Strain Fitness in Sphingobium sp. HT1-2 around GFF5115

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,103,610	-				-0.6
5,103,615	-				-2.3
5,103,615	-				+0.3
5,103,616	+				-0.9
5,103,624	-				-0.5
5,103,628	+				-0.8
5,103,628	+				-0.5
5,103,631	-				-2.2
5,103,631	-				+0.7
5,103,636	-				+0.9
5,103,636	-				-1.0
5,103,636	-				+0.8
5,103,636	-				+1.0
5,103,636	-				-0.2
5,103,636	-				+1.2
5,103,636	-				-0.6
5,103,636	-				-0.7
5,103,677	+				-2.3
5,103,692	+				-1.1
5,103,692	+				-0.9
5,103,695	-				+1.0
5,103,695	-				+0.1
5,103,700	+				+0.8
5,103,700	+				+1.2
5,103,700	-				-1.5
5,103,700	-				-1.2
5,103,715	+		GFF5114	0.12	-2.5
5,103,719	+		GFF5114	0.13	-0.8
5,103,719	+		GFF5114	0.13	-0.9
5,103,719	+		GFF5114	0.13	-0.8
5,103,719	+		GFF5114	0.13	-0.8
5,103,727	-		GFF5114	0.14	+0.7
5,103,727	-		GFF5114	0.14	+0.2
5,103,727	-		GFF5114	0.14	-0.3
5,103,727	-		GFF5114	0.14	-0.8
5,103,727	-		GFF5114	0.14	-1.0
5,103,735	-		GFF5114	0.16	-0.4
5,103,735	-		GFF5114	0.16	-1.0
5,103,737	+		GFF5114	0.16	-1.2
5,103,740	-		GFF5114	0.17	+0.8
5,103,761	+		GFF5114	0.20	+0.7
5,103,761	+		GFF5114	0.20	-1.1
5,103,769	-		GFF5114	0.22	+0.1
5,103,769	-		GFF5114	0.22	-0.1
5,103,769	-		GFF5114	0.22	+0.1
5,103,769	-		GFF5114	0.22	-0.8
5,103,784	+		GFF5114	0.25	-1.2
5,103,793	+		GFF5114	0.26	-0.9
5,103,795	-		GFF5114	0.26	+0.5
5,103,796	-		GFF5114	0.27	+0.2
5,103,801	-		GFF5114	0.28	-1.7
5,103,806	+		GFF5114	0.28	-0.1
5,103,852	+		GFF5114	0.37	-2.8
5,103,852	+		GFF5114	0.37	-1.9
5,103,866	-		GFF5114	0.39	+0.9
5,103,867	+		GFF5114	0.39	+0.6
5,103,867	+		GFF5114	0.39	-0.6
5,103,867	+		GFF5114	0.39	-0.6
5,103,867	+		GFF5114	0.39	+1.2
5,103,875	-		GFF5114	0.41	-0.1
5,103,875	-		GFF5114	0.41	-0.8
5,103,875	-		GFF5114	0.41	+1.0
5,103,889	+		GFF5114	0.43	+0.9
5,103,896	+		GFF5114	0.45	+0.5
5,103,921	-		GFF5114	0.49	-1.0
5,103,931	-		GFF5114	0.51	-0.6
5,103,933	-		GFF5114	0.51	-0.2
5,103,947	+		GFF5114	0.54	+0.1
5,103,953	-		GFF5114	0.55	+1.4
5,103,957	+		GFF5114	0.56	+0.1
5,103,962	+		GFF5114	0.57	+1.2
5,103,962	+		GFF5114	0.57	-1.0
5,103,965	-		GFF5114	0.57	+0.3
5,103,965	-		GFF5114	0.57	-2.1
5,103,965	-		GFF5114	0.57	-1.0
5,103,970	-		GFF5114	0.58	+1.1
5,103,970	-		GFF5114	0.58	+0.9
5,103,970	-		GFF5114	0.58	-0.8
5,103,981	+		GFF5114	0.60	-1.0
5,104,002	+		GFF5114	0.64	-1.7
5,104,002	+		GFF5114	0.64	-0.8
5,104,002	+		GFF5114	0.64	-1.7
5,104,004	+		GFF5114	0.64	-1.6
5,104,005	-		GFF5114	0.64	-1.5
5,104,010	-		GFF5114	0.65	+0.3
5,104,010	-		GFF5114	0.65	+0.1
5,104,010	-		GFF5114	0.65	+1.3
5,104,014	+		GFF5114	0.66	+1.3
5,104,037	-		GFF5114	0.70	-2.5
5,104,059	-		GFF5114	0.74	-2.2
5,104,104	+		GFF5114	0.82	-2.0
5,104,105	-		GFF5114	0.82	-1.3
