Strain Fitness in Sphingobium sp. HT1-2 around GFF5210

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,204,304	+				+0.2
5,204,305	-				-2.4
5,204,310	+				+0.4
5,204,312	-				+0.9
5,204,391	-				-0.8
5,204,432	+				-1.1
5,204,438	-				-1.2
5,204,477	-				-2.1
5,204,512	+				-1.7
5,204,519	+				-0.7
5,204,547	+				-0.8
5,204,651	-		GFF5208	0.30	-1.2
5,204,661	-		GFF5208	0.33	+1.0
5,204,716	+		GFF5208	0.46	-0.9
5,204,716	+		GFF5208	0.46	+0.3
5,204,716	+		GFF5208	0.46	+0.7
5,204,724	-		GFF5208	0.48	-1.4
5,204,724	-		GFF5208	0.48	+0.1
5,204,724	-		GFF5208	0.48	+0.2
5,204,724	-		GFF5208	0.48	-0.9
5,204,733	+		GFF5208	0.51	+0.9
5,204,750	+		GFF5208	0.55	-0.8
5,204,758	-		GFF5208	0.57	+0.0
5,204,758	-		GFF5208	0.57	+0.6
5,204,793	-		GFF5208	0.66	+0.2
5,204,799	-		GFF5208	0.67	-0.1
5,204,821	+		GFF5208	0.73	-1.1
5,204,827	-		GFF5208	0.74	+0.3
5,204,841	-		GFF5208	0.78	-1.0
5,204,841	-		GFF5208	0.78	-0.3
5,204,873	-		GFF5208	0.86	+0.6
5,204,940	-				+0.1
5,204,941	+				-0.5
5,204,946	+		GFF5209	0.10	+0.2
5,204,946	+		GFF5209	0.10	-0.6
5,204,946	+		GFF5209	0.10	-0.3
5,204,949	-		GFF5209	0.12	-0.8
5,204,949	-		GFF5209	0.12	-1.0
5,204,951	+		GFF5209	0.13	-0.0
5,204,954	-		GFF5209	0.14	-1.4
5,204,954	-		GFF5209	0.14	+1.3
5,204,954	-		GFF5209	0.14	-2.6
5,204,954	-		GFF5209	0.14	+0.8
5,204,954	-		GFF5209	0.14	+0.2
5,204,954	-		GFF5209	0.14	-1.5
5,204,959	-		GFF5209	0.16	+0.4
5,204,959	-		GFF5209	0.16	-0.4
5,204,959	-		GFF5209	0.16	-1.3
5,204,971	+		GFF5209	0.22	-2.2
5,205,073	+		GFF5209	0.68	+0.7
5,205,121	-		GFF5209	0.89	+0.2
5,205,176	+				-1.0
5,205,178	+				-0.8
5,205,183	+				-0.7
5,205,184	-				+1.5
5,205,193	+				-2.1
5,205,200	+				-0.8
5,205,212	+				-0.5
5,205,222	+				+0.2
5,205,230	+				-1.7
5,205,232	+				-1.5
5,205,232	+				-0.0
5,205,237	+				-0.2
5,205,237	+				-0.7
5,205,237	+				-0.3
5,205,237	+				+0.5
5,205,237	+				-0.7
5,205,237	+				-1.2
5,205,237	+				-1.2
5,205,238	-				-1.1
5,205,239	+				-1.5
5,205,239	+				-0.6
5,205,240	-				+0.4
5,205,245	-				+0.1
5,205,245	-				-0.1
5,205,245	-				+0.7
5,205,245	-				+0.7
5,205,245	-				-1.5
5,205,245	-				-1.1
5,205,245	-				-1.6
5,205,245	-				+0.3
5,205,247	-				+0.6
5,205,247	-				-1.5
5,205,247	-				-1.0
5,205,249	+				-1.1
5,205,249	+				-0.9
5,205,256	+				-1.1
5,205,325	-				-1.9
5,205,325	-				-1.0
5,205,344	+				-0.5
5,205,348	-				-0.5
5,205,359	-				-0.0
5,205,391	+				-2.0
5,205,391	+				+0.3
5,205,391	+				+0.5
5,205,394	-				+0.9
5,205,399	-				+0.3
5,205,399	-				+1.3
5,205,399	-				-0.1
5,205,399	-				-1.6
5,205,399	-				+0.1
5,205,422	+				+1.3
5,205,422	+				-1.1
5,205,422	+				-0.8
5,205,422	+				+0.9
