Strain Fitness in Sphingobium sp. HT1-2 around GFF4659

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,658,602	-				-0.2
4,658,607	+				+0.3
4,658,608	+				-1.0
4,658,608	+				-1.6
4,658,615	-				-1.6
4,658,615	-				-1.5
4,658,616	-				-0.8
4,658,616	-				+1.0
4,658,616	-				+0.1
4,658,637	+				+1.2
4,658,638	+				-0.5
4,658,645	+				-0.9
4,658,646	-				-0.7
4,658,646	-				+0.7
4,658,653	-				-2.4
4,658,653	-				-1.3
4,658,663	+				-0.0
4,658,676	+				-1.6
4,658,676	+				-0.3
4,658,677	+				-1.0
4,658,677	+				-1.3
4,658,686	-				-1.3
4,658,703	+				-1.6
4,658,723	+				+1.3
4,658,734	+				-2.9
4,658,746	+				-1.6
4,658,746	+				-0.3
4,658,769	+				-1.8
4,658,769	+				+0.4
4,658,770	+				-0.2
4,658,802	-				-1.1
4,658,807	-				+1.0
4,658,816	+				+0.7
4,658,816	+				-0.0
4,658,816	+				-1.4
4,658,816	+				+0.0
4,658,816	+				-2.0
4,658,850	+				-0.7
4,658,850	+				-0.9
4,658,877	+				-0.0
4,658,877	+				-0.9
4,658,885	-				+0.4
4,658,908	+				-0.3
4,658,908	+				-0.8
4,658,912	-				-0.6
4,658,916	-				+0.3
4,658,916	-				-2.4
4,658,923	+		GFF4658	0.10	-1.8
4,658,923	+		GFF4658	0.10	+0.8
4,658,923	+		GFF4658	0.10	-0.3
4,658,931	-		GFF4658	0.11	-1.0
4,658,937	+		GFF4658	0.12	-0.8
4,658,937	+		GFF4658	0.12	-1.8
4,658,937	+		GFF4658	0.12	-0.9
4,658,939	+		GFF4658	0.12	-0.1
4,658,958	+		GFF4658	0.15	-0.6
4,658,958	+		GFF4658	0.15	+0.8
4,658,966	+		GFF4658	0.16	-0.2
4,658,966	-		GFF4658	0.16	-1.3
4,658,966	-		GFF4658	0.16	-0.6
4,658,978	-		GFF4658	0.18	+0.2
4,658,993	+		GFF4658	0.20	-0.9
4,658,993	-		GFF4658	0.20	-1.4
4,659,005	+		GFF4658	0.21	-1.5
4,659,013	-		GFF4658	0.22	-0.9
4,659,022	+		GFF4658	0.23	-0.9
4,659,052	+		GFF4658	0.27	-0.5
4,659,059	-		GFF4658	0.28	-1.0
4,659,103	-		GFF4658	0.34	-2.5
4,659,103	-		GFF4658	0.34	-0.9
4,659,132	-		GFF4658	0.38	-0.7
4,659,151	+		GFF4658	0.41	-0.4
4,659,159	-		GFF4658	0.42	-2.0
4,659,159	-		GFF4658	0.42	-0.7
4,659,162	+		GFF4658	0.42	-1.8
4,659,162	-		GFF4658	0.42	-0.5
4,659,167	-		GFF4658	0.43	-0.2
4,659,186	-		GFF4658	0.45	-1.2
4,659,215	-		GFF4658	0.49	-0.5
4,659,215	-		GFF4658	0.49	-1.5
4,659,243	-		GFF4658	0.53	+0.4
4,659,246	+		GFF4658	0.53	-2.9
4,659,255	-		GFF4658	0.55	+1.1
