Strain Fitness in Sphingobium sp. HT1-2 around GFF5212

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5211 and GFF5212 overlap by 8 nucleotidesGFF5212 and GFF5213 overlap by 4 nucleotidesGFF5213 and GFF5214 are separated by 27 nucleotides GFF5211 - Enoyl-CoA hydratase / Phosphate acetyltransferase (EC 2.3.1.8), at 5,207,058 to 5,208,485 GFF5211 GFF5212 - Acetate kinase (EC 2.7.2.1), at 5,208,478 to 5,209,668 GFF5212 GFF5213 - Enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9), at 5,209,665 to 5,210,438 GFF5213 GFF5214 - hypothetical protein, at 5,210,466 to 5,210,885 GFF5214 Position (kb) 5208 5209 5210Strain fitness (log2 ratio) -2 -1 0 1 2at 5207.576 kb on + strand, within GFF5211at 5207.576 kb on + strand, within GFF5211at 5207.581 kb on + strand, within GFF5211at 5207.591 kb on + strand, within GFF5211at 5207.598 kb on + strand, within GFF5211at 5207.647 kb on - strand, within GFF5211at 5207.647 kb on - strand, within GFF5211at 5207.683 kb on + strand, within GFF5211at 5207.765 kb on - strand, within GFF5211at 5207.770 kb on - strand, within GFF5211at 5207.842 kb on + strand, within GFF5211at 5207.852 kb on + strand, within GFF5211at 5207.862 kb on + strand, within GFF5211at 5207.899 kb on + strand, within GFF5211at 5207.913 kb on + strand, within GFF5211at 5207.914 kb on + strand, within GFF5211at 5207.935 kb on + strand, within GFF5211at 5207.948 kb on + strand, within GFF5211at 5207.985 kb on + strand, within GFF5211at 5207.985 kb on + strand, within GFF5211at 5207.985 kb on + strand, within GFF5211at 5207.990 kb on + strand, within GFF5211at 5207.990 kb on + strand, within GFF5211at 5207.993 kb on - strand, within GFF5211at 5207.993 kb on - strand, within GFF5211at 5207.998 kb on - strand, within GFF5211at 5208.022 kb on + strand, within GFF5211at 5208.022 kb on + strand, within GFF5211at 5208.030 kb on - strand, within GFF5211at 5208.040 kb on + strand, within GFF5211at 5208.048 kb on - strand, within GFF5211at 5208.050 kb on + strand, within GFF5211at 5208.050 kb on + strand, within GFF5211at 5208.050 kb on + strand, within GFF5211at 5208.050 kb on + strand, within GFF5211at 5208.050 kb on + strand, within GFF5211at 5208.050 kb on + strand, within GFF5211at 5208.050 kb on + strand, within GFF5211at 5208.058 kb on - strand, within GFF5211at 5208.058 kb on - strand, within GFF5211at 5208.058 kb on - strand, within GFF5211at 5208.058 kb on - strand, within GFF5211at 5208.058 kb on - strand, within GFF5211at 5208.103 kb on + strand, within GFF5211at 5208.133 kb on - strand, within GFF5211at 5208.133 kb on - strand, within GFF5211at 5208.133 kb on - strand, within GFF5211at 5208.133 kb on - strand, within GFF5211at 5208.134 kb on + strand, within GFF5211at 5208.149 kb on + strand, within GFF5211at 5208.149 kb on + strand, within GFF5211at 5208.149 kb on + strand, within GFF5211at 5208.157 kb on - strand, within GFF5211at 5208.157 kb on - strand, within GFF5211at 5208.172 kb on - strand, within GFF5211at 5208.349 kb on + strandat 5208.354 kb on - strandat 5208.363 kb on + strandat 5208.442 kb on - strandat 5208.460 kb on + strandat 5208.460 kb on + strandat 5208.468 kb on - strandat 5208.468 kb on - strandat 5208.478 kb on - strandat 5208.496 kb on - strandat 5208.550 kb on + strandat 5208.550 kb on + strandat 5208.556 kb on - strandat 5208.560 kb on + strandat 5208.593 kb on + strandat 5208.606 kb on + strand, within GFF5212at 5208.637 kb on - strand, within GFF5212at 5208.637 kb on - strand, within GFF5212at 5208.637 kb on - strand, within GFF5212at 5208.637 kb on - strand, within GFF5212at 5208.648 kb on - strand, within GFF5212at 5208.695 kb on - strand, within GFF5212at 5208.717 kb on - strand, within GFF5212at 5208.733 kb on - strand, within GFF5212at 5208.748 kb on - strand, within GFF5212at 5208.748 kb on - strand, within GFF5212at 5208.765 kb on - strand, within GFF5212at 5208.804 kb on + strand, within GFF5212at 5208.813 kb on - strand, within GFF5212at 5208.825 kb on + strand, within GFF5212at 5208.833 kb on - strand, within GFF5212at 5208.881 kb on + strand, within GFF5212at 5208.881 kb on + strand, within GFF5212at 5209.072 kb on + strand, within GFF5212at 5209.086 kb on - strand, within GFF5212at 5209.189 kb on + strand, within GFF5212at 5209.219 kb on - strand, within GFF5212at 5209.224 kb on + strand, within GFF5212at 5209.239 kb on + strand, within GFF5212at 5209.245 kb on + strand, within GFF5212at 5209.262 kb on + strand, within GFF5212at 5209.264 kb on + strand, within GFF5212at 5209.275 kb on + strand, within GFF5212at 5209.283 kb on - strand, within GFF5212at 5209.294 kb on - strand, within GFF5212at 5209.377 kb on - strand, within GFF5212at 5209.429 kb on + strand, within GFF5212at 5209.443 kb on + strand, within GFF5212at 5209.482 kb on - strand, within GFF5212at 5209.517 kb on + strand, within GFF5212at 5209.534 kb on + strand, within GFF5212at 5209.542 kb on + strand, within GFF5212at 5209.550 kb on - strandat 5209.550 kb on - strandat 5209.592 kb on + strandat 5209.600 kb on - strandat 5209.701 kb on - strandat 5209.712 kb on - strandat 5209.761 kb on - strand, within GFF5213at 5209.834 kb on + strand, within GFF5213at 5209.842 kb on - strand, within GFF5213at 5209.894 kb on + strand, within GFF5213at 5209.904 kb on + strand, within GFF5213at 5209.912 kb on - strand, within GFF5213at 5209.912 kb on - strand, within GFF5213at 5209.932 kb on - strand, within GFF5213at 5209.998 kb on + strand, within GFF5213at 5210.006 kb on - strand, within GFF5213at 5210.015 kb on + strand, within GFF5213at 5210.096 kb on - strand, within GFF5213at 5210.153 kb on + strand, within GFF5213at 5210.161 kb on - strand, within GFF5213at 5210.231 kb on - strand, within GFF5213at 5210.233 kb on + strand, within GFF5213at 5210.241 kb on - strand, within GFF5213at 5210.252 kb on - strand, within GFF5213at 5210.259 kb on + strand, within GFF5213at 5210.318 kb on + strand, within GFF5213at 5210.318 kb on + strand, within GFF5213at 5210.332 kb on - strand, within GFF5213at 5210.408 kb on + strandat 5210.434 kb on - strandat 5210.435 kb on - strandat 5210.453 kb on + strandat 5210.565 kb on + strand, within GFF5214

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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5,207,576 + GFF5211 0.36 +0.7
5,207,576 + GFF5211 0.36 -1.0
5,207,581 + GFF5211 0.37 +0.9
5,207,591 + GFF5211 0.37 -0.2
5,207,598 + GFF5211 0.38 -1.9
5,207,647 - GFF5211 0.41 -1.1
5,207,647 - GFF5211 0.41 -0.7
5,207,683 + GFF5211 0.44 -1.0
5,207,765 - GFF5211 0.50 +0.7
5,207,770 - GFF5211 0.50 -1.3
5,207,842 + GFF5211 0.55 +0.6
5,207,852 + GFF5211 0.56 +1.5
5,207,862 + GFF5211 0.56 -0.6
5,207,899 + GFF5211 0.59 -1.1
5,207,913 + GFF5211 0.60 +0.8
5,207,914 + GFF5211 0.60 +1.2
5,207,935 + GFF5211 0.61 -0.9
5,207,948 + GFF5211 0.62 -0.8
