Strain Fitness in Sphingobium sp. HT1-2 around GFF5189

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,184,565	+		GFF5188	0.69	+0.8
5,184,618	-		GFF5188	0.71	+0.1
5,184,632	-		GFF5188	0.71	+0.7
5,184,638	+		GFF5188	0.71	+0.2
5,184,661	+		GFF5188	0.72	+0.0
5,184,674	+		GFF5188	0.73	-0.7
5,184,675	+		GFF5188	0.73	-1.6
5,184,675	+		GFF5188	0.73	-1.7
5,184,675	+		GFF5188	0.73	-1.7
5,184,682	-		GFF5188	0.73	-1.8
5,184,683	-		GFF5188	0.73	-0.9
5,184,684	+		GFF5188	0.73	-1.1
5,184,684	+		GFF5188	0.73	-0.3
5,184,684	+		GFF5188	0.73	-2.2
5,184,684	+		GFF5188	0.73	+0.7
5,184,684	+		GFF5188	0.73	+0.1
5,184,684	+		GFF5188	0.73	+1.8
5,184,684	+		GFF5188	0.73	-0.9
5,184,684	+		GFF5188	0.73	-0.1
5,184,684	+		GFF5188	0.73	-0.1
5,184,684	+		GFF5188	0.73	-1.1
5,184,684	+		GFF5188	0.73	-0.8
5,184,684	+		GFF5188	0.73	-1.4
5,184,684	+		GFF5188	0.73	-1.8
5,184,684	+		GFF5188	0.73	+0.8
5,184,684	+		GFF5188	0.73	-0.6
5,184,692	-		GFF5188	0.73	+0.7
5,184,692	-		GFF5188	0.73	-1.0
5,184,692	-		GFF5188	0.73	+0.1
5,184,692	-		GFF5188	0.73	-1.0
5,184,692	-		GFF5188	0.73	-0.2
5,184,692	-		GFF5188	0.73	-1.7
5,184,692	-		GFF5188	0.73	+1.0
5,184,692	-		GFF5188	0.73	+0.4
5,184,693	+		GFF5188	0.73	-0.7
5,184,700	+		GFF5188	0.73	-1.2
5,184,720	+		GFF5188	0.74	+0.2
5,184,727	+		GFF5188	0.74	+0.9
5,184,747	-		GFF5188	0.75	-0.6
5,184,748	-		GFF5188	0.75	+0.8
5,184,765	-		GFF5188	0.76	+0.0
5,184,789	-		GFF5188	0.76	+1.2
5,184,789	-		GFF5188	0.76	+0.3
5,184,797	-		GFF5188	0.77	-0.9
5,184,820	-		GFF5188	0.77	+0.1
5,184,849	+		GFF5188	0.78	-0.8
5,184,849	+		GFF5188	0.78	+0.4
5,184,849	+		GFF5188	0.78	-0.5
5,184,849	+		GFF5188	0.78	-0.8
5,184,857	+		GFF5188	0.79	-1.0
5,184,857	-		GFF5188	0.79	+0.3
5,184,857	-		GFF5188	0.79	-0.2
5,184,858	-		GFF5188	0.79	+0.4
5,184,859	+		GFF5188	0.79	-1.0
5,184,859	+		GFF5188	0.79	+1.4
5,184,900	-		GFF5188	0.80	-0.2
5,184,900	-		GFF5188	0.80	-1.3
5,184,926	-		GFF5188	0.81	-1.7
5,184,926	-		GFF5188	0.81	+0.3
5,184,926	-		GFF5188	0.81	-1.8
5,184,926	-		GFF5188	0.81	-1.1
5,184,934	+		GFF5188	0.81	+0.2
5,184,941	-		GFF5188	0.81	-1.0
5,184,945	+		GFF5188	0.81	-0.7
5,184,953	+		GFF5188	0.82	-0.8
5,184,954	-		GFF5188	0.82	+0.3
5,184,954	-		GFF5188	0.82	-1.8
5,184,961	-		GFF5188	0.82	-0.0
5,184,961	-		GFF5188	0.82	-0.3
5,184,961	-		GFF5188	0.82	+0.3
5,184,961	-		GFF5188	0.82	-0.9
