Strain Fitness in Sphingobium sp. HT1-2 around GFF5147

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,139,645	+		GFF5146	0.19	-1.3
5,139,656	+		GFF5146	0.20	+1.7
5,139,656	+		GFF5146	0.20	-0.8
5,139,656	+		GFF5146	0.20	-1.7
5,139,656	+		GFF5146	0.20	-0.3
5,139,656	+		GFF5146	0.20	+0.4
5,139,656	+		GFF5146	0.20	+0.1
5,139,656	+		GFF5146	0.20	-0.4
5,139,664	-		GFF5146	0.21	-1.2
5,139,664	-		GFF5146	0.21	+0.1
5,139,675	-		GFF5146	0.23	-2.4
5,139,677	+		GFF5146	0.23	+0.0
5,139,685	+		GFF5146	0.24	-0.5
5,139,691	-		GFF5146	0.25	-1.7
5,139,703	+		GFF5146	0.27	-1.0
5,139,703	-		GFF5146	0.27	+0.1
5,139,708	-		GFF5146	0.27	+0.3
5,139,708	-		GFF5146	0.27	-1.4
5,139,762	-		GFF5146	0.35	-0.7
5,139,769	-		GFF5146	0.36	+0.2
5,139,784	-		GFF5146	0.38	-1.4
5,139,784	-		GFF5146	0.38	-0.9
5,139,786	-		GFF5146	0.38	-0.9
5,139,799	-		GFF5146	0.40	+0.7
5,139,805	+		GFF5146	0.41	+0.6
5,139,828	-		GFF5146	0.44	-0.8
5,139,848	-		GFF5146	0.47	-1.8
5,139,850	+		GFF5146	0.47	-0.9
5,139,856	-		GFF5146	0.48	+1.5
5,139,872	+		GFF5146	0.50	-0.9
5,139,872	+		GFF5146	0.50	-0.2
5,139,877	+		GFF5146	0.51	-0.6
5,139,877	+		GFF5146	0.51	-1.8
5,139,880	-		GFF5146	0.51	-0.3
5,139,880	-		GFF5146	0.51	-0.9
5,139,880	-		GFF5146	0.51	-0.6
5,139,880	-		GFF5146	0.51	+0.5
5,139,885	-		GFF5146	0.52	+0.0
5,139,921	+		GFF5146	0.57	-1.2
5,139,933	-		GFF5146	0.58	-1.2
5,139,943	+		GFF5146	0.60	-1.1
5,139,943	+		GFF5146	0.60	-0.1
5,139,948	+		GFF5146	0.60	+0.1
5,139,950	+		GFF5146	0.61	-0.7
5,139,955	+		GFF5146	0.61	+1.3
5,139,985	-		GFF5146	0.65	-0.9
5,139,999	+		GFF5146	0.67	+0.2
5,140,015	+		GFF5146	0.69	-2.0
5,140,023	-		GFF5146	0.70	-1.1
5,140,029	-		GFF5146	0.71	-0.7
5,140,048	-		GFF5146	0.74	-0.0
5,140,081	+		GFF5146	0.78	-0.7
5,140,089	-		GFF5146	0.80	-1.1
5,140,117	-		GFF5146	0.83	+0.1
5,140,125	+		GFF5146	0.84	-1.1
5,140,135	-		GFF5146	0.86	-1.0
5,140,135	-		GFF5146	0.86	-0.2
5,140,135	-		GFF5146	0.86	-1.2
5,140,145	+		GFF5146	0.87	-0.6
5,140,145	+		GFF5146	0.87	-0.1
5,140,148	-		GFF5146	0.88	-1.6
5,140,153	-		GFF5146	0.88	-1.2
5,140,153	-		GFF5146	0.88	-0.1
5,140,153	-		GFF5146	0.88	-0.6
5,140,153	-		GFF5146	0.88	-1.1
5,140,178	+				+0.4
5,140,201	-				+0.2
5,140,208	+				-1.4
5,140,232	+				-0.4
5,140,233	+				+1.0
5,140,233	+				-1.8
5,140,233	+				-0.6
5,140,233	+				-2.1
5,140,233	+				+1.3
5,140,241	-				-0.5
5,140,241	-				-0.9
5,140,241	-				-1.6
5,140,242	+				-1.6
5,140,338	-				-1.4
5,140,361	-				-1.4
5,140,361	-				-1.0
5,140,374	-				-2.3
5,140,374	-				-1.1
5,140,374	-				-0.5
5,140,386	-				+0.2
5,140,386	-				-0.7
5,140,395	-				+1.5
5,140,409	+				-0.8
5,140,417	-				-1.0
5,140,445	+				-0.5
5,140,450	+				+0.2
5,140,450	+				-1.2
5,140,450	+				-2.4
5,140,453	-				-0.9
