Strain Fitness in Sphingobium sp. HT1-2 around GFF5310

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,298,768	-		GFF5307	0.63	-2.1
5,298,794	+		GFF5307	0.65	+0.2
5,298,827	-		GFF5307	0.68	-0.8
5,298,841	+		GFF5307	0.69	-0.2
5,298,850	-		GFF5307	0.70	+0.9
5,298,851	-		GFF5307	0.70	-1.4
5,298,865	+		GFF5307	0.71	-2.1
5,298,897	+		GFF5307	0.73	-1.0
5,298,897	+		GFF5307	0.73	-2.3
5,298,897	+		GFF5307	0.73	-1.2
5,298,897	+		GFF5307	0.73	+0.9
5,298,897	+		GFF5307	0.73	-1.7
5,298,897	+		GFF5307	0.73	+0.2
5,298,898	+		GFF5307	0.73	-1.6
5,298,900	-		GFF5307	0.73	-1.5
5,298,900	-		GFF5307	0.73	-0.3
5,298,900	-		GFF5307	0.73	-0.2
5,298,902	+		GFF5307	0.74	+0.1
5,298,905	+		GFF5307	0.74	+0.7
5,298,905	-		GFF5307	0.74	-0.5
5,298,905	-		GFF5307	0.74	-1.7
5,298,905	-		GFF5307	0.74	+0.7
5,298,905	-		GFF5307	0.74	-0.6
5,298,905	-		GFF5307	0.74	-0.3
5,298,905	-		GFF5307	0.74	-1.4
5,298,905	-		GFF5307	0.74	-0.8
5,298,905	-		GFF5307	0.74	-1.3
5,298,905	-		GFF5307	0.74	-2.2
5,298,905	-		GFF5307	0.74	+0.8
5,298,905	-		GFF5307	0.74	-0.8
5,298,906	-		GFF5307	0.74	+0.4
5,298,907	+		GFF5307	0.74	-0.1
5,298,907	+		GFF5307	0.74	-0.4
5,298,907	+		GFF5307	0.74	-0.6
5,298,907	+		GFF5307	0.74	-1.2
5,298,935	+		GFF5307	0.76	+0.3
5,298,963	+		GFF5307	0.78	-0.8
5,298,981	-		GFF5307	0.80	-0.7
5,299,000	-		GFF5307	0.81	-1.9
5,299,005	-		GFF5307	0.82	-0.3
5,299,005	-		GFF5307	0.82	-0.2
5,299,005	-		GFF5307	0.82	-1.4
5,299,005	-		GFF5307	0.82	-0.8
5,299,014	+		GFF5307	0.82	-2.5
5,299,014	+		GFF5307	0.82	-1.7
5,299,014	+		GFF5307	0.82	-0.7
5,299,014	+		GFF5307	0.82	+1.2
5,299,014	+		GFF5307	0.82	-0.4
5,299,014	+		GFF5307	0.82	-1.9
5,299,014	+		GFF5307	0.82	-0.8
5,299,014	+		GFF5307	0.82	+0.2
5,299,020	-		GFF5307	0.83	-1.6
5,299,022	-		GFF5307	0.83	-1.0
5,299,022	-		GFF5307	0.83	-1.2
5,299,022	-		GFF5307	0.83	-1.5
5,299,022	-		GFF5307	0.83	-1.5
5,299,022	-		GFF5307	0.83	-0.1
5,299,022	-		GFF5307	0.83	-1.0
5,299,065	+		GFF5307	0.86	-1.2
5,299,068	-		GFF5307	0.86	-1.4
5,299,072	+		GFF5307	0.87	-1.5
5,299,073	-		GFF5307	0.87	-0.7
5,299,073	-		GFF5307	0.87	-0.1
5,299,073	-		GFF5307	0.87	-0.2
5,299,075	-		GFF5307	0.87	-1.1
5,299,077	+		GFF5307	0.87	-0.2
5,299,077	+		GFF5307	0.87	-0.7
5,299,077	+		GFF5307	0.87	-0.5
5,299,077	+		GFF5307	0.87	-1.2
5,299,080	-		GFF5307	0.87	-1.5
5,299,085	-		GFF5307	0.88	-1.4
5,299,085	-		GFF5307	0.88	-0.1
5,299,085	-		GFF5307	0.88	-0.9
5,299,110	-		GFF5307	0.90	-0.6
5,299,121	+				-1.1
5,299,121	+				-1.3
5,299,121	+				-1.5
5,299,121	+				-1.1
5,299,129	-				-0.0
5,299,129	-				+0.3
5,299,129	-				-1.2
5,299,129	-				-0.7
5,299,129	-				+0.9
5,299,131	+				-1.4
5,299,131	+				-0.7