4,659,260	-		GFF4658	0.55	-1.9
4,659,260	-		GFF4658	0.55	-0.3
4,659,266	+		GFF4658	0.56	-0.6
4,659,266	+		GFF4658	0.56	-0.3
4,659,266	+		GFF4658	0.56	-1.3
4,659,266	+		GFF4658	0.56	-0.6
4,659,266	+		GFF4658	0.56	-1.3
4,659,266	+		GFF4658	0.56	-0.1
4,659,266	+		GFF4658	0.56	+0.2
4,659,266	+		GFF4658	0.56	-0.0
4,659,266	+		GFF4658	0.56	-0.5
4,659,266	+		GFF4658	0.56	-1.2
4,659,266	+		GFF4658	0.56	-0.2
4,659,266	+		GFF4658	0.56	-0.2
4,659,266	+		GFF4658	0.56	-1.4
4,659,266	+		GFF4658	0.56	+0.8
4,659,266	+		GFF4658	0.56	-0.2
4,659,266	+		GFF4658	0.56	-0.0
4,659,271	+		GFF4658	0.57	-1.1
4,659,271	+		GFF4658	0.57	-0.5
4,659,271	+		GFF4658	0.57	+0.2
4,659,271	+		GFF4658	0.57	-2.3
4,659,271	+		GFF4658	0.57	-0.8
4,659,274	-		GFF4658	0.57	+0.4
4,659,274	-		GFF4658	0.57	-1.3
4,659,274	-		GFF4658	0.57	-2.0
4,659,274	-		GFF4658	0.57	-1.0
4,659,274	-		GFF4658	0.57	+0.1
4,659,274	-		GFF4658	0.57	-1.8
4,659,274	-		GFF4658	0.57	-1.4
4,659,274	-		GFF4658	0.57	+0.8
4,659,274	-		GFF4658	0.57	+0.6
4,659,274	-		GFF4658	0.57	-1.7
4,659,274	-		GFF4658	0.57	-0.9
4,659,274	-		GFF4658	0.57	-0.9
4,659,274	-		GFF4658	0.57	-1.1
4,659,274	-		GFF4658	0.57	-0.0
4,659,274	-		GFF4658	0.57	-0.5
4,659,276	+		GFF4658	0.57	+1.8
4,659,276	+		GFF4658	0.57	+0.8
4,659,276	+		GFF4658	0.57	-1.9
4,659,276	+		GFF4658	0.57	-0.7
4,659,279	-		GFF4658	0.58	-0.3
4,659,279	-		GFF4658	0.58	+0.4
4,659,279	-		GFF4658	0.58	-0.4
4,659,279	-		GFF4658	0.58	-1.0
4,659,279	-		GFF4658	0.58	-0.9
4,659,281	+		GFF4658	0.58	+0.9
4,659,284	-		GFF4658	0.59	+0.3
4,659,284	-		GFF4658	0.59	+0.1
4,659,284	-		GFF4658	0.59	-2.3
4,659,284	-		GFF4658	0.59	+0.7
4,659,284	-		GFF4658	0.59	-0.7
4,659,284	-		GFF4658	0.59	-1.0
4,659,284	-		GFF4658	0.59	-0.8
4,659,285	-		GFF4658	0.59	-1.5
4,659,290	+		GFF4658	0.59	+0.9
4,659,290	+		GFF4658	0.59	-1.5
4,659,290	+		GFF4658	0.59	+1.1
4,659,290	+		GFF4658	0.59	+1.0
4,659,291	-		GFF4658	0.59	+0.4
4,659,298	-		GFF4658	0.60	-0.3
4,659,317	-		GFF4658	0.63	-0.0
4,659,326	-		GFF4658	0.64	-0.2
4,659,326	-		GFF4658	0.64	-1.1
4,659,392	+		GFF4658	0.73	+0.5
4,659,407	+		GFF4658	0.75	-0.3
4,659,428	+		GFF4658	0.78	-1.3
4,659,436	-		GFF4658	0.79	-0.5
4,659,472	-		GFF4658	0.84	-1.0