5,140,455	+				-0.0
5,140,455	+				-1.4
5,140,458	-				-0.8
5,140,473	-				+1.3
5,140,501	+				+0.2
5,140,544	+				-0.1
5,140,557	-				-1.6
5,140,567	+				-0.6
5,140,579	-				-0.2
5,140,595	-				-1.9
5,140,602	+				+0.9
5,140,620	-				-1.0
5,140,650	-				+0.8
5,140,650	-				-1.2
5,140,650	-				-0.7
5,140,714	+		GFF5147	0.10	+0.3
5,140,722	-		GFF5147	0.11	+1.1
5,140,722	-		GFF5147	0.11	+0.9
5,140,722	-		GFF5147	0.11	-0.2
5,140,726	+		GFF5147	0.11	-1.4
5,140,730	+		GFF5147	0.12	+0.8
5,140,732	+		GFF5147	0.12	-0.7
5,140,734	-		GFF5147	0.12	+0.4
5,140,734	-		GFF5147	0.12	-2.0
5,140,765	+		GFF5147	0.16	-0.2
5,140,765	+		GFF5147	0.16	-0.4
5,140,768	-		GFF5147	0.16	-0.8
5,140,773	-		GFF5147	0.17	-0.9
5,140,779	-		GFF5147	0.17	-0.8
5,140,867	-		GFF5147	0.27	+0.2
5,140,867	-		GFF5147	0.27	-0.5
5,140,867	-		GFF5147	0.27	-1.9
5,140,919	+		GFF5147	0.33	+0.3
5,140,924	+		GFF5147	0.34	-1.0
5,140,965	-		GFF5147	0.39	+0.3
5,141,022	+		GFF5147	0.45	-0.3
5,141,027	+		GFF5147	0.46	+0.2
5,141,027	+		GFF5147	0.46	-0.9
5,141,027	+		GFF5147	0.46	+1.2
5,141,030	-		GFF5147	0.46	-0.8
5,141,035	-		GFF5147	0.47	-2.2
5,141,035	-		GFF5147	0.47	+1.0
5,141,077	-		GFF5147	0.51	+0.2
5,141,080	-		GFF5147	0.52	-0.8
5,141,118	+		GFF5147	0.56	-1.8
5,141,118	+		GFF5147	0.56	-0.5
5,141,135	+		GFF5147	0.58	-1.1
5,141,189	+		GFF5147	0.64	-0.8
5,141,269	+		GFF5147	0.73	-1.5
5,141,279	+		GFF5147	0.74	-0.1
5,141,279	+		GFF5147	0.74	-1.0
5,141,279	+		GFF5147	0.74	+2.1
5,141,279	+		GFF5147	0.74	-1.3
5,141,279	+		GFF5147	0.74	-0.2
5,141,279	+		GFF5147	0.74	+0.5
5,141,291	+		GFF5147	0.76	-0.6
5,141,348	+		GFF5147	0.82	+0.3
5,141,356	-		GFF5147	0.83	-0.1
5,141,384	+		GFF5147	0.86	-0.9
5,141,384	+		GFF5147	0.86	-0.4
5,141,392	-		GFF5147	0.87	-0.8
5,141,392	-		GFF5147	0.87	-0.6
5,141,402	+		GFF5147	0.88	-0.1
5,141,416	-		GFF5147	0.90	-1.4
5,141,423	-				+0.1
5,141,423	-				+1.1
5,141,450	-				-1.2
5,141,458	+				-0.3
5,141,458	+				+0.3
5,141,464	+				+0.8
5,141,466	-				-1.6
5,141,466	-				-0.0
5,141,471	+				-1.5
5,141,471	+				+1.3
5,141,471	+				+0.1
5,141,476	+				-0.9
5,141,476	+				-0.9
5,141,484	-				-0.5
5,141,495	+				+0.4
5,141,495	+				-1.7
5,141,500	+				+1.4
5,141,503	-				-0.8
5,141,505	+				-0.9
5,141,505	+				+0.8
5,141,508	-				-1.0
5,141,514	+				-0.4
5,141,514	+				-1.2
5,141,522	-				+0.3
5,141,531	+				+0.2
5,141,536	+				-0.9
5,141,539	-				-0.0
5,141,540	-				-0.9
5,141,544	-				-0.5
5,141,544	-				-1.1
5,141,562	-				-1.0
5,141,564	+				+0.3
5,141,564	+				-1.2
5,141,572	-				-0.2
5,141,572	-				-0.9
5,141,572	-				+0.3
5,141,572	-				-0.7
5,141,572	-				+0.0
5,141,607	-				-1.0
5,141,657	+		GFF5148	0.12	+0.6
5,141,671	-		GFF5148	0.14	+1.1
5,141,717	+		GFF5148	0.19	-1.3