5,205,422	+				+0.0
5,205,422	+				-1.1
5,205,444	-				-1.5
5,205,460	-				-0.3
5,205,522	+		GFF5210	0.12	-1.2
5,205,522	+		GFF5210	0.12	+0.3
5,205,522	+		GFF5210	0.12	-1.0
5,205,547	+		GFF5210	0.14	-2.6
5,205,600	+		GFF5210	0.17	+0.3
5,205,602	+		GFF5210	0.17	+0.5
5,205,608	-		GFF5210	0.17	-0.7
5,205,608	-		GFF5210	0.17	-0.7
5,205,616	+		GFF5210	0.18	-0.9
5,205,630	+		GFF5210	0.19	+0.2
5,205,638	-		GFF5210	0.19	+0.5
5,205,686	-		GFF5210	0.22	-0.2
5,205,691	+		GFF5210	0.22	-0.1
5,205,709	-		GFF5210	0.23	-1.3
5,205,719	-		GFF5210	0.24	+0.8
5,205,757	-		GFF5210	0.26	+0.3
5,205,760	+		GFF5210	0.26	+0.2
5,205,775	+		GFF5210	0.27	-1.2
5,205,775	+		GFF5210	0.27	-0.5
5,205,778	-		GFF5210	0.27	-0.7
5,205,778	-		GFF5210	0.27	+0.1
5,205,783	-		GFF5210	0.27	-1.3
5,205,810	+		GFF5210	0.29	+0.1
5,205,817	+		GFF5210	0.29	-0.9
5,205,818	-		GFF5210	0.29	-0.9
5,205,821	+		GFF5210	0.30	-1.1
5,205,829	-		GFF5210	0.30	-1.1
5,205,829	-		GFF5210	0.30	-1.3
5,205,849	+		GFF5210	0.31	+0.8
5,205,884	+		GFF5210	0.33	-0.5
5,205,901	-		GFF5210	0.34	-1.1
5,205,901	-		GFF5210	0.34	-0.6
5,205,901	-		GFF5210	0.34	+0.3
5,205,929	-		GFF5210	0.36	-2.0
5,205,952	+		GFF5210	0.37	-0.7
5,205,960	-		GFF5210	0.38	-0.3
5,205,965	+		GFF5210	0.38	-0.8
5,206,002	+		GFF5210	0.40	-0.7
5,206,005	-		GFF5210	0.40	+1.1
5,206,005	-		GFF5210	0.40	-0.7
5,206,021	-		GFF5210	0.41	+0.3
5,206,045	+		GFF5210	0.42	-0.1
5,206,045	+		GFF5210	0.42	-1.5
5,206,049	+		GFF5210	0.43	-1.6
5,206,086	+		GFF5210	0.45	-1.5
5,206,094	+		GFF5210	0.45	-0.7
5,206,094	+		GFF5210	0.45	-1.2
5,206,094	+		GFF5210	0.45	+0.1
5,206,094	+		GFF5210	0.45	+0.9
5,206,094	+		GFF5210	0.45	+0.2
5,206,094	+		GFF5210	0.45	-0.5
5,206,094	+		GFF5210	0.45	-0.5
5,206,094	+		GFF5210	0.45	+0.4
5,206,094	+		GFF5210	0.45	-2.6
5,206,094	+		GFF5210	0.45	-0.2
5,206,094	+		GFF5210	0.45	-1.8
5,206,094	+		GFF5210	0.45	+1.8
5,206,094	+		GFF5210	0.45	-1.4
5,206,094	+		GFF5210	0.45	-1.1
5,206,094	+		GFF5210	0.45	-2.3
5,206,094	+		GFF5210	0.45	+0.2
5,206,094	+		GFF5210	0.45	-0.7
5,206,096	+		GFF5210	0.45	-1.2
5,206,096	+		GFF5210	0.45	+0.0
5,206,097	-		GFF5210	0.45	+0.9
5,206,101	+		GFF5210	0.46	-0.8
5,206,102	-		GFF5210	0.46	-1.9
5,206,102	-		GFF5210	0.46	+0.6
5,206,102	-		GFF5210	0.46	-0.5
5,206,102	-		GFF5210	0.46	-2.0
5,206,102	-		GFF5210	0.46	-0.9
5,206,102	-		GFF5210	0.46	-0.9
5,206,102	-		GFF5210	0.46	+0.2
5,206,102	-		GFF5210	0.46	-1.1
5,206,102	-		GFF5210	0.46	+0.1
5,206,102	-		GFF5210	0.46	+0.0
5,206,102	-		GFF5210	0.46	-0.2
5,206,102	-		GFF5210	0.46	-0.3
5,206,102	-		GFF5210	0.46	-0.7
5,206,102	-		GFF5210	0.46	+0.7
5,206,102	-		GFF5210	0.46	+0.8
5,206,102	-		GFF5210	0.46	-2.5