5,104,137	+		GFF5114	0.88	+0.0
5,104,140	-		GFF5114	0.89	-1.3
5,104,140	-		GFF5114	0.89	+0.6
5,104,140	-		GFF5114	0.89	-1.5
5,104,143	+		GFF5114	0.89	-0.6
5,104,153	+				+1.0
5,104,163	+				-1.7
5,104,163	+				+0.8
5,104,163	+				+0.0
5,104,163	+				+0.1
5,104,171	-				-1.1
5,104,181	-				-2.1
5,104,212	-				+0.3
5,104,252	+				-0.2
5,104,252	+				-0.6
5,104,258	+				-1.5
5,104,258	+				-1.5
5,104,313	-				-0.6
5,104,319	+				-0.8
5,104,326	+				-1.6
5,104,334	-				-0.2
5,104,334	-				-1.2
5,104,352	+				+0.2
5,104,352	+				+1.2
5,104,360	-				-1.1
5,104,418	+				+0.7
5,104,466	+				+0.8
5,104,499	-				+1.2
5,104,504	-				-0.1
5,104,507	+				-0.5
5,104,508	-				+0.0
5,104,509	-				-0.8
5,104,515	-				-0.1
5,104,515	-				-1.0
5,104,526	-				+0.8
5,104,551	-				-1.5
5,104,562	-				-1.1
5,104,580	+				-0.1
5,104,607	-				-0.2
5,104,607	-				-0.1
5,104,607	-				-0.2
5,104,607	-				+0.4
5,104,607	-				-0.7
5,104,607	-				+0.7
5,104,607	-				+0.6
5,104,607	-				-1.7
5,104,607	-				+0.7
5,104,607	-				-0.2
5,104,607	-				-0.8
5,104,607	-				-1.3
5,104,607	-				-0.2
5,104,607	-				-0.7
5,104,607	-				-0.9
5,104,607	-				-0.2
5,104,607	-				-0.9
5,104,607	-				-1.7
5,104,607	-				-1.2
5,104,607	-				+0.6
5,104,607	-				+0.2
5,104,607	-				-1.1
5,104,607	-				-1.4
5,104,607	-				-0.8
5,104,607	-				-0.0
5,104,857	+		GFF5115	0.72	-0.8
5,104,869	+		GFF5115	0.76	-1.9
5,104,869	+		GFF5115	0.76	+0.1
5,104,869	+		GFF5115	0.76	-1.4
5,104,869	+		GFF5115	0.76	-2.2
5,104,869	+		GFF5115	0.76	-1.1
5,104,876	+		GFF5115	0.78	-1.1
5,104,881	+		GFF5115	0.79	-2.1
5,104,884	-		GFF5115	0.80	-1.1
5,104,901	-		GFF5115	0.85	-0.4
5,104,902	+		GFF5115	0.85	+0.4
5,104,902	+		GFF5115	0.85	-2.2
5,104,902	+		GFF5115	0.85	+0.5
5,104,907	+		GFF5115	0.87	-2.0
5,104,907	+		GFF5115	0.87	-1.0
5,104,907	+		GFF5115	0.87	-1.7
5,104,907	+		GFF5115	0.87	-0.1
5,104,907	+		GFF5115	0.87	-1.0
5,104,908	+		GFF5115	0.87	-0.8
5,104,910	-		GFF5115	0.88	+0.8
5,104,910	-		GFF5115	0.88	+0.3
5,104,910	-		GFF5115	0.88	-2.5
5,104,910	-		GFF5115	0.88	-0.8
5,104,910	-		GFF5115	0.88	-1.1
5,104,915	+		GFF5115	0.89	-1.5
5,104,915	+		GFF5115	0.89	-1.0
5,104,915	-		GFF5115	0.89	-1.3
5,104,915	-		GFF5115	0.89	-0.9
5,104,915	-		GFF5115	0.89	-0.2
5,104,915	-		GFF5115	0.89	-1.4
5,104,915	-		GFF5115	0.89	-2.4
5,104,917	+		GFF5115	0.90	-1.3
5,104,929	+				-0.6
5,104,929	+				-1.3
5,104,929	+				-1.2
5,104,929	+				-1.7
5,104,929	+				+0.0
5,104,937	-				-0.8
5,104,937	-				+0.5
5,104,937	-				-1.4
5,104,937	-				-1.8
5,104,937	-				-0.6
5,104,937	-				-2.2
5,104,937	-				+0.4
5,104,937	-				-1.5
5,104,937	-				-1.5
5,104,939	+				-0.8
5,104,939	+				-2.2
5,104,939	+				-1.3
5,104,939	+				+0.4
5,104,940	+				-1.1
