Strain Fitness in Sphingobium sp. HT1-2 around GFF4617

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,611,195	+		GFF4616	0.19	-1.0
4,611,198	-		GFF4616	0.19	-0.8
4,611,203	-		GFF4616	0.19	-1.1
4,611,203	-		GFF4616	0.19	-1.6
4,611,208	-		GFF4616	0.20	+0.2
4,611,208	-		GFF4616	0.20	+0.9
4,611,235	-		GFF4616	0.22	-1.9
4,611,246	+		GFF4616	0.23	-0.7
4,611,321	+		GFF4616	0.29	+0.0
4,611,329	+		GFF4616	0.30	+0.3
4,611,335	+		GFF4616	0.30	-1.5
4,611,336	-		GFF4616	0.30	+0.5
4,611,345	+		GFF4616	0.31	-0.5
4,611,345	+		GFF4616	0.31	-0.8
4,611,353	-		GFF4616	0.32	-0.5
4,611,355	+		GFF4616	0.32	+0.2
4,611,362	-		GFF4616	0.33	-1.5
4,611,383	+		GFF4616	0.34	-0.4
4,611,384	+		GFF4616	0.35	-0.5
4,611,391	-		GFF4616	0.35	-1.9
4,611,391	-		GFF4616	0.35	-2.0
4,611,392	-		GFF4616	0.35	-2.2
4,611,420	+		GFF4616	0.38	+0.1
4,611,420	+		GFF4616	0.38	-0.8
4,611,428	-		GFF4616	0.38	-1.5
4,611,428	-		GFF4616	0.38	-1.5
4,611,428	-		GFF4616	0.38	-2.9
4,611,432	+		GFF4616	0.39	+0.7
4,611,450	-		GFF4616	0.40	-0.9
4,611,476	+		GFF4616	0.42	-1.1
4,611,516	-		GFF4616	0.46	-1.4
4,611,528	+		GFF4616	0.47	-1.2
4,611,548	+		GFF4616	0.48	-2.0
4,611,563	+		GFF4616	0.50	-0.1
4,611,576	+		GFF4616	0.51	-0.4
4,611,594	-		GFF4616	0.52	+1.0
4,611,607	-		GFF4616	0.53	+0.7
4,611,609	+		GFF4616	0.54	-0.8
4,611,627	+		GFF4616	0.55	-1.6
4,611,678	-		GFF4616	0.59	-0.2
4,611,691	+		GFF4616	0.60	+0.5
4,611,697	+		GFF4616	0.61	-1.5
4,611,748	+		GFF4616	0.65	+0.0
4,611,748	+		GFF4616	0.65	-0.5
4,611,748	+		GFF4616	0.65	-1.2
4,611,748	+		GFF4616	0.65	-1.1
4,611,756	-		GFF4616	0.66	-0.5
4,611,756	-		GFF4616	0.66	-1.2
4,611,756	-		GFF4616	0.66	+0.1
4,611,756	-		GFF4616	0.66	-0.4
4,611,757	-		GFF4616	0.66	-0.2
4,611,757	-		GFF4616	0.66	-1.5
4,611,782	+		GFF4616	0.68	+0.4
4,611,782	+		GFF4616	0.68	-2.4
4,611,782	+		GFF4616	0.68	-0.2
4,611,790	-		GFF4616	0.69	-0.7
4,611,816	+		GFF4616	0.71	-1.0
4,611,841	+		GFF4616	0.73	-0.7
4,611,841	+		GFF4616	0.73	+0.1
4,611,841	+		GFF4616	0.73	-1.5
4,611,841	+		GFF4616	0.73	-1.4
4,611,841	+		GFF4616	0.73	-0.5
4,611,841	+		GFF4616	0.73	+1.5
4,611,841	+		GFF4616	0.73	-0.1
4,611,841	+		GFF4616	0.73	+0.8
4,611,849	-		GFF4616	0.74	-0.9
4,611,849	-		GFF4616	0.74	-0.4
4,611,849	-		GFF4616	0.74	-1.6