5,207,985 + GFF5211 0.65 +1.2
5,207,985 + GFF5211 0.65 +0.9
5,207,985 + GFF5211 0.65 +0.5
5,207,990 + GFF5211 0.65 +0.2
5,207,990 + GFF5211 0.65 +0.9
5,207,993 - GFF5211 0.65 +0.7
5,207,993 - GFF5211 0.65 -0.9
5,207,998 - GFF5211 0.66 +1.5
5,208,022 + GFF5211 0.68 +0.6
5,208,022 + GFF5211 0.68 +1.0
5,208,030 - GFF5211 0.68 -0.4
5,208,040 + GFF5211 0.69 -1.3
5,208,048 - GFF5211 0.69 +0.9
5,208,050 + GFF5211 0.69 -0.1
5,208,050 + GFF5211 0.69 +0.1
5,208,050 + GFF5211 0.69 +1.3
5,208,050 + GFF5211 0.69 -0.3
5,208,050 + GFF5211 0.69 -0.3
5,208,050 + GFF5211 0.69 -0.1
5,208,050 + GFF5211 0.69 +0.5
5,208,058 - GFF5211 0.70 +0.9
5,208,058 - GFF5211 0.70 -0.4
5,208,058 - GFF5211 0.70 +1.1
5,208,058 - GFF5211 0.70 +0.4
5,208,058 - GFF5211 0.70 +0.4
5,208,103 + GFF5211 0.73 -0.7
5,208,133 - GFF5211 0.75 +1.0
5,208,133 - GFF5211 0.75 +1.4
5,208,133 - GFF5211 0.75 -0.3
5,208,133 - GFF5211 0.75 +0.1
5,208,134 + GFF5211 0.75 -0.1
5,208,149 + GFF5211 0.76 -0.9
5,208,149 + GFF5211 0.76 +1.0
5,208,149 + GFF5211 0.76 +0.2
5,208,157 - GFF5211 0.77 +0.7
5,208,157 - GFF5211 0.77 -1.2
5,208,172 - GFF5211 0.78 +2.5
5,208,349 + +0.4
5,208,354 - +1.2
5,208,363 + +0.3
5,208,442 - +0.6
5,208,460 + +0.6
5,208,460 + -0.6
5,208,468 - -0.4
5,208,468 - +1.9
5,208,478 - +0.4
5,208,496 - +0.9
5,208,550 + -1.8
5,208,550 + -0.1
5,208,556 - +1.2
5,208,560 + +1.2
5,208,593 + -0.4
5,208,606 + GFF5212 0.11 +0.4
5,208,637 - GFF5212 0.13 +0.0
5,208,637 - GFF5212 0.13 +0.9
5,208,637 - GFF5212 0.13 -0.1
5,208,637 - GFF5212 0.13 +1.2
5,208,648 - GFF5212 0.14 +1.9
5,208,695 - GFF5212 0.18 +0.3
5,208,717 - GFF5212 0.20 +0.9
5,208,733 - GFF5212 0.21 +0.9
5,208,748 - GFF5212 0.23 +1.9
5,208,748 - GFF5212 0.23 -0.3
5,208,765 - GFF5212 0.24 +0.2
5,208,804 + GFF5212 0.27 -0.2
5,208,813 - GFF5212 0.28 +1.4
5,208,825 + GFF5212 0.29 -1.5
5,208,833 - GFF5212 0.30 -0.1
5,208,881 + GFF5212 0.34 -0.7
5,208,881 + GFF5212 0.34 +0.7
5,209,072 + GFF5212 0.50 +1.2
5,209,086 - GFF5212 0.51 +0.8
5,209,189 + GFF5212 0.60 -0.6
5,209,219 - GFF5212 0.62 +0.4
5,209,224 + GFF5212 0.63 -0.4
5,209,239 + GFF5212 0.64 +0.5
5,209,245 + GFF5212 0.64 -0.3
5,209,262 + GFF5212 0.66 +1.0
5,209,264 + GFF5212 0.66 +1.5
5,209,275 + GFF5212 0.67 +1.1
5,209,283 - GFF5212 0.68 -0.3
5,209,294 - GFF5212 0.69 +1.4
5,209,377 - GFF5212 0.75 -1.3
5,209,429 + GFF5212 0.80 +1.4
5,209,443 + GFF5212 0.81 +0.5
5,209,482 - GFF5212 0.84 +0.4
5,209,517 + GFF5212 0.87 -0.8
5,209,534 + GFF5212 0.89 -1.5
5,209,542 + GFF5212 0.89 +0.9
5,209,550 - -0.1
5,209,550 - -0.1
5,209,592 + +0.3
5,209,600 - -0.3
5,209,701 - -0.4
5,209,712 - -2.5
5,209,761 - GFF5213 0.12 -2.3
5,209,834 + GFF5213 0.22 +2.2
5,209,842 - GFF5213 0.23 -2.1
5,209,894 + GFF5213 0.30 -0.1
5,209,904 + GFF5213 0.31 +1.7
5,209,912 - GFF5213 0.32 +1.4
5,209,912 - GFF5213 0.32 -1.4
5,209,932 - GFF5213 0.34 +1.1
5,209,998 + GFF5213 0.43 +0.1
5,210,006 - GFF5213 0.44 +0.6
5,210,015 + GFF5213 0.45 -1.5
5,210,096 - GFF5213 0.56 -0.9
5,210,153 + GFF5213 0.63 +0.7
5,210,161 - GFF5213 0.64 +1.8
5,210,231 - GFF5213 0.73 +0.9
5,210,233 + GFF5213 0.73 +0.0
5,210,241 - GFF5213 0.74 +0.9
5,210,252 - GFF5213 0.76 -1.0
5,210,259 + GFF5213 0.77 +1.7
5,210,318 + GFF5213 0.84 +0.6
5,210,318 + GFF5213 0.84 -0.5
5,210,332 - GFF5213 0.86 -0.5
5,210,408 + +1.4
5,210,434 - +0.3
5,210,435 - -0.0
5,210,453 + +1.5
5,210,565 + GFF5214 0.24 +0.1

Or see this region's nucleotide sequence