5,104,942	-				-1.5
5,104,947	-				-0.4
5,104,947	-				-0.6
5,104,947	-				+0.5
5,104,947	-				-0.6
5,104,947	-				-2.4
5,104,947	-				-1.6
5,104,948	+				+0.4
5,104,949	+				-1.3
5,104,956	-				-0.0
5,104,960	+				+0.2
5,104,965	+				-0.4
5,104,968	-				-1.6
5,104,968	-				+0.4
5,104,973	-				-1.0
5,104,973	-				-1.1
5,104,974	+				-1.0
5,104,976	+				-2.4
5,104,984	+				-0.7
5,104,984	+				-2.2
5,104,984	+				-0.2
5,104,984	+				-1.0
5,104,984	+				-1.1
5,104,984	+				-1.5
5,104,984	+				-0.5
5,104,984	+				+1.1
5,104,984	+				+0.4
5,104,984	+				-1.4
5,104,984	+				-1.5
5,104,984	+				-1.6
5,104,984	+				-1.1
5,104,984	+				-0.8
5,104,984	+				-1.5
5,104,984	+				-1.8
5,104,984	+				-0.9
5,104,984	+				-0.3
5,104,984	+				-0.9
5,104,984	+				-1.8
5,104,984	+				-0.1
5,104,984	+				-0.9
5,104,984	+				+0.4
5,104,984	+				-1.6
5,104,984	+				+0.2
5,104,984	+				-1.1
5,104,984	+				-0.8
5,104,984	+				-1.1
5,104,984	+				-1.4
5,104,984	+				-0.6
5,104,992	-				+0.2
5,104,992	-				-1.8
5,104,992	-				-0.9
5,104,992	-				+0.2
5,104,992	-				+1.1
5,104,992	-				+0.1
5,104,992	-				+1.3
5,104,992	-				-1.6
5,104,992	-				-1.2
5,104,992	-				-2.8
5,104,992	-				-0.1
5,104,992	-				-1.7
5,104,992	-				-0.0
5,104,992	-				-0.8
5,104,992	-				+0.7
5,104,992	-				-0.5
5,104,992	-				+0.1
5,104,992	-				-0.3
5,104,992	-				-1.9
5,104,992	-				+0.2
5,104,992	-				-0.1
5,104,992	-				-0.2
5,104,992	-				+0.6
5,104,992	-				-0.6
5,104,992	-				-0.8
5,104,992	-				-0.2
5,104,992	-				+0.1
5,104,992	-				-1.2
5,104,992	-				-1.4
5,104,992	-				+0.1
5,104,994	-				-1.2
5,105,008	+				-0.7
5,105,008	+				-1.6
5,105,008	+				-0.1
5,105,008	+				-1.3
5,105,008	+				-1.4
5,105,008	+				-0.8
5,105,008	+				-0.3
5,105,008	+				+0.5
5,105,008	+				+0.8
5,105,008	+				+0.2
5,105,016	-				-1.4
5,105,016	-				-1.0
5,105,016	-				-1.3
5,105,016	-				-1.7
5,105,016	-				-1.9
5,105,016	-				+1.1
5,105,016	-				+0.3
5,105,016	-				-0.2
5,105,016	-				-0.8
5,105,016	-				-0.2
5,105,026	+				-0.1
5,105,034	-				-0.3
5,105,034	-				+0.7
5,105,053	+		GFF5116	0.14	-1.5
5,105,053	+		GFF5116	0.14	-1.0
5,105,053	+		GFF5116	0.14	-0.2
5,105,053	+		GFF5116	0.14	-1.3
5,105,061	-		GFF5116	0.17	-0.8
5,105,061	-		GFF5116	0.17	-0.5
5,105,061	-		GFF5116	0.17	+1.2
5,105,061	-		GFF5116	0.17	+0.1
5,105,063	+		GFF5116	0.17	-1.8
5,105,068	+		GFF5116	0.18	-2.2
5,105,071	-		GFF5116	0.19	-0.8
5,105,073	+		GFF5116	0.20	-1.0
5,105,073	+		GFF5116	0.20	-1.7
5,105,073	+		GFF5116	0.20	-1.1
5,105,073	+		GFF5116	0.20	+0.9
5,105,073	+		GFF5116	0.20	-0.6
5,105,073	+		GFF5116	0.20	-0.5
5,105,073	+		GFF5116	0.20	+0.2
5,105,073	+		GFF5116	0.20	+0.1
5,105,073	+		GFF5116	0.20	-0.6
5,105,073	+		GFF5116	0.20	-0.9