4,611,849	-		GFF4616	0.74	-0.8
4,611,849	-		GFF4616	0.74	-1.8
4,611,875	+		GFF4616	0.76	-1.4
4,611,875	+		GFF4616	0.76	-0.8
4,611,880	+		GFF4616	0.76	-1.0
4,611,888	-		GFF4616	0.77	+0.1
4,611,888	-		GFF4616	0.77	-1.2
4,611,906	+		GFF4616	0.79	-0.8
4,611,914	-		GFF4616	0.79	-1.1
4,611,914	-		GFF4616	0.79	-0.7
4,611,916	+		GFF4616	0.79	+2.0
4,611,916	+		GFF4616	0.79	-1.2
4,611,916	+		GFF4616	0.79	-0.1
4,611,924	-		GFF4616	0.80	-1.6
4,611,926	+		GFF4616	0.80	-0.2
4,611,930	-		GFF4616	0.81	-0.2
4,611,954	-		GFF4616	0.83	-1.2
4,611,965	+		GFF4616	0.84	-0.1
4,611,965	-		GFF4616	0.84	+0.9
4,611,973	-		GFF4616	0.84	-0.5
4,611,995	-		GFF4616	0.86	+0.3
4,611,996	-		GFF4616	0.86	+0.7
4,612,002	-		GFF4616	0.87	-1.7
4,612,053	+				-1.2
4,612,061	-				-1.0
4,612,073	+				-0.3
4,612,101	+				-2.0
4,612,124	+				-1.2
4,612,132	-				+0.0
4,612,154	+				-1.1
4,612,168	+				-1.3
4,612,265	+		GFF4617	0.11	-1.9
4,612,273	-		GFF4617	0.12	-1.0
4,612,275	+		GFF4617	0.12	-0.1
4,612,275	-		GFF4617	0.12	-2.8
4,612,296	-		GFF4617	0.15	+0.1
4,612,334	+		GFF4617	0.20	+0.6
4,612,367	-		GFF4617	0.24	+0.2
4,612,409	-		GFF4617	0.30	-0.2
4,612,430	-		GFF4617	0.33	-0.9
4,612,430	-		GFF4617	0.33	-0.7
4,612,430	-		GFF4617	0.33	+0.0
4,612,430	-		GFF4617	0.33	+0.2
4,612,442	+		GFF4617	0.34	-1.0
4,612,446	-		GFF4617	0.35	+0.2
4,612,448	+		GFF4617	0.35	-1.3
4,612,465	-		GFF4617	0.37	-1.6
4,612,498	-		GFF4617	0.41	-0.0
4,612,513	+		GFF4617	0.43	-1.2
4,612,513	+		GFF4617	0.43	-1.3
4,612,521	-		GFF4617	0.44	+0.6
4,612,531	-		GFF4617	0.46	-1.2
4,612,531	-		GFF4617	0.46	-1.4
4,612,531	-		GFF4617	0.46	-1.0
4,612,561	+		GFF4617	0.50	-0.3
4,612,567	-		GFF4617	0.51	+1.5
4,612,580	+		GFF4617	0.52	-0.2
4,612,580	+		GFF4617	0.52	+0.9
4,612,586	-		GFF4617	0.53	-0.9
4,612,588	-		GFF4617	0.53	-0.1
4,612,610	-		GFF4617	0.56	-0.2
4,612,612	-		GFF4617	0.56	-2.2
4,612,670	+		GFF4617	0.64	-1.2
4,612,672	-		GFF4617	0.64	+0.2
4,612,684	+		GFF4617	0.66	+1.2
4,612,684	+		GFF4617	0.66	-1.3
4,612,684	+		GFF4617	0.66	-1.4
4,612,684	+		GFF4617	0.66	+0.1
4,612,692	-		GFF4617	0.67	-0.6
4,612,692	-		GFF4617	0.67	-1.2
4,612,692	-		GFF4617	0.67	+1.5
4,612,692	-		GFF4617	0.67	+1.2
4,612,708	+		GFF4617	0.69	-0.2
4,612,758	-		GFF4617	0.76	-1.6
4,612,778	-		GFF4617	0.78	+0.8
