Strain Fitness in Sphingobium sp. HT1-2 around GFF4609

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,603,719	+		GFF4607	0.72	-1.4
4,603,725	-		GFF4607	0.73	-1.2
4,603,725	-		GFF4607	0.73	-2.8
4,603,727	+		GFF4607	0.73	-0.2
4,603,727	+		GFF4607	0.73	-0.7
4,603,727	+		GFF4607	0.73	-1.6
4,603,727	+		GFF4607	0.73	-1.1
4,603,732	+		GFF4607	0.73	-0.5
4,603,735	-		GFF4607	0.73	+0.2
4,603,735	-		GFF4607	0.73	-1.2
4,603,735	-		GFF4607	0.73	-0.6
4,603,735	-		GFF4607	0.73	+0.5
4,603,735	-		GFF4607	0.73	-0.8
4,603,735	-		GFF4607	0.73	+0.0
4,603,735	-		GFF4607	0.73	-0.5
4,603,740	-		GFF4607	0.74	-1.5
4,603,752	+		GFF4607	0.74	-0.2
4,603,754	+		GFF4607	0.74	-1.0
4,603,783	+		GFF4607	0.76	-1.8
4,603,792	-		GFF4607	0.76	+0.3
4,603,792	-		GFF4607	0.76	-0.4
4,603,792	-		GFF4607	0.76	-1.1
4,603,792	-		GFF4607	0.76	-0.5
4,603,792	-		GFF4607	0.76	-1.7
4,603,792	-		GFF4607	0.76	-1.9
4,603,855	+		GFF4607	0.80	-0.5
4,603,870	-		GFF4607	0.81	+0.3
4,603,900	+		GFF4607	0.82	-1.0
4,603,908	-		GFF4607	0.83	+0.3
4,603,908	-		GFF4607	0.83	+1.3
4,603,920	-		GFF4607	0.83	-0.5
4,603,929	+		GFF4607	0.84	+0.1
4,603,967	-		GFF4607	0.86	+0.0
4,603,968	+		GFF4607	0.86	-1.6
4,603,968	+		GFF4607	0.86	-1.7
4,603,968	+		GFF4607	0.86	-0.5
4,603,976	-		GFF4607	0.86	-0.5
4,603,986	+		GFF4607	0.87	-1.2
4,603,998	-		GFF4607	0.88	+0.2
4,604,005	+		GFF4607	0.88	-1.2
4,604,007	+		GFF4607	0.88	-0.8
4,604,041	+				-0.5
4,604,070	+				-0.9
4,604,070	+				+0.5
4,604,070	+				+0.5
4,604,077	+				-2.1
4,604,077	+				-0.9
4,604,077	+				+1.0
4,604,078	-				-0.2
4,604,078	-				-0.5
4,604,080	-				-0.2
4,604,085	-				-0.9
4,604,085	-				-0.9
4,604,107	+				+0.2
4,604,115	-				+0.7
4,604,115	-				-0.2
4,604,115	-				-0.2
4,604,169	+				-0.7
4,604,177	-				-2.3
4,604,177	-				+0.5
4,604,177	-				-1.5
4,604,177	-				-1.7
4,604,177	-				-0.2
4,604,177	-				-2.2
4,604,218	+				-0.5
4,604,218	+				-0.1
4,604,218	+				-0.3
4,604,218	+				+0.3
4,604,218	-				-1.5
4,604,219	+				+0.5
4,604,219	+				-0.5
4,604,219	-				-1.7
4,604,226	-				+0.1
4,604,226	-				-1.2
4,604,226	-				-0.8
4,604,227	-				+0.3
4,604,227	-				-1.2
4,604,227	-				-2.0
4,604,227	-				-0.2
4,604,229	+				-0.8
4,604,229	+				-0.5
4,604,229	+				-1.5
4,604,229	+				+1.7
4,604,229	+				-0.5
4,604,229	+				-0.8
4,604,237	-				-0.5
4,604,237	-				-1.7
4,604,237	-				-1.2
4,604,237	-				-1.5