5,105,073	+		GFF5116	0.20	-1.0
5,105,073	+		GFF5116	0.20	+1.1
5,105,073	+		GFF5116	0.20	-1.2
5,105,074	-		GFF5116	0.20	-1.9
5,105,081	-		GFF5116	0.22	-1.6
5,105,081	-		GFF5116	0.22	-2.3
5,105,081	-		GFF5116	0.22	-1.2
5,105,081	-		GFF5116	0.22	-2.0
5,105,081	-		GFF5116	0.22	-1.4
5,105,081	-		GFF5116	0.22	+0.8
5,105,081	-		GFF5116	0.22	-0.9
5,105,089	+		GFF5116	0.24	-0.4
5,105,094	+		GFF5116	0.25	-2.0
5,105,094	+		GFF5116	0.25	-0.1
5,105,109	+		GFF5116	0.30	-1.1
5,105,109	+		GFF5116	0.30	+0.4
5,105,112	-		GFF5116	0.30	+0.0
5,105,117	-		GFF5116	0.32	-1.0
5,105,124	+		GFF5116	0.34	-0.9
5,105,136	+		GFF5116	0.37	-0.9
5,105,141	-		GFF5116	0.38	-1.7
5,105,144	-		GFF5116	0.39	-1.4
5,105,144	-		GFF5116	0.39	-0.6
5,105,147	+		GFF5116	0.40	-0.6
5,105,147	+		GFF5116	0.40	-1.6
5,105,155	+		GFF5116	0.42	-2.2
5,105,181	+		GFF5116	0.49	-0.6
5,105,182	-		GFF5116	0.49	+0.7
5,105,182	-		GFF5116	0.49	-0.1
5,105,183	+		GFF5116	0.50	-0.9
5,105,183	+		GFF5116	0.50	-0.8
5,105,183	+		GFF5116	0.50	+0.3
5,105,183	+		GFF5116	0.50	+0.6
5,105,183	+		GFF5116	0.50	-1.3
5,105,183	+		GFF5116	0.50	-0.5
5,105,191	-		GFF5116	0.52	-0.4
5,105,191	-		GFF5116	0.52	-0.5
5,105,191	-		GFF5116	0.52	+0.3
5,105,201	-		GFF5116	0.54	-1.0
5,105,203	+		GFF5116	0.55	-0.7
5,105,221	+		GFF5116	0.60	-0.5
5,105,229	-		GFF5116	0.62	-2.0
5,105,230	+		GFF5116	0.62	+0.6
5,105,230	+		GFF5116	0.62	+0.8
5,105,231	+		GFF5116	0.63	-1.2
5,105,231	+		GFF5116	0.63	-1.4
5,105,238	-		GFF5116	0.64	-0.1
5,105,239	-		GFF5116	0.65	+0.5
5,105,244	-		GFF5116	0.66	-0.0
5,105,277	-		GFF5116	0.75	+0.6
5,105,403	-				-2.2
5,105,432	+				-1.6
5,105,432	+				-0.9
5,105,439	+				-1.0
5,105,445	-				+0.6
5,105,478	+				-0.6
5,105,479	-				-0.7
5,105,479	-				+0.7
5,105,501	-				-0.8
5,105,504	+				+0.5
5,105,509	+				-2.0
5,105,532	-				-0.9
5,105,535	+				-2.3
5,105,537	-				-0.0
5,105,537	-				+0.9
5,105,543	-				+0.4
5,105,545	+				-0.6
5,105,573	-				-0.9
5,105,586	+				+0.9
5,105,586	+				-1.9
5,105,586	+				-1.7
5,105,586	+				-1.1
5,105,586	+				-1.5
5,105,591	+				-0.4
5,105,594	-				+0.1
5,105,594	-				-0.4
5,105,594	-				-0.9
5,105,594	-				-0.8
5,105,594	-				-1.1
5,105,635	+				-0.1
5,105,656	-				+0.3
5,105,661	+				+1.3
5,105,668	+				-1.8
5,105,689	+				-0.1
5,105,691	-				-0.9
5,105,713	+				+0.3
5,105,713	-				-0.4
5,105,722	+				-1.6
5,105,753	-				-1.1
5,105,767	+				+0.9
5,105,788	+				+0.4
5,105,791	-				+0.4
5,105,792	+				-1.0
5,105,838	+		GFF5117	0.10	-2.1
5,105,877	+		GFF5117	0.13	+0.1
5,105,903	-		GFF5117	0.14	-1.7
5,105,903	-		GFF5117	0.14	-1.8
5,105,935	+		GFF5117	0.16	-0.1
5,105,947	+		GFF5117	0.17	+0.4
5,105,947	+		GFF5117	0.17	-1.6
5,105,948	+		GFF5117	0.17	-0.1
5,105,948	+		GFF5117	0.17	-2.0