5,299,131	+				+0.2
5,299,131	+				-2.5
5,299,131	+				+0.1
5,299,131	+				-1.1
5,299,131	+				-0.7
5,299,131	+				-1.0
5,299,139	-				-1.0
5,299,139	-				-1.9
5,299,139	-				+0.8
5,299,139	-				-1.5
5,299,139	-				-1.9
5,299,139	-				-2.8
5,299,192	+				+0.6
5,299,192	+				-0.0
5,299,192	+				-2.8
5,299,192	+				-0.0
5,299,192	+				-1.7
5,299,192	+				+0.1
5,299,192	+				+0.1
5,299,192	-				+1.0
5,299,200	-				+0.5
5,299,200	-				-1.9
5,299,219	+				-2.2
5,299,227	-				-1.8
5,299,236	+				-1.6
5,299,239	+				-0.8
5,299,240	+				+0.2
5,299,240	+				-0.6
5,299,242	-				+0.8
5,299,256	+				-1.0
5,299,256	+				-0.2
5,299,264	-				-0.3
5,299,267	-				-2.2
5,299,586	+				+0.3
5,299,607	+				-0.5
5,299,656	-				-0.1
5,299,737	+				-0.8
5,299,737	+				-2.3
5,299,737	+				-2.5
5,299,737	+				-0.0
5,299,737	+				+0.5
5,299,737	+				-1.1
5,299,737	+				-1.5
5,299,737	+				-1.5
5,299,737	+				-0.9
5,299,737	+				+0.6
5,299,737	+				+0.3
5,299,745	-				-0.3
5,299,745	-				-0.8
5,299,745	-				-1.6
5,299,745	-				-1.1
5,299,745	-				+0.2
5,299,745	-				-0.4
5,299,745	-				+0.1
5,299,745	-				-0.8
5,299,789	+				+0.6
5,299,789	+				+0.1
5,299,789	+				-0.2
5,299,794	+				-0.2
5,299,797	-				-1.1
5,299,799	+				+0.4
5,299,799	+				+0.1
5,299,799	+				+1.3
5,299,799	+				+2.5
5,299,799	+				-0.3
5,299,799	+				-1.0
5,299,799	+				-0.7
5,299,807	-				-0.7
5,299,878	+				-0.0
5,299,894	+				-1.3
5,299,911	-				-0.3
5,299,913	+				+0.2
5,299,913	+				-0.4
5,299,913	+				+1.4
5,299,919	+				-1.1
5,299,921	-				-1.1
5,299,921	-				-2.0
5,299,921	-				-1.7
5,299,927	-				-0.8
5,299,927	-				-1.3
5,299,948	-				-1.5
5,299,976	+				-0.9
5,299,984	-				+1.0
5,299,984	-				-0.7
5,299,986	+				-2.0
5,299,986	+				+1.2
5,299,986	+				-1.3
5,299,986	+				-0.0
5,299,986	+				+0.2
5,299,986	+				+0.3
5,299,986	+				-2.0
5,299,986	+				+0.3
5,299,986	+				-0.5
5,299,989	-				-1.2
5,299,989	-				-0.8
5,299,994	-				-1.0
5,299,994	-				-0.7
5,299,994	-				-0.2
5,299,994	-				+0.7
5,299,996	+				-1.2
5,299,996	+				-1.5
5,299,996	+				-0.9
5,300,004	-		GFF5310	0.10	+0.2
5,300,004	-		GFF5310	0.10	-1.7
5,300,004	-		GFF5310	0.10	-0.9
5,300,004	-		GFF5310	0.10	-0.9
5,300,005	-		GFF5310	0.10	-1.0
5,300,015	-		GFF5310	0.11	-1.8
5,300,019	+		GFF5310	0.11	-0.0
5,300,025	-		GFF5310	0.11	-0.2
5,300,027	+		GFF5310	0.11	-1.0
5,300,035	-		GFF5310	0.11	+0.9
5,300,040	+		GFF5310	0.12	+0.9
5,300,048	-		GFF5310	0.12	-1.4
5,300,048	-		GFF5310	0.12	+0.5
5,300,048	-		GFF5310	0.12	-0.2
5,300,065	+		GFF5310	0.13	-2.0
5,300,086	+		GFF5310	0.13	-1.6
5,300,087	-		GFF5310	0.13	-1.3
5,300,098	+		GFF5310	0.14	+0.4
5,300,099	+		GFF5310	0.14	+0.6