4,604,237	-				-0.0
4,604,237	-				-2.2
4,604,278	-				-1.6
4,604,334	-				+0.5
4,604,337	+				-1.2
4,604,378	-				+0.5
4,604,390	+				-0.1
4,604,390	+				-0.5
4,604,390	+				+0.4
4,604,390	+				-1.5
4,604,390	-				+1.0
4,604,398	-				-0.5
4,604,398	-				-0.8
4,604,398	-				-0.9
4,604,398	-				-0.5
4,604,425	-				+0.1
4,604,436	-		GFF4608	0.17	+0.1
4,604,452	+		GFF4608	0.27	+0.1
4,604,460	-		GFF4608	0.32	-0.0
4,604,472	-		GFF4608	0.40	-1.1
4,604,491	-		GFF4608	0.52	-0.8
4,604,496	-		GFF4608	0.55	-0.7
4,604,501	+		GFF4608	0.58	-0.9
4,604,501	+		GFF4608	0.58	+0.9
4,604,501	+		GFF4608	0.58	-1.4
4,604,509	-		GFF4608	0.63	-2.8
4,604,509	-		GFF4608	0.63	-0.8
4,604,537	+		GFF4608	0.81	-2.0
4,604,537	+		GFF4608	0.81	-0.3
4,604,543	-		GFF4608	0.85	-0.7
4,604,546	+		GFF4608	0.87	+0.9
4,604,546	+		GFF4608	0.87	-0.7
4,604,568	+				-0.2
4,604,571	-				-1.1
4,604,600	+				+1.5
4,604,611	+				-2.6
4,604,611	+				-0.5
4,604,615	+				-1.2
4,604,619	-				-1.5
4,604,657	-				-2.0
4,604,682	+				-0.8
4,604,696	+				+1.7
4,604,749	+				+1.1
4,604,751	+				+0.2
4,604,754	+				+1.8
4,604,777	+				-1.2
4,604,778	-				-0.2
4,604,784	+				-1.2
4,604,785	-				+0.3
4,604,796	+		GFF4609	0.12	-0.7
4,604,812	-		GFF4609	0.14	+1.2
4,604,872	+		GFF4609	0.23	+0.0
4,604,872	+		GFF4609	0.23	-0.9
4,604,872	+		GFF4609	0.23	-1.2
4,604,877	+		GFF4609	0.24	-2.2
4,604,877	+		GFF4609	0.24	-1.6
4,604,877	+		GFF4609	0.24	-1.7
4,604,880	-		GFF4609	0.24	-1.0
4,604,882	+		GFF4609	0.24	-0.7
4,604,885	-		GFF4609	0.25	+1.0
4,604,902	+		GFF4609	0.27	-0.5
4,604,909	+		GFF4609	0.28	-0.3
4,604,910	+		GFF4609	0.28	-0.5
4,604,910	+		GFF4609	0.28	-0.4
4,604,916	-		GFF4609	0.29	-2.0
4,604,918	-		GFF4609	0.30	-0.4
4,604,934	+		GFF4609	0.32	+1.7
4,604,934	+		GFF4609	0.32	-0.6
4,604,942	-		GFF4609	0.33	-0.3
4,604,955	-		GFF4609	0.35	+0.3
4,604,989	+		GFF4609	0.40	+1.0
4,604,997	-		GFF4609	0.41	-0.1
4,605,013	+		GFF4609	0.44	-0.7
4,605,079	+		GFF4609	0.53	-1.4
4,605,082	-		GFF4609	0.54	-1.7
4,605,086	+		GFF4609	0.55	-0.8
4,605,087	-		GFF4609	0.55	-0.5
4,605,111	+		GFF4609	0.58	-2.0
4,605,111	+		GFF4609	0.58	-1.2
4,605,126	+		GFF4609	0.60	+0.7
4,605,136	-		GFF4609	0.62	-0.4
4,605,160	+		GFF4609	0.65	+0.3
4,605,160	+		GFF4609	0.65	-0.3
4,605,163	-		GFF4609	0.66	+0.0
4,605,169	+		GFF4609	0.67	-1.5
4,605,173	+		GFF4609	0.67	-0.7
4,605,178	+		GFF4609	0.68	-0.2