5,206,102	-		GFF5210	0.46	+0.3
5,206,102	-		GFF5210	0.46	+1.1
5,206,102	-		GFF5210	0.46	+0.7
5,206,102	-		GFF5210	0.46	-1.2
5,206,104	-		GFF5210	0.46	+0.3
5,206,104	-		GFF5210	0.46	-0.8
5,206,114	-		GFF5210	0.46	-0.9
5,206,117	-		GFF5210	0.46	-2.0
5,206,129	-		GFF5210	0.47	-0.2
5,206,133	-		GFF5210	0.47	-0.7
5,206,229	-		GFF5210	0.53	-0.2
5,206,298	+		GFF5210	0.57	-1.0
5,206,305	+		GFF5210	0.57	+0.6
5,206,306	-		GFF5210	0.57	-1.8
5,206,310	+		GFF5210	0.57	-1.3
5,206,315	+		GFF5210	0.58	-1.1
5,206,315	+		GFF5210	0.58	-1.0
5,206,315	+		GFF5210	0.58	-1.9
5,206,315	+		GFF5210	0.58	-0.0
5,206,330	-		GFF5210	0.59	-0.6
5,206,345	+		GFF5210	0.59	+0.7
5,206,360	+		GFF5210	0.60	+0.5
5,206,360	+		GFF5210	0.60	-1.7
5,206,360	+		GFF5210	0.60	-1.2
5,206,360	+		GFF5210	0.60	+0.5
5,206,368	-		GFF5210	0.61	+0.3
5,206,378	-		GFF5210	0.61	-1.0
5,206,378	-		GFF5210	0.61	-0.4
5,206,395	-		GFF5210	0.62	-1.5
5,206,406	+		GFF5210	0.63	-0.9
5,206,423	+		GFF5210	0.64	+1.0
5,206,425	+		GFF5210	0.64	+0.2
5,206,430	+		GFF5210	0.64	-0.2
5,206,442	+		GFF5210	0.65	+1.5
5,206,476	+		GFF5210	0.67	+0.5
5,206,476	+		GFF5210	0.67	+0.7
5,206,496	+		GFF5210	0.68	-0.5
5,206,508	+		GFF5210	0.69	-0.8
5,206,554	+		GFF5210	0.71	-1.9
5,206,566	+		GFF5210	0.72	-0.5
5,206,566	+		GFF5210	0.72	+0.2
5,206,572	+		GFF5210	0.72	-1.3
5,206,574	-		GFF5210	0.73	-0.1
5,206,574	-		GFF5210	0.73	-0.7
5,206,579	-		GFF5210	0.73	+0.6
5,206,579	-		GFF5210	0.73	-1.0
5,206,586	+		GFF5210	0.73	-0.8
5,206,634	+		GFF5210	0.76	-0.7
5,206,667	-		GFF5210	0.78	-0.7
5,206,671	+		GFF5210	0.78	+1.2
5,206,671	+		GFF5210	0.78	+1.2
5,206,671	+		GFF5210	0.78	-0.8
5,206,679	-		GFF5210	0.79	-0.7
5,206,689	-		GFF5210	0.79	-1.1
5,206,774	-		GFF5210	0.84	-0.2
5,206,789	-		GFF5210	0.85	+1.0
5,206,806	-		GFF5210	0.86	-1.0
5,206,820	+		GFF5210	0.87	+0.7
5,206,857	+		GFF5210	0.89	-0.4
5,206,864	-		GFF5210	0.89	-2.0
5,206,867	+		GFF5210	0.89	-0.9
5,206,870	-		GFF5210	0.89	+1.3
5,206,878	+		GFF5210	0.90	-1.5
5,206,889	-				+1.3
5,206,889	-				-0.2
5,206,890	+				-2.1
5,206,891	+				-0.2
5,206,900	+				-0.6
5,206,917	+				+0.1
5,206,917	+				+0.2
5,206,918	-				+0.8
5,206,925	-				-0.3
5,206,925	-				+0.1
5,206,925	-				-0.3
5,206,970	-				-0.3
5,206,980	+				+0.1
5,206,980	+				+0.2
5,207,006	-				+0.3
5,207,020	+				+0.2
5,207,028	-				+0.6
5,207,028	-				-0.1
5,207,048	+				-1.0
5,207,048	-				+0.2
5,207,055	+				-1.2
5,207,055	+				+0.3
5,207,055	+				-1.3
5,207,055	+				-0.3
5,207,056	-				+0.9
5,207,056	-				+0.2
5,207,063	-				+1.6
5,207,063	-				-0.6
5,207,063	-				-1.0
5,207,063	-				-0.8
5,207,063	-				-1.7
5,207,065	+				+0.7
5,207,065	+				+1.2
5,207,065	+				-1.1