5,184,968	-		GFF5188	0.82	-0.3
5,185,016	-		GFF5188	0.84	+0.6
5,185,026	-		GFF5188	0.84	-0.1
5,185,043	+		GFF5188	0.85	-0.3
5,185,070	+		GFF5188	0.86	-1.4
5,185,086	+		GFF5188	0.86	+0.3
5,185,102	-		GFF5188	0.87	-2.1
5,185,121	-		GFF5188	0.87	-2.0
5,185,134	+		GFF5188	0.88	+0.4
5,185,139	+		GFF5188	0.88	+0.6
5,185,142	-		GFF5188	0.88	-0.0
5,185,145	+		GFF5188	0.88	+1.0
5,185,145	+		GFF5188	0.88	-1.1
5,185,147	-		GFF5188	0.88	-1.4
5,185,154	-		GFF5188	0.88	-1.1
5,185,155	+		GFF5188	0.88	-0.7
5,185,161	-		GFF5188	0.88	-1.6
5,185,189	+		GFF5188	0.89	+0.9
5,185,199	+		GFF5188	0.90	-0.2
5,185,199	+		GFF5188	0.90	-1.8
5,185,207	-				-0.8
5,185,213	+				-0.9
5,185,223	+				-0.0
5,185,223	+				+0.7
5,185,223	+				-0.3
5,185,223	+				-0.0
5,185,223	+				+0.9
5,185,223	+				-2.4
5,185,223	+				+0.9
5,185,223	+				-1.1
5,185,223	+				-1.1
5,185,223	+				-1.5
5,185,223	+				+0.7
5,185,223	+				-0.5
5,185,223	+				-0.3
5,185,223	+				-0.8
5,185,223	+				-0.4
5,185,223	+				+0.2
5,185,223	+				+0.8
5,185,223	+				+0.4
5,185,223	+				-0.4
5,185,223	+				+0.2
5,185,223	+				-0.6
5,185,223	+				-0.7
5,185,223	+				-0.2
5,185,223	+				-0.0
5,185,223	+				-0.0
5,185,223	+				+1.6
5,185,223	+				-0.7
5,185,223	+				-1.1
5,185,223	+				+0.3
5,185,223	+				+0.8
5,185,223	+				-0.8
5,185,223	+				-0.7
5,185,223	+				+0.5
5,185,223	+				+1.8
5,185,223	+				-1.8
5,185,231	-				+0.5
5,185,231	-				+0.1
5,185,231	-				-0.2
5,185,231	-				-1.5
5,185,231	-				+0.3
5,185,231	-				-1.2
5,185,231	-				+1.4
5,185,231	-				-0.9
5,185,231	-				-0.7
5,185,231	-				-0.7
5,185,231	-				-0.0
5,185,231	-				-0.3
5,185,231	-				-0.7
5,185,231	-				-1.2
5,185,231	-				+0.1
5,185,231	-				-1.0
5,185,231	-				-0.2
5,185,231	-				-0.3
5,185,231	-				+0.1
5,185,231	-				-0.1
5,185,231	-				-0.8
5,185,231	-				-1.0
5,185,231	-				+0.8
5,185,244	-				-1.1
5,185,252	+				-0.2
5,185,252	+				-1.0
5,185,311	+				+0.8
5,185,311	+				-0.7
5,185,311	+				+1.0
5,185,311	+				-0.1
5,185,316	+				-0.7
5,185,319	-				-1.1
5,185,319	-				+0.7
5,185,319	-				+0.3
5,185,320	+				-1.1
5,185,383	+				+0.5
5,185,393	+				-0.6
5,185,396	-				+1.8
5,185,401	-				-1.2
5,185,401	-				+1.9
5,185,401	-				+1.8
5,185,401	-				-0.1
5,185,403	+				+0.6
5,185,408	+				-2.1
5,185,408	+				-0.7
5,185,411	-				+0.3
5,185,411	-				-1.0
