Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4767 and GFF4768 are separated by 44 nucleotides GFF4768 and GFF4769 overlap by 1 nucleotides GFF4769 and GFF4770 overlap by 4 nucleotides
GFF4767 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 4,763,563 to 4,764,393
GFF4767
GFF4768 - Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1, at 4,764,438 to 4,765,013
GFF4768
GFF4769 - putative cox locus protein, at 4,765,013 to 4,765,150
GFF4769
GFF4770 - Heme O synthase, protoheme IX farnesyltransferase, COX10-CtaB, at 4,765,147 to 4,766,097
GFF4770
Position (kb) 4765
4766 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4764.023 kb on - strand, within GFF4767 at 4764.080 kb on + strand, within GFF4767 at 4764.103 kb on + strand, within GFF4767 at 4764.108 kb on - strand, within GFF4767 at 4764.126 kb on + strand, within GFF4767 at 4764.135 kb on - strand, within GFF4767 at 4764.139 kb on + strand, within GFF4767 at 4764.139 kb on + strand, within GFF4767 at 4764.149 kb on + strand, within GFF4767 at 4764.216 kb on - strand, within GFF4767 at 4764.220 kb on + strand, within GFF4767 at 4764.250 kb on + strand, within GFF4767 at 4764.258 kb on - strand, within GFF4767 at 4764.258 kb on - strand, within GFF4767 at 4764.308 kb on + strand, within GFF4767 at 4764.332 kb on - strand at 4764.369 kb on - strand at 4764.398 kb on - strand at 4764.458 kb on + strand at 4764.474 kb on - strand at 4764.475 kb on + strand at 4764.483 kb on - strand at 4764.485 kb on + strand at 4764.485 kb on + strand at 4764.519 kb on + strand, within GFF4768 at 4764.535 kb on - strand, within GFF4768 at 4764.546 kb on - strand, within GFF4768 at 4764.546 kb on - strand, within GFF4768 at 4764.566 kb on - strand, within GFF4768 at 4764.604 kb on + strand, within GFF4768 at 4764.612 kb on - strand, within GFF4768 at 4764.633 kb on - strand, within GFF4768 at 4764.694 kb on - strand, within GFF4768 at 4764.746 kb on + strand, within GFF4768 at 4764.751 kb on + strand, within GFF4768 at 4764.751 kb on + strand, within GFF4768 at 4764.759 kb on - strand, within GFF4768 at 4764.769 kb on - strand, within GFF4768 at 4764.774 kb on + strand, within GFF4768 at 4764.774 kb on + strand, within GFF4768 at 4764.798 kb on + strand, within GFF4768 at 4764.838 kb on - strand, within GFF4768 at 4764.854 kb on + strand, within GFF4768 at 4764.895 kb on - strand, within GFF4768 at 4764.897 kb on + strand, within GFF4768 at 4765.097 kb on - strand, within GFF4769 at 4765.130 kb on + strand, within GFF4769 at 4765.138 kb on - strand at 4765.181 kb on - strand at 4766.091 kb on + strand at 4766.141 kb on - strand at 4766.141 kb on - strand at 4766.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 4,764,023 - GFF4767 0.55 -0.1 4,764,080 + GFF4767 0.62 -1.3 4,764,103 + GFF4767 0.65 -0.8 4,764,108 - GFF4767 0.66 -0.2 4,764,126 + GFF4767 0.68 -0.5 4,764,135 - GFF4767 0.69 -0.9 4,764,139 + GFF4767 0.69 -1.3 4,764,139 + GFF4767 0.69 +1.0 4,764,149 + GFF4767 0.71 -1.8 4,764,216 - GFF4767 0.79 +1.5 4,764,220 + GFF4767 0.79 -1.1 4,764,250 + GFF4767 0.83 -1.4 4,764,258 - GFF4767 0.84 +1.3 4,764,258 - GFF4767 0.84 -1.3 4,764,308 + GFF4767 0.90 +0.9 4,764,332 - +2.1 4,764,369 - -0.1 4,764,398 - +0.9 4,764,458 + -1.8 4,764,474 - +0.5 4,764,475 + +0.7 4,764,483 - -0.6 4,764,485 + -1.7 4,764,485 + +1.3 4,764,519 + GFF4768 0.14 -1.3 4,764,535 - GFF4768 0.17 +0.4 4,764,546 - GFF4768 0.19 -2.2 4,764,546 - GFF4768 0.19 -1.8 4,764,566 - GFF4768 0.22 -0.2 4,764,604 + GFF4768 0.29 +1.3 4,764,612 - GFF4768 0.30 -1.2 4,764,633 - GFF4768 0.34 -0.1 4,764,694 - GFF4768 0.44 +2.1 4,764,746 + GFF4768 0.53 -0.2 4,764,751 + GFF4768 0.54 -0.4 4,764,751 + GFF4768 0.54 +0.9 4,764,759 - GFF4768 0.56 +0.5 4,764,769 - GFF4768 0.57 -0.5 4,764,774 + GFF4768 0.58 -1.1 4,764,774 + GFF4768 0.58 -0.9 4,764,798 + GFF4768 0.62 -1.1 4,764,838 - GFF4768 0.69 -0.5 4,764,854 + GFF4768 0.72 +0.2 4,764,895 - GFF4768 0.79 -0.9 4,764,897 + GFF4768 0.80 +0.6 4,765,097 - GFF4769 0.61 -0.4 4,765,130 + GFF4769 0.85 -1.4 4,765,138 - -0.7 4,765,181 - -0.8 4,766,091 + -1.4 4,766,141 - +0.0 4,766,141 - +0.5 4,766,149 - -0.7
Or see this region's nucleotide sequence