4,612,781	+		GFF4617	0.79	+0.9
4,612,783	-		GFF4617	0.79	-0.7
4,612,824	-		GFF4617	0.84	+0.3
4,612,826	-		GFF4617	0.85	-0.1
4,612,829	-		GFF4617	0.85	-1.0
4,612,843	-		GFF4617	0.87	-0.3
4,612,852	+		GFF4617	0.88	-0.7
4,612,857	-		GFF4617	0.89	+0.5
4,612,890	-				-0.9
4,612,921	-				-1.0
4,612,925	+				+0.1
4,612,932	+				-0.1
4,612,937	+				-1.0
4,612,937	+				+0.4
4,612,945	-				-0.2
4,612,945	-				-0.1
4,612,945	-				-0.3
4,612,945	-				-1.1
4,612,949	+				-0.9
4,612,967	+				-0.5
4,612,991	+				-0.4
4,613,013	-				+0.8
4,613,054	+		GFF4618	0.14	-0.4
4,613,056	+		GFF4618	0.14	-0.9
4,613,085	+		GFF4618	0.18	+1.0
4,613,095	+		GFF4618	0.19	+0.6
4,613,095	+		GFF4618	0.19	-0.1
4,613,100	+		GFF4618	0.20	+1.0
4,613,100	+		GFF4618	0.20	+0.1
4,613,100	+		GFF4618	0.20	-1.0
4,613,100	+		GFF4618	0.20	-2.1
4,613,100	+		GFF4618	0.20	-2.2
4,613,100	+		GFF4618	0.20	-0.5
4,613,105	+		GFF4618	0.20	-1.0
4,613,108	-		GFF4618	0.21	-1.6
4,613,108	-		GFF4618	0.21	-0.9
4,613,123	+		GFF4618	0.23	-0.2
4,613,128	+		GFF4618	0.23	-0.5
4,613,128	+		GFF4618	0.23	-0.7
4,613,128	+		GFF4618	0.23	+0.1
4,613,128	+		GFF4618	0.23	-2.1
4,613,128	+		GFF4618	0.23	+0.3
4,613,128	+		GFF4618	0.23	-1.3
4,613,128	+		GFF4618	0.23	+0.7
4,613,128	+		GFF4618	0.23	+0.2
4,613,136	-		GFF4618	0.24	-1.3
4,613,155	+		GFF4618	0.27	-1.0
4,613,163	+		GFF4618	0.28	-0.6
4,613,163	-		GFF4618	0.28	-2.3
4,613,169	+		GFF4618	0.29	-1.1
4,613,176	+		GFF4618	0.29	-0.4
4,613,176	+		GFF4618	0.29	-0.7
4,613,176	+		GFF4618	0.29	+1.0
4,613,176	+		GFF4618	0.29	-1.1
4,613,176	+		GFF4618	0.29	-2.7
4,613,176	+		GFF4618	0.29	-1.7
4,613,176	+		GFF4618	0.29	-0.1
4,613,176	+		GFF4618	0.29	-0.7
4,613,176	+		GFF4618	0.29	-1.8
4,613,176	+		GFF4618	0.29	-0.0
4,613,176	+		GFF4618	0.29	-2.2
4,613,176	+		GFF4618	0.29	-0.8
4,613,176	+		GFF4618	0.29	-0.4
4,613,176	+		GFF4618	0.29	+0.3
4,613,177	-		GFF4618	0.30	-0.2
4,613,184	-		GFF4618	0.30	-1.0
4,613,184	-		GFF4618	0.30	-1.3
4,613,184	-		GFF4618	0.30	-0.4
4,613,184	-		GFF4618	0.30	+0.1
4,613,207	+		GFF4618	0.33	-0.6
4,613,209	+		GFF4618	0.34	-1.1
4,613,215	-		GFF4618	0.34	-1.3
4,613,242	+		GFF4618	0.38	-0.7
4,613,251	+		GFF4618	0.39	+0.5
4,613,256	+		GFF4618	0.40	-1.5
4,613,279	-		GFF4618	0.42	+0.6
4,613,279	-		GFF4618	0.42	+1.2
