Strain Fitness in Sphingobium sp. HT1-2 around GFF4671

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,666,118	+		GFF4668	0.53	+0.3
4,666,143	-		GFF4668	0.61	+0.2
4,666,200	+		GFF4668	0.79	-1.1
4,666,216	-		GFF4668	0.84	-0.7
4,666,219	-		GFF4668	0.85	+0.3
4,666,241	+				+0.3
4,666,242	-				+0.5
4,666,251	+				-0.5
4,666,318	+				-1.2
4,666,331	-				-1.0
4,666,331	-				-1.1
4,666,331	-				+0.7
4,666,335	+				-1.5
4,666,342	+				-0.7
4,666,345	+				+0.7
4,666,419	-		GFF4669	0.14	+0.4
4,666,419	-		GFF4669	0.14	+0.5
4,666,419	-		GFF4669	0.14	-0.8
4,666,419	-		GFF4669	0.14	-1.2
4,666,424	-		GFF4669	0.16	-0.7
4,666,431	-		GFF4669	0.19	-1.0
4,666,455	+		GFF4669	0.29	-0.1
4,666,462	-		GFF4669	0.31	-1.0
4,666,475	+		GFF4669	0.37	-1.4
4,666,475	+		GFF4669	0.37	+0.0
4,666,475	+		GFF4669	0.37	-0.5
4,666,554	+		GFF4669	0.68	-0.2
4,666,554	+		GFF4669	0.68	+0.8
4,666,554	+		GFF4669	0.68	+0.4
4,666,562	-		GFF4669	0.71	-0.8
4,666,562	-		GFF4669	0.71	-0.7
4,666,562	-		GFF4669	0.71	+0.4
4,666,562	-		GFF4669	0.71	-0.6
4,666,562	-		GFF4669	0.71	+0.9
4,666,574	+		GFF4669	0.76	+1.1
4,666,623	+				-0.2
4,666,655	-				-0.5
4,666,685	-				+1.1
4,666,724	-				+0.5
4,666,757	+		GFF4670	0.26	-0.5
4,666,787	-		GFF4670	0.41	+0.3
4,666,787	-		GFF4670	0.41	+0.2
4,666,789	+		GFF4670	0.42	-1.8
4,666,793	+		GFF4670	0.44	+1.1
4,666,793	+		GFF4670	0.44	-0.6
4,666,801	-		GFF4670	0.48	+0.2
4,666,801	-		GFF4670	0.48	-0.3
4,666,812	+		GFF4670	0.53	-0.5
4,666,852	+		GFF4670	0.73	+0.2
4,666,852	+		GFF4670	0.73	-0.9
4,666,852	+		GFF4670	0.73	+0.4
4,666,852	+		GFF4670	0.73	-0.9
4,666,852	+		GFF4670	0.73	-1.3
4,666,852	+		GFF4670	0.73	-1.9
4,666,852	+		GFF4670	0.73	+1.7
4,666,852	+		GFF4670	0.73	+0.1
4,666,852	+		GFF4670	0.73	+1.2
4,666,857	+		GFF4670	0.75	+1.3
4,666,858	+		GFF4670	0.75	-0.2
4,666,858	+		GFF4670	0.75	+0.6
4,666,858	+		GFF4670	0.75	+0.1
4,666,860	-		GFF4670	0.76	-0.7
4,666,860	-		GFF4670	0.76	+0.5
4,666,860	-		GFF4670	0.76	+0.9
4,666,860	-		GFF4670	0.76	-0.7
4,666,860	-		GFF4670	0.76	-1.0
4,666,860	-		GFF4670	0.76	-0.2
4,666,860	-		GFF4670	0.76	-0.9
4,666,860	-		GFF4670	0.76	-1.4
4,666,860	-		GFF4670	0.76	-1.4
4,666,860	-		GFF4670	0.76	-1.5
4,666,873	-		GFF4670	0.83	-0.8
4,666,876	+		GFF4670	0.84	+0.4
4,666,923	-				+1.0
4,666,925	+				-0.0
4,666,925	+				+1.4
4,666,925	+				-1.9
4,666,933	-				+0.2
4,666,933	-				-0.5
4,666,933	-				-0.7
4,666,946	-				-0.5
4,666,949	+				-0.6
4,666,949	+				+1.0
4,666,951	+				+0.5
4,666,965	+				-2.1
4,666,978	+				+0.0
4,666,983	-				+0.5
4,666,985	+				-0.2
4,666,986	-				-0.8
4,667,000	-				-1.1
4,667,102	-				-0.5
4,667,252	-		GFF4671	0.19	-2.4
4,667,252	-		GFF4671	0.19	+0.3