5,141,755	+		GFF5148	0.23	-0.9
5,141,758	-		GFF5148	0.23	+1.2
5,141,831	+		GFF5148	0.31	+0.6
5,141,871	+		GFF5148	0.35	-1.4
5,141,871	+		GFF5148	0.35	-0.7
5,141,871	+		GFF5148	0.35	+0.5
5,141,871	+		GFF5148	0.35	-2.0
5,141,871	+		GFF5148	0.35	-1.3
5,141,871	+		GFF5148	0.35	-1.0
5,141,879	-		GFF5148	0.36	-0.6
5,141,879	-		GFF5148	0.36	-1.1
5,141,879	-		GFF5148	0.36	-0.3
5,141,963	-		GFF5148	0.45	+0.0
5,141,968	-		GFF5148	0.45	+0.0
5,141,970	+		GFF5148	0.45	-2.0
5,141,973	-		GFF5148	0.46	-0.9
5,141,991	+		GFF5148	0.48	-1.1
5,142,020	-		GFF5148	0.51	-0.6
5,142,103	-		GFF5148	0.59	+0.0
5,142,103	-		GFF5148	0.59	+0.1
5,142,113	+		GFF5148	0.61	+1.1
5,142,115	+		GFF5148	0.61	-0.0
5,142,149	-		GFF5148	0.64	+0.2
5,142,185	+		GFF5148	0.68	-0.9
5,142,214	+		GFF5148	0.71	-1.5
5,142,214	+		GFF5148	0.71	+0.1
5,142,214	+		GFF5148	0.71	-0.3
5,142,249	-		GFF5148	0.75	-1.4
5,142,268	+		GFF5148	0.77	+0.5
5,142,268	+		GFF5148	0.77	-1.1
5,142,268	+		GFF5148	0.77	-2.7
5,142,268	-		GFF5148	0.77	-1.6
5,142,269	-		GFF5148	0.77	-1.5
5,142,273	+		GFF5148	0.77	-1.2
5,142,276	-		GFF5148	0.78	-2.0
5,142,276	-		GFF5148	0.78	+0.2
5,142,276	-		GFF5148	0.78	-0.8
5,142,277	-		GFF5148	0.78	-0.6
5,142,281	-		GFF5148	0.78	-1.1
5,142,285	-		GFF5148	0.79	+0.8
5,142,296	+		GFF5148	0.80	+0.3
5,142,296	+		GFF5148	0.80	+0.1
5,142,296	+		GFF5148	0.80	-0.7
5,142,296	+		GFF5148	0.80	-0.7
5,142,298	-		GFF5148	0.80	-0.4
5,142,304	-		GFF5148	0.81	-0.0
5,142,304	-		GFF5148	0.81	-2.0
5,142,304	-		GFF5148	0.81	+0.3
5,142,304	-		GFF5148	0.81	+0.1
5,142,308	+		GFF5148	0.81	-1.6
5,142,308	+		GFF5148	0.81	+0.2
5,142,308	+		GFF5148	0.81	-0.6
5,142,313	+		GFF5148	0.82	-1.2
5,142,313	+		GFF5148	0.82	+0.5
5,142,316	-		GFF5148	0.82	-1.2
5,142,321	-		GFF5148	0.82	-0.1
5,142,322	+		GFF5148	0.83	-1.3
5,142,329	-		GFF5148	0.83	-1.0
5,142,329	-		GFF5148	0.83	-1.0
5,142,335	+		GFF5148	0.84	-1.8
5,142,335	+		GFF5148	0.84	-1.1
5,142,335	+		GFF5148	0.84	-0.2
5,142,356	+		GFF5148	0.86	+0.2
5,142,356	+		GFF5148	0.86	-0.1
5,142,356	+		GFF5148	0.86	-0.2
5,142,356	+		GFF5148	0.86	-1.3
5,142,356	+		GFF5148	0.86	-0.8
5,142,356	+		GFF5148	0.86	+0.0
5,142,356	+		GFF5148	0.86	+0.2
5,142,364	-		GFF5148	0.87	+0.4
5,142,364	-		GFF5148	0.87	-0.5
5,142,364	-		GFF5148	0.87	-0.1
5,142,374	-		GFF5148	0.88	-1.8
5,142,374	-		GFF5148	0.88	-0.7
5,142,409	-				-0.3
5,142,427	+				-0.5
5,142,427	+				+0.1
5,142,427	+				-0.4
5,142,427	+				-0.6
5,142,427	+				-0.6
5,142,427	+				-0.9
5,142,435	-				+0.3
5,142,435	-				-1.0
5,142,435	-				-0.8
5,142,435	-				-0.4
5,142,435	-				-0.3
5,142,435	-				-1.1
5,142,435	-				+0.4
5,142,435	-				+0.3
5,142,435	-				-0.3
5,142,437	+				-1.0
5,142,437	+				-1.3
5,142,445	+				-2.5
5,142,459	+				+0.2
5,142,459	+				+0.8