5,185,411	-				-0.9
5,185,425	+				+0.3
5,185,425	+				-1.6
5,185,426	-				+0.6
5,185,426	-				-2.1
5,185,440	+				-1.8
5,185,440	+				-0.7
5,185,440	+				-0.7
5,185,440	+				+0.1
5,185,440	+				+0.4
5,185,440	+				+0.6
5,185,440	+				-0.8
5,185,440	+				-0.2
5,185,448	-				-0.6
5,185,448	-				-0.5
5,185,448	-				-0.5
5,185,458	+				-0.6
5,185,458	+				-0.7
5,185,458	-				-1.7
5,185,458	-				+1.0
5,185,471	-				-0.5
5,185,473	+				-0.3
5,185,473	+				-0.8
5,185,494	+				+0.5
5,185,494	+				-0.4
5,185,513	+				+0.4
5,185,521	-				-1.4
5,185,533	+				-0.8
5,185,543	+				-0.1
5,185,543	+				-0.5
5,185,543	+				-1.6
5,185,543	+				-0.7
5,185,543	+				-2.6
5,185,543	+				-1.0
5,185,543	+				+0.3
5,185,551	-				-0.8
5,185,551	-				-0.6
5,185,551	-				-0.6
5,185,551	-				+0.4
5,185,551	-				-1.3
5,185,551	-				+0.7
5,185,551	-				-0.9
5,185,553	+				-1.4
5,185,553	+				-1.4
5,185,553	+				-0.1
5,185,553	+				+0.1
5,185,558	+				-0.4
5,185,558	+				-1.0
5,185,566	-				-0.1
5,185,578	+				-0.7
5,185,583	+				+0.8
5,185,586	-				+0.4
5,185,586	-				-0.2
5,185,588	+				+0.4
5,185,588	+				+1.0
5,185,591	-				-1.6
5,185,596	-				-0.8
5,185,596	-				-0.4
5,185,596	-				+0.3
5,185,663	-		GFF5189	0.21	-0.6
5,185,688	-		GFF5189	0.25	-0.9
5,185,810	+		GFF5189	0.48	-1.2
5,185,810	+		GFF5189	0.48	-0.8
5,185,810	+		GFF5189	0.48	-1.5
5,185,810	+		GFF5189	0.48	+0.2
5,185,810	+		GFF5189	0.48	-0.8
5,185,810	+		GFF5189	0.48	+1.2
5,185,818	-		GFF5189	0.50	-0.9
5,185,827	+		GFF5189	0.52	-0.7
5,185,827	+		GFF5189	0.52	-1.3
5,185,830	-		GFF5189	0.52	-0.1
5,185,835	-		GFF5189	0.53	-1.2
5,185,835	-		GFF5189	0.53	+0.8
5,185,835	-		GFF5189	0.53	+1.8
5,185,845	+		GFF5189	0.55	-1.3
5,185,845	+		GFF5189	0.55	+0.6
5,185,851	+		GFF5189	0.56	-0.8
5,185,859	-		GFF5189	0.58	-0.5
5,185,864	-		GFF5189	0.59	+0.1
5,185,864	-		GFF5189	0.59	-1.1
5,185,874	+		GFF5189	0.60	-1.0
5,185,886	+		GFF5189	0.63	-0.5
5,185,886	+		GFF5189	0.63	-1.4
5,185,886	+		GFF5189	0.63	+0.1
5,185,891	+		GFF5189	0.64	+0.5
5,185,894	-		GFF5189	0.64	-1.6
5,185,894	-		GFF5189	0.64	-1.2
5,185,913	-		GFF5189	0.68	-0.4
5,185,918	-		GFF5189	0.69	-0.8
5,185,929	+		GFF5189	0.71	-1.1
5,185,929	+		GFF5189	0.71	-2.1
5,185,929	+		GFF5189	0.71	-0.4
5,185,937	-		GFF5189	0.72	-1.0
5,185,937	-		GFF5189	0.72	-2.2
5,185,937	-		GFF5189	0.72	-0.7
5,185,958	+		GFF5189	0.76	-1.8