4,667,252	-		GFF4671	0.19	+0.8
4,667,252	-		GFF4671	0.19	+0.7
4,667,252	-		GFF4671	0.19	+0.5
4,667,252	-		GFF4671	0.19	-0.8
4,667,252	-		GFF4671	0.19	-1.8
4,667,292	+		GFF4671	0.24	-0.2
4,667,292	+		GFF4671	0.24	+1.2
4,667,292	+		GFF4671	0.24	-2.4
4,667,298	+		GFF4671	0.25	-0.8
4,667,300	-		GFF4671	0.26	-1.1
4,667,300	-		GFF4671	0.26	-1.7
4,667,306	-		GFF4671	0.26	-1.9
4,667,319	+		GFF4671	0.28	+0.0
4,667,327	-		GFF4671	0.29	-0.1
4,667,341	+		GFF4671	0.31	-0.1
4,667,341	+		GFF4671	0.31	+1.1
4,667,341	-		GFF4671	0.31	-1.0
4,667,343	+		GFF4671	0.31	+0.6
4,667,343	+		GFF4671	0.31	-1.0
4,667,350	-		GFF4671	0.32	+0.9
4,667,351	-		GFF4671	0.33	-0.8
4,667,351	-		GFF4671	0.33	-0.6
4,667,355	-		GFF4671	0.33	-0.7
4,667,379	-		GFF4671	0.36	+0.1
4,667,379	-		GFF4671	0.36	-0.5
4,667,384	-		GFF4671	0.37	+0.6
4,667,384	-		GFF4671	0.37	-1.1
4,667,401	-		GFF4671	0.39	-1.1
4,667,402	+		GFF4671	0.39	-1.2
4,667,444	-		GFF4671	0.45	+0.7
4,667,444	-		GFF4671	0.45	-0.6
4,667,463	-		GFF4671	0.48	-0.1
4,667,472	+		GFF4671	0.49	-0.8
4,667,559	+		GFF4671	0.61	-0.5
4,667,582	+		GFF4671	0.64	+1.6
4,667,582	+		GFF4671	0.64	-1.0
4,667,590	-		GFF4671	0.65	-0.2
4,667,590	-		GFF4671	0.65	-0.0
4,667,590	-		GFF4671	0.65	-0.7
4,667,593	+		GFF4671	0.65	-1.5
4,667,642	-		GFF4671	0.72	-0.3
4,667,670	-		GFF4671	0.76	-0.5
4,667,710	+		GFF4671	0.81	-0.0
4,667,722	+		GFF4671	0.83	-1.0
4,667,742	+		GFF4671	0.86	-0.2
4,667,750	-		GFF4671	0.87	+0.1
4,667,750	-		GFF4671	0.87	-1.6
4,667,750	-		GFF4671	0.87	-0.5
4,667,750	-		GFF4671	0.87	-1.0
4,667,750	-		GFF4671	0.87	+0.6
4,667,758	-		GFF4671	0.88	-1.3
4,667,758	-		GFF4671	0.88	+0.6
4,667,765	-		GFF4671	0.89	+0.5
4,667,801	+				+0.4
4,667,802	+				-1.0
4,667,809	-				+0.1
4,667,809	-				+1.6
4,667,809	-				-1.6
4,667,839	-				+1.4
4,667,845	+				-0.4
4,667,845	+				-0.9
4,667,853	-				-1.3
4,667,853	-				+0.3
4,667,855	-				+0.2
4,667,863	-				+0.6
4,667,886	+				-0.3
4,667,886	+				+1.1
4,667,886	+				-0.9
4,667,886	+				-0.7
4,667,886	+				+1.1
4,667,894	-				+1.3
4,667,896	-				+1.1
4,667,905	+				-0.8
4,667,915	-				+0.4
4,667,966	+				+0.9
4,667,971	+				-0.5
4,667,987	+				+0.2
4,668,055	+				-0.5
4,668,119	+				-2.1
4,668,119	+				+0.3
4,668,121	+				-1.3
4,668,121	+				-0.9
4,668,129	-				+0.1
4,668,139	-				+0.7
4,668,148	+				+0.7
4,668,148	+				-0.8
4,668,148	+				+1.5
4,668,148	+				-1.1
4,668,151	-				-0.4
4,668,151	-				+1.8
4,668,156	-				-1.2
4,668,156	-				+1.2
4,668,156	-				+0.8
4,668,156	-				-0.8
4,668,156	-				-0.8
4,668,156	-				-0.5
4,668,182	+				+0.3
4,668,189	+		GFF4672	0.10	+0.1
4,668,191	-		GFF4672	0.10	+0.9
4,668,197	-		GFF4672	0.11	+1.1