5,300,104	+		GFF5310	0.14	-1.5
5,300,104	+		GFF5310	0.14	-1.5
5,300,104	+		GFF5310	0.14	-0.6
5,300,105	-		GFF5310	0.14	+0.7
5,300,105	-		GFF5310	0.14	-0.8
5,300,105	-		GFF5310	0.14	-0.1
5,300,107	-		GFF5310	0.14	-1.7
5,300,112	-		GFF5310	0.14	-0.1
5,300,112	-		GFF5310	0.14	-0.5
5,300,112	-		GFF5310	0.14	-1.2
5,300,112	-		GFF5310	0.14	-0.3
5,300,128	+		GFF5310	0.15	-0.9
5,300,133	+		GFF5310	0.15	-1.7
5,300,136	-		GFF5310	0.15	-0.2
5,300,154	+		GFF5310	0.16	+0.2
5,300,164	-		GFF5310	0.17	-1.5
5,300,166	+		GFF5310	0.17	-0.2
5,300,206	-		GFF5310	0.18	+1.0
5,300,208	-		GFF5310	0.18	+0.4
5,300,216	+		GFF5310	0.19	-0.5
5,300,221	+		GFF5310	0.19	-0.0
5,300,221	+		GFF5310	0.19	+0.4
5,300,221	+		GFF5310	0.19	+0.7
5,300,229	-		GFF5310	0.19	-0.7
5,300,229	-		GFF5310	0.19	-1.4
5,300,233	+		GFF5310	0.19	+0.7
5,300,297	+		GFF5310	0.22	+0.6
5,300,302	+		GFF5310	0.22	+0.3
5,300,310	-		GFF5310	0.23	+0.1
5,300,358	-		GFF5310	0.25	+0.4
5,300,393	+		GFF5310	0.26	+0.0
5,300,406	-		GFF5310	0.26	+1.1
5,300,406	-		GFF5310	0.26	-1.5
5,300,445	+		GFF5310	0.28	-0.9
5,300,445	-		GFF5310	0.28	-0.7
5,300,448	-		GFF5310	0.28	-0.7
5,300,460	+		GFF5310	0.29	+0.9
5,300,460	+		GFF5310	0.29	-0.2
5,300,532	-		GFF5310	0.32	+0.6
5,300,546	-		GFF5310	0.32	-0.5
5,300,560	+		GFF5310	0.33	-0.9
5,300,575	+		GFF5310	0.33	-0.3
5,300,583	-		GFF5310	0.34	+0.5
5,300,589	+		GFF5310	0.34	-0.3
5,300,589	+		GFF5310	0.34	-1.1
5,300,589	+		GFF5310	0.34	-0.2
5,300,589	+		GFF5310	0.34	-1.4
5,300,589	+		GFF5310	0.34	-0.1
5,300,589	+		GFF5310	0.34	-1.0
5,300,589	+		GFF5310	0.34	-1.1
5,300,590	-		GFF5310	0.34	-0.2
5,300,594	+		GFF5310	0.34	+0.9
5,300,597	-		GFF5310	0.34	-0.7
5,300,597	-		GFF5310	0.34	-0.6
5,300,597	-		GFF5310	0.34	-0.7
5,300,597	-		GFF5310	0.34	-0.4
5,300,597	-		GFF5310	0.34	-2.2
5,300,605	+		GFF5310	0.35	+0.2
5,300,642	-		GFF5310	0.36	-0.7
5,300,691	+		GFF5310	0.38	-0.7
5,300,728	-		GFF5310	0.40	-1.0
5,300,754	-		GFF5310	0.41	-0.9
5,300,776	-		GFF5310	0.42	-0.8
5,300,821	-		GFF5310	0.43	+0.5
5,300,823	+		GFF5310	0.43	-0.2
5,300,823	+		GFF5310	0.43	+0.2
5,300,840	+		GFF5310	0.44	+0.1
5,300,840	+		GFF5310	0.44	-2.5
5,300,844	-		GFF5310	0.44	-0.5
5,300,848	-		GFF5310	0.44	-0.5
5,300,849	-		GFF5310	0.44	-0.2
5,300,919	-		GFF5310	0.47	-0.8
5,300,928	-		GFF5310	0.48	-0.0
5,300,960	-		GFF5310	0.49	-1.2
5,300,960	-		GFF5310	0.49	+0.5
5,300,960	-		GFF5310	0.49	-2.3
5,300,963	+		GFF5310	0.49	+0.2
5,300,976	-		GFF5310	0.50	-2.0
5,301,007	+		GFF5310	0.51	+0.3
5,301,007	+		GFF5310	0.51	-0.4
5,301,015	-		GFF5310	0.51	+0.2
5,301,015	-		GFF5310	0.51	-0.4
5,301,015	-		GFF5310	0.51	-0.3
5,301,036	-		GFF5310	0.52	-0.4