4,605,183	+		GFF4609	0.69	-1.0
4,605,186	-		GFF4609	0.69	-1.7
4,605,188	+		GFF4609	0.70	-0.9
4,605,191	-		GFF4609	0.70	-0.8
4,605,191	-		GFF4609	0.70	-0.4
4,605,196	-		GFF4609	0.71	-0.1
4,605,196	-		GFF4609	0.71	-0.3
4,605,239	+		GFF4609	0.77	-0.2
4,605,239	+		GFF4609	0.77	+0.5
4,605,239	+		GFF4609	0.77	-0.7
4,605,239	+		GFF4609	0.77	-0.7
4,605,239	+		GFF4609	0.77	+0.2
4,605,239	+		GFF4609	0.77	-2.3
4,605,239	+		GFF4609	0.77	-1.9
4,605,239	+		GFF4609	0.77	-0.3
4,605,239	+		GFF4609	0.77	-0.4
4,605,239	+		GFF4609	0.77	-0.7
4,605,239	+		GFF4609	0.77	-0.8
4,605,239	+		GFF4609	0.77	-0.1
4,605,239	+		GFF4609	0.77	-1.3
4,605,244	+		GFF4609	0.78	-0.2
4,605,247	-		GFF4609	0.78	-1.0
4,605,247	-		GFF4609	0.78	-0.2
4,605,247	-		GFF4609	0.78	+0.1
4,605,247	-		GFF4609	0.78	-0.1
4,605,247	-		GFF4609	0.78	+0.0
4,605,247	-		GFF4609	0.78	-0.2
4,605,247	-		GFF4609	0.78	-1.0
4,605,247	-		GFF4609	0.78	-1.2
4,605,247	-		GFF4609	0.78	+1.0
4,605,247	-		GFF4609	0.78	-0.8
4,605,247	-		GFF4609	0.78	-1.6
4,605,247	-		GFF4609	0.78	-0.1
4,605,247	-		GFF4609	0.78	-1.4
4,605,247	-		GFF4609	0.78	-0.7
4,605,247	-		GFF4609	0.78	-1.0
4,605,247	-		GFF4609	0.78	+0.3
4,605,247	-		GFF4609	0.78	+0.5
4,605,247	-		GFF4609	0.78	-1.1
4,605,247	-		GFF4609	0.78	-1.5
4,605,247	-		GFF4609	0.78	+0.7
4,605,247	-		GFF4609	0.78	-1.2
4,605,254	+		GFF4609	0.79	-2.0
4,605,254	+		GFF4609	0.79	+0.1
4,605,273	+		GFF4609	0.82	-0.8
4,605,280	+		GFF4609	0.83	-1.7
4,605,305	+		GFF4609	0.87	-1.6
4,605,321	+		GFF4609	0.89	-0.7
4,605,322	+		GFF4609	0.89	-1.1
4,605,327	+				-0.5
4,605,338	-				+1.5
4,605,340	+				-0.9
4,605,348	-				-1.2
4,605,348	-				-0.5
4,605,348	-				+0.1
4,605,353	-				+0.1
4,605,353	-				+0.5
4,605,353	-				-0.7
4,605,361	+				-1.1
4,605,380	-				-2.0
4,605,390	+				-2.3
4,605,398	+				-1.9
4,605,406	-				-1.2
4,605,416	-				-0.1
4,605,430	+				-2.2
4,605,435	-				-1.2
4,605,449	+				+0.1
4,605,457	+				-0.9
4,605,462	-				-1.2
4,605,469	+				-1.1
4,605,469	+				-1.4
4,605,477	-				-2.1
4,605,477	-				-0.6
4,605,477	-				-0.3
4,605,477	-				-1.5
4,605,477	-				-1.7
4,605,482	-				-0.7
4,605,492	-				-1.0
4,605,496	-				-1.6
4,605,498	+				-0.8
4,605,498	-				+0.3
4,605,506	+				-0.2
4,605,516	+				+0.2
4,605,516	+				-1.5
4,605,527	+				+0.0
4,605,531	+				-0.4
4,605,535	-				-1.1
4,605,535	-				-1.2
4,605,545	-				-0.9
4,605,557	+				+0.9