4,668,198	+		GFF4672	0.11	-1.1
4,668,218	-		GFF4672	0.14	+0.2
4,668,218	-		GFF4672	0.14	-1.4
4,668,237	-		GFF4672	0.16	-0.6
4,668,262	+		GFF4672	0.19	-0.2
4,668,277	+		GFF4672	0.21	+0.6
4,668,287	+		GFF4672	0.22	-0.6
4,668,327	-		GFF4672	0.26	+1.0
4,668,327	-		GFF4672	0.26	-0.6
4,668,329	+		GFF4672	0.27	-0.7
4,668,332	-		GFF4672	0.27	+0.3
4,668,332	-		GFF4672	0.27	+0.4
4,668,335	+		GFF4672	0.27	+0.1
4,668,335	+		GFF4672	0.27	-0.7
4,668,343	-		GFF4672	0.28	-0.7
4,668,359	+		GFF4672	0.30	+0.3
4,668,361	+		GFF4672	0.30	+0.4
4,668,362	-		GFF4672	0.30	-2.5
4,668,372	+		GFF4672	0.32	-0.7
4,668,372	+		GFF4672	0.32	-0.7
4,668,372	+		GFF4672	0.32	-0.4
4,668,402	-		GFF4672	0.35	-0.0
4,668,404	+		GFF4672	0.35	-0.5
4,668,412	-		GFF4672	0.36	+1.5
4,668,412	-		GFF4672	0.36	+1.0
4,668,412	-		GFF4672	0.36	-0.7
4,668,423	+		GFF4672	0.38	+0.2
4,668,434	+		GFF4672	0.39	-0.8
4,668,434	+		GFF4672	0.39	-1.0
4,668,434	+		GFF4672	0.39	+0.6
4,668,434	+		GFF4672	0.39	+1.3
4,668,434	+		GFF4672	0.39	+0.4
4,668,434	+		GFF4672	0.39	-1.2
4,668,434	+		GFF4672	0.39	+0.2
4,668,434	+		GFF4672	0.39	+0.5
4,668,434	+		GFF4672	0.39	-1.0
4,668,434	+		GFF4672	0.39	+0.4
4,668,434	+		GFF4672	0.39	-0.2
4,668,434	+		GFF4672	0.39	-0.4
4,668,434	+		GFF4672	0.39	-0.3
4,668,434	+		GFF4672	0.39	-0.3
4,668,434	+		GFF4672	0.39	+0.8
4,668,434	+		GFF4672	0.39	+0.1
4,668,434	+		GFF4672	0.39	-0.8
4,668,434	+		GFF4672	0.39	-0.7
4,668,434	+		GFF4672	0.39	+1.8
4,668,434	+		GFF4672	0.39	-1.4
4,668,434	+		GFF4672	0.39	-1.7
4,668,434	+		GFF4672	0.39	-0.5
4,668,434	+		GFF4672	0.39	-2.0
4,668,434	+		GFF4672	0.39	-0.9
4,668,434	+		GFF4672	0.39	-0.6
4,668,434	+		GFF4672	0.39	-0.0
4,668,434	+		GFF4672	0.39	-0.7
4,668,434	+		GFF4672	0.39	+0.6
4,668,434	+		GFF4672	0.39	+0.5
4,668,434	+		GFF4672	0.39	+0.4
4,668,434	+		GFF4672	0.39	+0.4
4,668,434	+		GFF4672	0.39	-1.5
4,668,434	+		GFF4672	0.39	-0.6
4,668,434	+		GFF4672	0.39	+0.8
4,668,434	+		GFF4672	0.39	-0.9
4,668,434	+		GFF4672	0.39	+0.8
4,668,434	+		GFF4672	0.39	-1.5
4,668,434	+		GFF4672	0.39	+0.2
4,668,434	+		GFF4672	0.39	-0.6
4,668,434	+		GFF4672	0.39	-0.9
4,668,434	+		GFF4672	0.39	+0.3
4,668,434	+		GFF4672	0.39	+0.1
4,668,434	+		GFF4672	0.39	-1.3
4,668,434	+		GFF4672	0.39	+0.0
4,668,434	+		GFF4672	0.39	+0.5
4,668,434	+		GFF4672	0.39	-2.0
4,668,434	+		GFF4672	0.39	+0.2
4,668,434	+		GFF4672	0.39	-0.6
4,668,434	+		GFF4672	0.39	-1.0
4,668,434	+		GFF4672	0.39	-0.7
4,668,434	+		GFF4672	0.39	-0.4
4,668,434	+		GFF4672	0.39	+0.7
4,668,434	+		GFF4672	0.39	-0.2
4,668,434	+		GFF4672	0.39	-0.9
4,668,434	+		GFF4672	0.39	-0.5
4,668,434	+		GFF4672	0.39	-1.5
4,668,434	+		GFF4672	0.39	-1.8
4,668,442	-		GFF4672	0.40	-0.3