4,613,296	-		GFF4618	0.45	+0.3
4,613,308	+		GFF4618	0.46	-0.5
4,613,313	+		GFF4618	0.47	-1.6
4,613,313	+		GFF4618	0.47	-0.8
4,613,315	+		GFF4618	0.47	-0.3
4,613,321	-		GFF4618	0.48	-0.6
4,613,321	-		GFF4618	0.48	+1.8
4,613,321	-		GFF4618	0.48	-1.5
4,613,323	-		GFF4618	0.48	+0.0
4,613,336	+		GFF4618	0.50	-0.4
4,613,336	+		GFF4618	0.50	-1.0
4,613,344	-		GFF4618	0.51	-0.2
4,613,344	-		GFF4618	0.51	-0.7
4,613,347	-		GFF4618	0.51	-2.4
4,613,384	+		GFF4618	0.56	-1.5
4,613,384	+		GFF4618	0.56	+0.6
4,613,409	+		GFF4618	0.59	-0.3
4,613,409	+		GFF4618	0.59	-0.4
4,613,409	+		GFF4618	0.59	+1.6
4,613,409	+		GFF4618	0.59	-1.0
4,613,409	+		GFF4618	0.59	+0.0
4,613,414	+		GFF4618	0.59	-0.0
4,613,414	+		GFF4618	0.59	-1.4
4,613,414	+		GFF4618	0.59	-0.9
4,613,414	+		GFF4618	0.59	-0.5
4,613,414	+		GFF4618	0.59	+0.1
4,613,417	-		GFF4618	0.60	-1.7
4,613,417	-		GFF4618	0.60	-1.2
4,613,417	-		GFF4618	0.60	-0.9
4,613,417	-		GFF4618	0.60	-1.0
4,613,417	-		GFF4618	0.60	+0.1
4,613,417	-		GFF4618	0.60	+0.1
4,613,417	-		GFF4618	0.60	-0.4
4,613,417	-		GFF4618	0.60	-0.2
4,613,417	-		GFF4618	0.60	+0.5
4,613,417	-		GFF4618	0.60	+0.6
4,613,417	-		GFF4618	0.60	-0.9
4,613,419	+		GFF4618	0.60	+0.6
4,613,422	-		GFF4618	0.60	-1.9
4,613,422	-		GFF4618	0.60	-1.2
4,613,455	+		GFF4618	0.65	-1.1
4,613,455	+		GFF4618	0.65	-0.9
4,613,463	-		GFF4618	0.66	-1.9
4,613,508	-		GFF4618	0.71	-2.1
4,613,523	+		GFF4618	0.73	-1.6
4,613,523	+		GFF4618	0.73	+0.3
4,613,530	-		GFF4618	0.74	-0.3
4,613,570	+		GFF4618	0.79	+0.4
4,613,572	+		GFF4618	0.79	-1.4
4,613,582	+		GFF4618	0.81	+0.3
4,613,583	+		GFF4618	0.81	-1.5
4,613,590	-		GFF4618	0.82	-1.1
4,613,624	+		GFF4618	0.86	-2.0
4,613,627	+		GFF4618	0.86	-0.5
4,613,667	+				+0.5
4,613,684	+				-0.2
4,613,686	-				-1.6
4,613,728	+				+1.5
4,613,728	+				-2.9
4,613,728	+				+0.3
4,613,728	+				+0.0
4,613,729	+				-1.7
4,613,729	+				-1.4
4,613,729	+				-0.8
4,613,729	+				-0.7
4,613,736	-				-1.1
4,613,736	-				-0.9
4,613,737	-				-1.1
4,613,737	-				-0.5
4,613,741	+				+0.5
4,613,751	+				-0.1
4,613,753	+				-0.5
4,613,774	+				-1.6
4,613,789	+				-1.4
4,613,808	+				-1.1
4,613,840	-				-1.7
4,613,896	-		GFF4619	0.14	-1.5
4,613,904	+		GFF4619	0.14	-0.2
4,613,912	-		GFF4619	0.15	-0.8
4,613,926	-		GFF4619	0.16	-1.2