4,659,474	-		GFF4658	0.84	-1.4
4,659,474	-		GFF4658	0.84	+0.2
4,659,482	-		GFF4658	0.85	-0.0
4,659,501	+		GFF4658	0.88	+1.6
4,659,503	-		GFF4658	0.88	-1.4
4,659,503	-		GFF4658	0.88	+1.4
4,659,506	+		GFF4658	0.88	-1.1
4,659,514	-		GFF4658	0.89	-1.1
4,659,519	+				-1.2
4,659,519	+				-0.9
4,659,541	+				-0.5
4,659,546	+				-1.4
4,659,549	-				+0.3
4,659,554	-				-0.1
4,659,595	-				+0.3
4,659,638	+				-0.2
4,659,638	+				-0.6
4,659,646	-				-1.2
4,659,685	-				+0.9
4,659,685	-				-0.5
4,659,685	-				-0.5
4,659,685	-				-1.4
4,659,686	-				-1.4
4,659,692	-				+0.3
4,659,735	+		GFF4659	0.14	+0.3
4,659,735	+		GFF4659	0.14	+0.1
4,659,762	+		GFF4659	0.17	+0.0
4,659,772	+		GFF4659	0.18	-0.2
4,659,780	+		GFF4659	0.18	+0.2
4,659,789	-		GFF4659	0.19	-1.4
4,659,792	+		GFF4659	0.20	-0.5
4,659,800	-		GFF4659	0.20	-0.5
4,659,800	-		GFF4659	0.20	+0.4
4,659,843	+		GFF4659	0.25	+0.6
4,659,851	-		GFF4659	0.25	-1.0
4,659,851	-		GFF4659	0.25	-0.9
4,659,858	-		GFF4659	0.26	+0.1
4,659,884	+		GFF4659	0.29	-1.1
4,659,884	+		GFF4659	0.29	-0.2
4,659,918	+		GFF4659	0.32	+1.2
4,659,928	-		GFF4659	0.33	-0.7
4,659,931	+		GFF4659	0.33	-1.6
4,659,952	+		GFF4659	0.35	-0.6
4,659,953	+		GFF4659	0.35	-0.1
4,659,953	+		GFF4659	0.35	-0.2
4,659,965	-		GFF4659	0.36	-1.0
4,659,967	+		GFF4659	0.37	-1.4
4,659,970	-		GFF4659	0.37	-0.0
4,659,970	-		GFF4659	0.37	-0.2
4,659,972	+		GFF4659	0.37	-1.8
4,659,994	-		GFF4659	0.39	-0.8
4,659,995	-		GFF4659	0.39	-1.1
4,659,995	-		GFF4659	0.39	-0.0
4,660,006	-		GFF4659	0.40	-1.3
4,660,006	-		GFF4659	0.40	-1.0
4,660,013	+		GFF4659	0.41	-1.8
4,660,013	+		GFF4659	0.41	-0.8
4,660,013	+		GFF4659	0.41	-1.8
4,660,013	+		GFF4659	0.41	-0.5
4,660,018	+		GFF4659	0.42	-0.7
4,660,021	-		GFF4659	0.42	-1.2
4,660,021	-		GFF4659	0.42	-0.6
4,660,066	+		GFF4659	0.46	-0.8
4,660,066	-		GFF4659	0.46	-0.8
4,660,066	-		GFF4659	0.46	-1.9
4,660,067	-		GFF4659	0.46	-1.2
4,660,068	+		GFF4659	0.46	-1.3
4,660,076	-		GFF4659	0.47	-0.8
4,660,076	-		GFF4659	0.47	-0.4
4,660,076	-		GFF4659	0.47	-1.0
4,660,088	+		GFF4659	0.48	-1.1
4,660,091	-		GFF4659	0.49	-2.2
4,660,094	-		GFF4659	0.49	+1.1
4,660,096	-		GFF4659	0.49	-1.1
4,660,111	-		GFF4659	0.51	+0.6
4,660,133	-		GFF4659	0.53	-0.7