4,668,442	-		GFF4672	0.40	-0.5
4,668,442	-		GFF4672	0.40	+0.9
4,668,442	-		GFF4672	0.40	+0.5
4,668,442	-		GFF4672	0.40	+0.0
4,668,442	-		GFF4672	0.40	+1.4
4,668,442	-		GFF4672	0.40	+1.9
4,668,442	-		GFF4672	0.40	-0.7
4,668,442	-		GFF4672	0.40	+0.3
4,668,442	-		GFF4672	0.40	-1.8
4,668,442	-		GFF4672	0.40	-1.1
4,668,442	-		GFF4672	0.40	-0.6
4,668,442	-		GFF4672	0.40	+1.1
4,668,442	-		GFF4672	0.40	-0.7
4,668,442	-		GFF4672	0.40	-0.9
4,668,442	-		GFF4672	0.40	-0.5
4,668,442	-		GFF4672	0.40	+0.5
4,668,442	-		GFF4672	0.40	+1.1
4,668,442	-		GFF4672	0.40	+0.2
4,668,442	-		GFF4672	0.40	+0.3
4,668,442	-		GFF4672	0.40	-0.6
4,668,442	-		GFF4672	0.40	+1.0
4,668,442	-		GFF4672	0.40	-0.3
4,668,442	-		GFF4672	0.40	+0.1
4,668,442	-		GFF4672	0.40	-0.7
4,668,442	-		GFF4672	0.40	-0.6
4,668,442	-		GFF4672	0.40	-0.3
4,668,442	-		GFF4672	0.40	-0.1
4,668,442	-		GFF4672	0.40	-0.9
4,668,442	-		GFF4672	0.40	-0.6
4,668,442	-		GFF4672	0.40	+1.3
4,668,442	-		GFF4672	0.40	-0.2
4,668,442	-		GFF4672	0.40	-1.3
4,668,442	-		GFF4672	0.40	-1.1
4,668,442	-		GFF4672	0.40	-0.9
4,668,442	-		GFF4672	0.40	-0.1
4,668,442	-		GFF4672	0.40	+0.3
4,668,442	-		GFF4672	0.40	-1.4
4,668,442	-		GFF4672	0.40	+0.0
4,668,442	-		GFF4672	0.40	-2.6
4,668,442	-		GFF4672	0.40	-0.4
4,668,442	-		GFF4672	0.40	+1.2
4,668,442	-		GFF4672	0.40	-0.5
4,668,442	-		GFF4672	0.40	-0.5
4,668,442	-		GFF4672	0.40	-1.2
4,668,442	-		GFF4672	0.40	-0.4
4,668,442	-		GFF4672	0.40	+0.8
4,668,442	-		GFF4672	0.40	+1.1
4,668,442	-		GFF4672	0.40	+0.6
4,668,442	-		GFF4672	0.40	-0.9
4,668,442	-		GFF4672	0.40	-0.7
4,668,442	-		GFF4672	0.40	-1.4
4,668,442	-		GFF4672	0.40	+0.1
4,668,442	-		GFF4672	0.40	+1.5
4,668,442	-		GFF4672	0.40	-0.1
4,668,442	-		GFF4672	0.40	-0.5
4,668,442	-		GFF4672	0.40	-1.7
4,668,442	-		GFF4672	0.40	+0.1
4,668,442	-		GFF4672	0.40	+1.3
4,668,442	-		GFF4672	0.40	+0.6
4,668,451	+		GFF4672	0.41	+1.0
4,668,451	+		GFF4672	0.41	-0.1
4,668,470	+		GFF4672	0.43	+0.4
4,668,475	+		GFF4672	0.44	+0.4
4,668,477	+		GFF4672	0.44	-0.7
4,668,478	-		GFF4672	0.44	+0.6
4,668,478	-		GFF4672	0.44	-2.5
4,668,485	-		GFF4672	0.45	+0.8
4,668,492	+		GFF4672	0.46	-1.4
4,668,492	+		GFF4672	0.46	-1.3
4,668,497	+		GFF4672	0.46	+0.0
4,668,497	+		GFF4672	0.46	-0.7
4,668,497	+		GFF4672	0.46	-1.1
4,668,497	-		GFF4672	0.46	-0.0
4,668,499	-		GFF4672	0.46	-0.8
4,668,505	-		GFF4672	0.47	-1.4
4,668,505	-		GFF4672	0.47	+1.7
4,668,505	-		GFF4672	0.47	-0.9
4,668,505	-		GFF4672	0.47	+0.8
4,668,510	-		GFF4672	0.48	-0.6
4,668,510	-		GFF4672	0.48	+1.1
4,668,510	-		GFF4672	0.48	+0.7
4,668,510	-		GFF4672	0.48	-0.8
4,668,515	+		GFF4672	0.48	-0.5
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