,232 - -0.3 530,232 - +0.4 530,239 - +0.2 530,246 + +0.2 530,251 + -0.6 530,251 + +0.1 530,254 - +0.1 530,254 - +0.1 530,254 - +0.9 530,259 - +0.4 530,269 + -0.7 530,275 - GFF533 0.10 +1.0 530,275 - GFF533 0.10 -0.5 530,290 - GFF533 0.12 -0.3 530,292 + GFF533 0.12 -1.1 530,306 - GFF533 0.14 +0.1 530,308 + GFF533 0.14 -0.2 530,352 - GFF533 0.20 +0.6 530,352 - GFF533 0.20 -0.9 530,357 + GFF533 0.21 -1.1 530,390 + GFF533 0.25 +1.4 530,390 + GFF533 0.25 -0.8 530,398 - GFF533 0.26 -0.5 530,398 - GFF533 0.26 +0.7 530,416 + GFF533 0.28 +1.7 530,424 - GFF533 0.29 -0.7 530,424 - GFF533 0.29 +0.4 530,438 + GFF533 0.31 +0.4 530,446 - GFF533 0.32 +0.3 530,483 + GFF533 0.37 -0.4 530,494 + GFF533 0.38 +0.8 530,496 + GFF533 0.38 +1.2 530,496 + GFF533 0.38 +0.2 530,496 + GFF533 0.38 -0.3 530,504 - GFF533 0.39 +1.5 530,504 - GFF533 0.39 -1.0 530,504 - GFF533 0.39 +0.1 530,511 + GFF533 0.40 +0.3 530,516 + GFF533 0.41 -0.1 530,516 + GFF533 0.41 +0.6 530,524 - GFF533 0.42 +0.1 530,550 + GFF533 0.45 -0.8 530,558 - GFF533 0.46 -0.2 530,558 - GFF533 0.46 +0.2 530,560 + GFF533 0.46 -2.2 530,571 + GFF533 0.48 +0.1 530,589 + GFF533 0.50 -0.9 530,597 - GFF533 0.51 +1.9 530,607 - GFF533 0.52 +1.4 530,622 - GFF533 0.54 +1.9 530,626 + GFF533 0.55 +0.3 530,641 - GFF533 0.57 +0.9 530,656 + GFF533 0.59 +0.8 530,658 - GFF533 0.59 -0.2 530,674 + GFF533 0.61 +0.2 530,674 + GFF533 0.61 -0.1 530,683 - GFF533 0.62 -0.3 530,687 + GFF533 0.63 +2.5 530,695 - GFF533 0.64 -0.4 530,715 + GFF533 0.66 +0.5 530,722 + GFF533 0.67 +0.2 530,758 + GFF533 0.72 -1.4 530,760 + GFF533 0.72 -0.4 530,763 + GFF533 0.72 -1.5 530,766 - GFF533 0.73 -1.2 530,768 + GFF533 0.73 +1.4 530,771 - GFF533 0.73 +1.4 530,771 - GFF533 0.73 -0.0 530,771 - GFF533 0.73 +0.4 530,771 - GFF533 0.73 +1.7 530,771 - GFF533 0.73 +1.2 530,771 - GFF533 0.73 +1.2 530,771 - GFF533 0.73 +0.7 530,793 - GFF533 0.76 -0.8 530,805 + GFF533 0.78 +1.2 530,806 - GFF533 0.78 +0.7 530,818 + GFF533 0.79 -0.9 530,826 - GFF533 0.80 -0.9 530,852 + GFF533 0.84 -1.5 530,893 + GFF533 0.89 +0.2 530,916 + +1.9 530,916 + -1.0 530,921 + +1.2 530,924 - +1.0 530,924 - +0.1 530,924 - +1.3 530,943 + +0.5 530,943 + -0.9 530,951 - +0.7 530,951 - -2.0 530,951 - -1.7 530,955 - -0.6 530,956 - +0.3 530,956 - -0.4 530,991 - +0.8 531,033 + -0.5 531,070 + GFF534 0.11 -1.7 531,070 + GFF534 0.11 -0.1 531,070 + GFF534 0.11 +0.9 531,070 + GFF534 0.11 -0.0 531,070 + GFF534 0.11 -1.5 531,078 - GFF534 0.12 -0.7 531,078 - GFF534 0.12 +0.8 531,078 - GFF534 0.12 +0.5 531,078 - GFF534 0.12 +1.3 531,078 - GFF534 0.12 -0.8 531,088 + GFF534 0.13 -2.4 531,091 + GFF534 0.14 -1.5 531,169 + GFF534 0.25 +0.7 531,169 + GFF534 0.25 -0.1
Or see this region's nucleotide sequence