4,660,145	+		GFF4659	0.54	+0.6
4,660,145	+		GFF4659	0.54	+0.3
4,660,145	+		GFF4659	0.54	-1.1
4,660,145	+		GFF4659	0.54	-0.2
4,660,145	+		GFF4659	0.54	+1.3
4,660,153	-		GFF4659	0.55	-0.5
4,660,153	-		GFF4659	0.55	-0.4
4,660,153	-		GFF4659	0.55	-0.1
4,660,153	-		GFF4659	0.55	-0.1
4,660,153	-		GFF4659	0.55	-0.9
4,660,153	-		GFF4659	0.55	-1.1
4,660,155	-		GFF4659	0.55	-0.5
4,660,160	-		GFF4659	0.55	-1.5
4,660,164	-		GFF4659	0.56	-2.4
4,660,166	+		GFF4659	0.56	-0.0
4,660,174	-		GFF4659	0.57	+0.9
4,660,179	-		GFF4659	0.57	+0.2
4,660,180	+		GFF4659	0.57	+0.7
4,660,180	+		GFF4659	0.57	-1.1
4,660,188	+		GFF4659	0.58	-1.6
4,660,188	-		GFF4659	0.58	-0.2
4,660,188	-		GFF4659	0.58	-0.8
4,660,196	-		GFF4659	0.59	+0.2
4,660,196	-		GFF4659	0.59	+0.6
4,660,196	-		GFF4659	0.59	-1.2
4,660,196	-		GFF4659	0.59	-1.2
4,660,201	-		GFF4659	0.59	-1.0
4,660,211	-		GFF4659	0.60	-1.5
4,660,211	-		GFF4659	0.60	-1.5
4,660,212	+		GFF4659	0.60	-0.7
4,660,213	+		GFF4659	0.61	-1.4
4,660,218	+		GFF4659	0.61	-0.5
4,660,221	-		GFF4659	0.61	-1.0
4,660,229	+		GFF4659	0.62	+0.2
4,660,231	-		GFF4659	0.62	-0.6
4,660,231	-		GFF4659	0.62	-0.5
4,660,231	-		GFF4659	0.62	-0.2
4,660,231	-		GFF4659	0.62	-1.4
4,660,237	-		GFF4659	0.63	-0.3
4,660,237	-		GFF4659	0.63	+0.2
4,660,237	-		GFF4659	0.63	-0.7
4,660,247	-		GFF4659	0.64	-0.9
4,660,254	-		GFF4659	0.65	-1.2
4,660,254	-		GFF4659	0.65	-0.5
4,660,270	-		GFF4659	0.66	-0.1
4,660,275	+		GFF4659	0.67	-0.1
4,660,278	-		GFF4659	0.67	-1.2
4,660,293	+		GFF4659	0.68	-0.7
4,660,293	+		GFF4659	0.68	-0.6
4,660,293	+		GFF4659	0.68	-1.5
4,660,293	+		GFF4659	0.68	+0.7
4,660,293	+		GFF4659	0.68	-1.6
4,660,293	+		GFF4659	0.68	+1.1
4,660,301	-		GFF4659	0.69	-0.3
4,660,301	-		GFF4659	0.69	-2.1
4,660,309	-		GFF4659	0.70	-0.9
4,660,311	-		GFF4659	0.70	+0.2
4,660,328	+		GFF4659	0.72	-0.6
4,660,343	-		GFF4659	0.73	-0.7
4,660,345	+		GFF4659	0.73	+0.7
4,660,345	+		GFF4659	0.73	+2.2
4,660,348	-		GFF4659	0.74	-0.5
4,660,348	-		GFF4659	0.74	-0.3
4,660,348	-		GFF4659	0.74	-1.6
4,660,353	-		GFF4659	0.74	-0.2
4,660,373	+		GFF4659	0.76	-0.6
4,660,381	-		GFF4659	0.77	-1.0
4,660,384	+		GFF4659	0.77	-0.5
4,660,384	+		GFF4659	0.77	-0.6
4,660,384	+		GFF4659	0.77	-0.1