5,207,065	+				-0.2
5,207,073	-				+0.7
5,207,073	-				-1.9
5,207,073	-				+1.4
5,207,121	+				+0.3
5,207,122	+				-1.7
5,207,130	-				-1.3
5,207,149	+				-1.0
5,207,151	+				-1.1
5,207,159	+				+0.4
5,207,159	-				+0.1
5,207,177	-				+0.2
5,207,177	-				-0.0
5,207,177	-				+0.8
5,207,195	+				-0.7
5,207,205	+		GFF5211	0.10	-1.7
5,207,205	+		GFF5211	0.10	+1.5
5,207,212	-		GFF5211	0.11	-1.4
5,207,235	+		GFF5211	0.12	-1.0
5,207,243	-		GFF5211	0.13	+0.8
5,207,262	+		GFF5211	0.14	-1.1
5,207,270	-		GFF5211	0.15	-1.0
5,207,270	-		GFF5211	0.15	-2.5
5,207,275	-		GFF5211	0.15	-0.9
5,207,275	-		GFF5211	0.15	-0.3
5,207,279	+		GFF5211	0.15	+0.4
5,207,279	+		GFF5211	0.15	-0.9
5,207,284	+		GFF5211	0.16	+1.1
5,207,294	+		GFF5211	0.17	-1.8
5,207,294	+		GFF5211	0.17	+0.3
5,207,299	+		GFF5211	0.17	-0.9
5,207,302	-		GFF5211	0.17	-0.7
5,207,305	+		GFF5211	0.17	-0.8
5,207,307	-		GFF5211	0.17	+0.6
5,207,314	+		GFF5211	0.18	-0.0
5,207,385	+		GFF5211	0.23	-0.8
5,207,415	+		GFF5211	0.25	+0.5
5,207,423	-		GFF5211	0.26	-0.7
5,207,423	-		GFF5211	0.26	-0.3
5,207,431	+		GFF5211	0.26	-1.3
5,207,439	-		GFF5211	0.27	-0.3
5,207,444	+		GFF5211	0.27	-1.3
5,207,445	+		GFF5211	0.27	-0.3
5,207,468	+		GFF5211	0.29	+0.3
5,207,469	+		GFF5211	0.29	-0.3
5,207,476	-		GFF5211	0.29	-0.9
5,207,496	-		GFF5211	0.31	+1.3
5,207,504	+		GFF5211	0.31	-0.3
5,207,516	+		GFF5211	0.32	-1.3
5,207,576	+		GFF5211	0.36	+0.3
5,207,576	+		GFF5211	0.36	-1.4
5,207,581	+		GFF5211	0.37	+1.2
5,207,591	+		GFF5211	0.37	-0.1
5,207,591	+		GFF5211	0.37	-0.6
5,207,598	+		GFF5211	0.38	-2.2
5,207,639	+		GFF5211	0.41	-0.7
5,207,647	-		GFF5211	0.41	-1.5
5,207,647	-		GFF5211	0.41	-0.2
5,207,647	-		GFF5211	0.41	-1.1
5,207,683	+		GFF5211	0.44	+0.5
5,207,683	+		GFF5211	0.44	-1.4
5,207,683	+		GFF5211	0.44	-2.4
5,207,691	-		GFF5211	0.44	-0.5
5,207,694	+		GFF5211	0.45	-1.1
5,207,746	-		GFF5211	0.48	+0.8
5,207,757	+		GFF5211	0.49	-0.7
5,207,762	+		GFF5211	0.49	+1.7
5,207,765	-		GFF5211	0.50	+0.3
5,207,770	-		GFF5211	0.50	-1.7
5,207,770	-		GFF5211	0.50	-0.4
5,207,777	+		GFF5211	0.50	-1.2
5,207,827	-		GFF5211	0.54	+0.6
5,207,827	-		GFF5211	0.54	-0.1
5,207,842	+		GFF5211	0.55	+0.2
5,207,852	+		GFF5211	0.56	+1.1
5,207,862	+		GFF5211	0.56	-1.0
5,207,870	-		GFF5211	0.57	-1.1
5,207,875	+		GFF5211	0.57	-0.0
5,207,890	-		GFF5211	0.58	-1.0
5,207,899	+		GFF5211	0.59	-1.5
5,207,907	-		GFF5211	0.59	-1.4
5,207,907	-		GFF5211	0.59	+1.7
5,207,909	+		GFF5211	0.60	-0.9
5,207,909	+		GFF5211	0.60	-0.3
5,207,912	-		GFF5211	0.60	-0.7
5,207,913	+		GFF5211	0.60	+0.4
5,207,913	-		GFF5211	0.60	-0.8
5,207,935	+		GFF5211	0.61	-1.2
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