5,301,038	+		GFF5310	0.52	+1.6
5,301,048	+		GFF5310	0.53	+1.7
5,301,058	-		GFF5310	0.53	-1.1
5,301,058	-		GFF5310	0.53	-1.4
5,301,066	+		GFF5310	0.53	-0.0
5,301,069	+		GFF5310	0.53	-1.7
5,301,069	+		GFF5310	0.53	-1.4
5,301,069	+		GFF5310	0.53	-1.1
5,301,075	+		GFF5310	0.54	-0.8
5,301,076	-		GFF5310	0.54	+0.3
5,301,076	-		GFF5310	0.54	+0.2
5,301,083	-		GFF5310	0.54	-0.8
5,301,121	+		GFF5310	0.56	+1.2
5,301,132	+		GFF5310	0.56	-0.3
5,301,134	+		GFF5310	0.56	-1.6
5,301,154	+		GFF5310	0.57	+0.4
5,301,162	-		GFF5310	0.57	-1.5
5,301,162	-		GFF5310	0.57	-1.5
5,301,162	-		GFF5310	0.57	-0.7
5,301,184	-		GFF5310	0.58	-1.0
5,301,188	-		GFF5310	0.58	-2.1
5,301,189	+		GFF5310	0.58	-0.5
5,301,197	-		GFF5310	0.59	-0.3
5,301,197	-		GFF5310	0.59	-0.4
5,301,197	-		GFF5310	0.59	+0.9
5,301,197	-		GFF5310	0.59	-1.1
5,301,197	-		GFF5310	0.59	-1.0
5,301,203	-		GFF5310	0.59	+0.0
5,301,206	+		GFF5310	0.59	+0.6
5,301,264	+		GFF5310	0.61	-1.3
5,301,268	+		GFF5310	0.62	-1.3
5,301,276	-		GFF5310	0.62	+1.0
5,301,285	+		GFF5310	0.62	-0.7
5,301,292	+		GFF5310	0.63	-0.5
5,301,297	+		GFF5310	0.63	+0.6
5,301,300	-		GFF5310	0.63	+1.1
5,301,305	-		GFF5310	0.63	+0.7
5,301,305	-		GFF5310	0.63	-0.7
5,301,305	-		GFF5310	0.63	-0.7
5,301,337	+		GFF5310	0.64	-0.1
5,301,337	+		GFF5310	0.64	-0.0
5,301,345	-		GFF5310	0.65	+0.1
5,301,350	-		GFF5310	0.65	+0.3
5,301,356	+		GFF5310	0.65	-0.9
5,301,363	+		GFF5310	0.65	-0.8
5,301,363	+		GFF5310	0.65	+0.1
5,301,363	+		GFF5310	0.65	+1.0
5,301,364	+		GFF5310	0.65	+0.5
5,301,366	-		GFF5310	0.66	+0.2
5,301,366	-		GFF5310	0.66	-1.0
5,301,370	-		GFF5310	0.66	-0.9
5,301,370	-		GFF5310	0.66	-0.2
5,301,370	-		GFF5310	0.66	-0.9
5,301,372	-		GFF5310	0.66	+1.3
5,301,376	+		GFF5310	0.66	+0.2
5,301,376	+		GFF5310	0.66	-0.4
5,301,376	-		GFF5310	0.66	-1.7
5,301,389	-		GFF5310	0.66	-1.0
5,301,403	-		GFF5310	0.67	+0.3
5,301,427	+		GFF5310	0.68	-1.1
5,301,429	+		GFF5310	0.68	+0.3
5,301,435	-		GFF5310	0.68	-2.3
5,301,435	-		GFF5310	0.68	-2.1
5,301,435	-		GFF5310	0.68	-0.8
5,301,440	-		GFF5310	0.69	-0.3
5,301,445	-		GFF5310	0.69	+0.7
5,301,445	-		GFF5310	0.69	+0.3
5,301,451	+		GFF5310	0.69	+1.0
5,301,451	+		GFF5310	0.69	+0.4
5,301,459	-		GFF5310	0.69	-2.1
5,301,468	+		GFF5310	0.70	+0.4
5,301,468	+		GFF5310	0.70	+0.7
5,301,468	-		GFF5310	0.70	-1.9
5,301,480	+		GFF5310	0.70	-1.2
5,301,488	+		GFF5310	0.70	-1.2
5,301,488	-		GFF5310	0.70	-1.1
5,301,488	-		GFF5310	0.70	-1.1
5,301,496	-		GFF5310	0.71	+0.3
5,301,496	-		GFF5310	0.71	-0.5
5,301,497	-		GFF5310	0.71	-1.0
5,301,508	+		GFF5310	0.71	+1.1
5,301,528	-		GFF5310	0.72	-1.9
5,301,565	-		GFF5310	0.74	-0.1
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5,301,754	+		GFF5310	0.81	-1.7