5,185,958	+		GFF5189	0.76	-1.2
5,185,966	-		GFF5189	0.78	-1.8
5,185,966	-		GFF5189	0.78	-0.0
5,185,966	-		GFF5189	0.78	+0.4
5,185,983	-		GFF5189	0.81	-0.4
5,185,992	+		GFF5189	0.83	-0.2
5,186,000	-		GFF5189	0.84	+0.1
5,186,007	+		GFF5189	0.85	+0.3
5,186,017	+		GFF5189	0.87	-1.9
5,186,024	-		GFF5189	0.89	-0.8
5,186,062	-				+0.3
5,186,078	+				+0.9
5,186,095	-				-0.4
5,186,100	-				+0.3
5,186,106	+				-1.2
5,186,127	+				+0.4
5,186,162	+				+0.3
5,186,165	-				-2.0
5,186,182	+				-1.8
5,186,182	+				-1.1
5,186,190	-				-0.5
5,186,190	-				-2.0
5,186,190	-				-0.1
5,186,190	-				-1.7
5,186,205	+				-0.8
5,186,213	-				+1.2
5,186,282	+				-2.1
5,186,282	+				-0.3
5,186,282	+				-0.2
5,186,282	+				+0.8
5,186,283	-				-0.4
5,186,287	+				-3.2
5,186,290	-				-0.1
5,186,290	-				-0.6
5,186,290	-				-1.9
5,186,290	-				-1.7
5,186,290	-				-0.8
5,186,290	-				+0.4
5,186,290	-				-0.6
5,186,295	-				-1.8
5,186,324	-				+2.4
5,186,326	+				+0.4
5,186,346	-				-0.3
5,186,372	+				-0.1
5,186,372	+				+0.8
5,186,372	+				-0.6
5,186,372	+				-1.1
5,186,380	-				-0.2
5,186,380	-				-0.9
5,186,380	-				-1.2
5,186,380	-				+0.1
5,186,380	-				-1.0
5,186,380	-				-0.2
5,186,382	+				-0.9
5,186,385	-				-0.5
5,186,386	-				-0.7
5,186,390	-				-2.7
5,186,396	+				-0.2
5,186,619	+		GFF5190	0.29	-1.6
5,186,639	+		GFF5190	0.33	-0.6
5,186,641	+		GFF5190	0.33	-2.6
5,186,647	-		GFF5190	0.34	+1.4
5,186,647	-		GFF5190	0.34	-0.8
5,186,648	+		GFF5190	0.34	-2.1
5,186,656	+		GFF5190	0.36	+1.0
5,186,664	+		GFF5190	0.37	-2.0
5,186,664	+		GFF5190	0.37	-1.0
5,186,664	+		GFF5190	0.37	+0.4
5,186,672	-		GFF5190	0.39	-0.6
5,186,672	-		GFF5190	0.39	-1.2
5,186,672	-		GFF5190	0.39	-0.0
5,186,672	-		GFF5190	0.39	-0.9
5,186,701	+		GFF5190	0.44	-1.0
5,186,701	+		GFF5190	0.44	-0.7
5,186,703	+		GFF5190	0.45	-0.8
5,186,709	-		GFF5190	0.46	+0.1
5,186,709	-		GFF5190	0.46	+0.0
5,186,711	+		GFF5190	0.46	-1.6
5,186,711	+		GFF5190	0.46	-0.9
5,186,719	-		GFF5190	0.48	+0.2
5,186,719	-		GFF5190	0.48	-1.2
5,186,719	-		GFF5190	0.48	+0.2
5,186,719	-		GFF5190	0.48	+0.1
5,186,720	+		GFF5190	0.48	-1.8
5,186,764	+		GFF5190	0.56	+0.1
5,186,769	+		GFF5190	0.57	+1.0
5,186,771	+		GFF5190	0.57	-1.4
5,186,780	+		GFF5190	0.59	-2.4
5,186,785	+		GFF5190	0.60	-1.0
5,186,794	-		GFF5190	0.62	+0.5
5,186,800	+		GFF5190	0.63	+0.0