4,660,384	+		GFF4659	0.77	-2.0
4,660,392	-		GFF4659	0.78	-0.1
4,660,392	-		GFF4659	0.78	-0.9
4,660,392	-		GFF4659	0.78	-1.5
4,660,392	-		GFF4659	0.78	-1.3
4,660,392	-		GFF4659	0.78	-0.9
4,660,392	-		GFF4659	0.78	-1.3
4,660,392	-		GFF4659	0.78	-0.1
4,660,401	+		GFF4659	0.79	-0.5
4,660,404	-		GFF4659	0.79	-1.4
4,660,411	+		GFF4659	0.80	-0.8
4,660,411	+		GFF4659	0.80	+1.1
4,660,411	+		GFF4659	0.80	-0.6
4,660,416	+		GFF4659	0.80	-0.8
4,660,418	+		GFF4659	0.80	-0.5
4,660,418	+		GFF4659	0.80	-0.9
4,660,419	-		GFF4659	0.81	-0.5
4,660,419	-		GFF4659	0.81	-1.4
4,660,424	-		GFF4659	0.81	-0.5
4,660,426	-		GFF4659	0.81	+0.5
4,660,426	-		GFF4659	0.81	-0.5
4,660,426	-		GFF4659	0.81	-1.1
4,660,426	-		GFF4659	0.81	-0.8
4,660,440	+		GFF4659	0.83	-0.7
4,660,450	+		GFF4659	0.84	+0.2
4,660,450	+		GFF4659	0.84	-0.9
4,660,458	-		GFF4659	0.84	-1.3
4,660,467	+		GFF4659	0.85	-0.5
4,660,467	+		GFF4659	0.85	-0.9
4,660,470	-		GFF4659	0.86	-0.6
4,660,475	-		GFF4659	0.86	+0.3
4,660,475	-		GFF4659	0.86	-1.1
4,660,475	-		GFF4659	0.86	-1.3
4,660,478	+		GFF4659	0.86	-1.7
4,660,480	-		GFF4659	0.86	+0.1
4,660,490	-		GFF4659	0.87	+0.6
4,660,491	+		GFF4659	0.88	-0.6
4,660,499	-		GFF4659	0.88	-0.4
4,660,499	-		GFF4659	0.88	-0.9
4,660,499	-		GFF4659	0.88	+0.8
4,660,499	-		GFF4659	0.88	+0.8
4,660,499	-		GFF4659	0.88	-0.7
4,660,499	-		GFF4659	0.88	+0.5
4,660,508	+		GFF4659	0.89	+0.8
4,660,508	+		GFF4659	0.89	-1.6
4,660,516	-				-0.7
4,660,516	-				-0.3
4,660,550	+				+0.5
4,660,555	+				+1.9
4,660,557	-				+0.1
4,660,557	-				-1.5
4,660,569	+				-0.2
4,660,569	+				+0.2
4,660,569	+				+0.5
4,660,579	+				-1.5
4,660,579	+				+0.1
4,660,579	+				+0.3
4,660,579	+				-1.5
4,660,581	+				-0.4
4,660,581	+				+1.0
4,660,582	-				-0.8
4,660,582	-				-0.2
4,660,587	-				-1.6
4,660,587	-				+0.5
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4,661,543	+				+0.0
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4,661,551	-				+0.9
4,661,551	-				+0.1
4,661,551	-				-1.7
4,661,568	-				-1.4
4,661,572	-				-1.0
4,661,585	-				-2.5
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4,661,598	-				-0.3
4,661,604	+				-2.0
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