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5,301,755	-		GFF5310	0.81	-1.5
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5,301,783	-		GFF5310	0.82	-0.1
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5,301,797	-		GFF5310	0.83	+1.2
5,301,801	+		GFF5310	0.83	-1.7
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5,301,853	+		GFF5310	0.85	-2.8
5,301,873	+		GFF5310	0.86	+0.0
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5,301,967	-				-0.9
5,301,973	+				-2.2
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5,302,025	-				+0.8
5,302,041	-				+0.2
5,302,042	-				-1.2
5,302,042	-				-1.1
5,302,079	-				-1.7
5,302,080	-				-2.1
5,302,082	+				+0.8
5,302,090	-				-1.2
5,302,099	-				-2.3
5,302,099	-				+0.6
5,302,099	-				-1.5
5,302,099	-				-0.3
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5,302,107	+				+0.9
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5,302,109	-				-1.2
5,302,109	-				-0.8
5,302,126	+				-0.7
5,302,126	+				+1.3
5,302,126	+				-1.0
5,302,126	+				-0.9
5,302,126	+				-1.9
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5,302,126	+				-0.8
5,302,126	+				-0.2
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5,302,134	-				-1.1
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5,302,134	-				-0.3
5,302,134	-				-0.9
5,302,134	-				+0.8
5,302,134	-				-1.7
5,302,134	-				-0.4
5,302,134	-				+0.5
5,302,149	+				-0.4
5,302,157	-				-1.1
5,302,158	+				-0.2
5,302,159	+				+0.9
5,302,171	-				-0.8
5,302,171	-				-1.5
5,302,215	-				+0.3
5,302,217	+				-1.3
5,302,217	+				+0.5
5,302,217	+				+0.2
5,302,222	+				-0.1
5,302,225	-				+0.1
5,302,230	-				-1.5
5,302,235	-				-1.4
5,302,237	+				+1.2
5,302,252	-				+0.2
5,302,258	-				+1.3
5,302,258	-				-1.1
5,302,260	+				-1.7
5,302,263	-				+0.1
5,302,292	-				-1.5
5,302,294	-				+0.7
5,302,306	+				-1.7
5,302,314	-				+0.7
5,302,316	+				-0.9
5,302,316	+				+0.3
5,302,316	+				+1.1
5,302,316	+				-1.5
5,302,316	+				-2.9
5,302,316	+				-0.4
5,302,316	+				-1.6
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5,302,598	+		GFF5311	0.34	-1.9
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5,302,598	+		GFF5311	0.34	+0.0
5,302,606	-		GFF5311	0.35	-0.8
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5,302,625	+		GFF5311	0.37	-1.1
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5,302,633	-		GFF5311	0.38	-1.7
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5,302,864	+		GFF5311	0.58	-1.5
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5,303,156	+		GFF5311	0.84	-1.1
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