5,186,811	+		GFF5190	0.65	-1.1
5,186,811	+		GFF5190	0.65	-1.0
5,186,811	+		GFF5190	0.65	-1.6
5,186,811	+		GFF5190	0.65	-1.6
5,186,811	+		GFF5190	0.65	-0.2
5,186,811	+		GFF5190	0.65	-1.4
5,186,811	+		GFF5190	0.65	-0.0
5,186,812	-		GFF5190	0.65	-0.8
5,186,812	-		GFF5190	0.65	-1.2
5,186,813	-		GFF5190	0.65	-1.3
5,186,814	-		GFF5190	0.66	-0.6
5,186,819	-		GFF5190	0.66	+1.2
5,186,819	-		GFF5190	0.66	-0.8
5,186,819	-		GFF5190	0.66	-1.1
5,186,819	-		GFF5190	0.66	+0.1
5,186,819	-		GFF5190	0.66	-2.7
5,186,821	+		GFF5190	0.67	-1.2
5,186,821	+		GFF5190	0.67	+0.1
5,186,829	-		GFF5190	0.68	-0.8
5,186,829	-		GFF5190	0.68	-0.7
5,186,849	+		GFF5190	0.72	-0.5
5,186,873	+		GFF5190	0.77	-1.2
5,186,882	+		GFF5190	0.78	-1.0
5,186,885	-		GFF5190	0.79	-1.4
5,186,890	-		GFF5190	0.80	-1.4
5,186,893	+		GFF5190	0.80	+1.5
5,186,893	+		GFF5190	0.80	-0.7
5,186,893	+		GFF5190	0.80	-0.7
5,186,901	-		GFF5190	0.82	-0.2
5,186,901	-		GFF5190	0.82	-1.3
5,186,901	-		GFF5190	0.82	-0.5
5,186,901	-		GFF5190	0.82	-0.0
5,186,904	-		GFF5190	0.82	-2.2
5,186,910	+		GFF5190	0.84	-0.7
5,186,920	+		GFF5190	0.85	-0.9
5,186,926	+		GFF5190	0.87	+1.3
5,186,926	+		GFF5190	0.87	-0.2
5,186,926	+		GFF5190	0.87	+0.1
5,186,926	+		GFF5190	0.87	-0.5
5,186,928	+		GFF5190	0.87	-2.3
5,186,928	+		GFF5190	0.87	+0.2
5,186,934	-		GFF5190	0.88	-0.9
5,186,934	-		GFF5190	0.88	+1.1
5,186,936	+		GFF5190	0.89	-3.0
5,186,936	+		GFF5190	0.89	-0.5
5,186,936	+		GFF5190	0.89	-1.1
5,186,936	+		GFF5190	0.89	+0.3
5,186,936	-		GFF5190	0.89	+0.2
5,186,936	-		GFF5190	0.89	-1.2
5,186,936	-		GFF5190	0.89	-0.2
5,186,936	-		GFF5190	0.89	+1.1
5,186,937	-		GFF5190	0.89	-0.8
5,186,939	-		GFF5190	0.89	-1.4
5,186,939	-		GFF5190	0.89	-1.1
5,186,939	-		GFF5190	0.89	-0.6
5,186,939	-		GFF5190	0.89	-1.6
5,186,944	-				-1.7
5,186,944	-				-1.6
5,186,944	-				+1.0
5,186,944	-				-0.8
5,186,945	+				-1.9
5,186,953	-				-0.7
5,186,953	-				+0.6
5,186,963	+				-2.2
5,186,971	-				-2.1
5,186,971	-				+0.3
5,186,971	-				-1.4
5,186,986	-				-0.2
5,187,024	+				+0.0
5,187,032	-				-2.1
5,187,037	-				-0.7
5,187,057	+		GFF5191	0.10	+0.9
5,187,059	+		GFF5191	0.11	-0.7
5,187,059	+		GFF5191	0.11	-1.2
5,187,061	+		GFF5191	0.11	+0.3
5,187,062	+		GFF5191	0.11	-0.7
5,187,062	-		GFF5191	0.11	-1.0
5,187,067	-		GFF5191	0.12	+1.4
5,187,067	-		GFF5191	0.12	+0.1
5,187,074	-		GFF5191	0.13	-2.7