4,605,573	-		GFF4610	0.11	-1.5
4,605,573	-		GFF4610	0.11	-1.1
4,605,580	-		GFF4610	0.11	+0.4
4,605,582	+		GFF4610	0.12	-0.5
4,605,582	+		GFF4610	0.12	-1.1
4,605,590	+		GFF4610	0.12	+0.1
4,605,598	-		GFF4610	0.13	-0.2
4,605,600	+		GFF4610	0.13	-0.2
4,605,641	+		GFF4610	0.16	+0.2
4,605,641	+		GFF4610	0.16	+0.4
4,605,649	-		GFF4610	0.16	-1.1
4,605,649	-		GFF4610	0.16	+0.1
4,605,649	-		GFF4610	0.16	-1.1
4,605,659	+		GFF4610	0.17	-0.9
4,605,669	-		GFF4610	0.18	+0.9
4,605,677	+		GFF4610	0.18	-1.1
4,605,677	+		GFF4610	0.18	-1.5
4,605,677	+		GFF4610	0.18	-0.5
4,605,679	-		GFF4610	0.18	-0.4
4,605,685	-		GFF4610	0.19	-1.8
4,605,687	-		GFF4610	0.19	-2.3
4,605,699	+		GFF4610	0.20	-0.8
4,605,699	+		GFF4610	0.20	-0.6
4,605,699	+		GFF4610	0.20	+1.2
4,605,699	+		GFF4610	0.20	-0.5
4,605,699	+		GFF4610	0.20	-2.4
4,605,707	-		GFF4610	0.20	+0.3
4,605,735	-		GFF4610	0.22	-0.1
4,605,780	+		GFF4610	0.25	-0.5
4,605,780	+		GFF4610	0.25	-1.2
4,605,782	-		GFF4610	0.25	-2.2
4,605,788	-		GFF4610	0.26	-0.4
4,605,788	-		GFF4610	0.26	-1.3
4,605,792	+		GFF4610	0.26	-0.5
4,605,797	+		GFF4610	0.26	-0.8
4,605,797	+		GFF4610	0.26	+0.8
4,605,800	-		GFF4610	0.27	-1.4
4,605,800	-		GFF4610	0.27	+0.4
4,605,800	-		GFF4610	0.27	-0.5
4,605,802	+		GFF4610	0.27	-1.6
4,605,805	-		GFF4610	0.27	-1.2
4,605,805	-		GFF4610	0.27	-2.2
4,605,805	-		GFF4610	0.27	-0.5
4,605,815	+		GFF4610	0.28	-1.0
4,605,815	+		GFF4610	0.28	-3.0
4,605,815	+		GFF4610	0.28	-0.8
4,605,815	+		GFF4610	0.28	-1.8
4,605,815	+		GFF4610	0.28	-1.4
4,605,815	+		GFF4610	0.28	-0.5
4,605,815	+		GFF4610	0.28	-1.5
4,605,815	+		GFF4610	0.28	-0.6
4,605,815	+		GFF4610	0.28	-0.3
4,605,823	-		GFF4610	0.28	-2.2
4,605,823	-		GFF4610	0.28	-1.5
4,605,823	-		GFF4610	0.28	-0.5
4,605,823	-		GFF4610	0.28	-1.7
4,605,823	-		GFF4610	0.28	-0.7
4,605,823	-		GFF4610	0.28	-1.2
4,605,823	-		GFF4610	0.28	+1.3
4,605,823	-		GFF4610	0.28	+0.3
4,605,850	+		GFF4610	0.30	-0.1
4,605,850	-		GFF4610	0.30	-0.5
4,605,850	-		GFF4610	0.30	-1.0
4,605,856	-		GFF4610	0.30	-1.6
4,605,856	-		GFF4610	0.30	-1.1
4,605,858	-		GFF4610	0.31	+0.1
4,605,885	+		GFF4610	0.32	-1.9
4,605,886	+		GFF4610	0.33	-1.2
4,605,886	+		GFF4610	0.33	-1.1
4,605,914	+		GFF4610	0.34	-1.6
4,605,914	+		GFF4610	0.34	+1.0
4,605,914	+		GFF4610	0.34	-0.7
4,605,914	+		GFF4610	0.34	-1.2
4,605,914	+		GFF4610	0.34	-1.5
4,605,914	+		GFF4610	0.34	-0.2
4,605,914	+		GFF4610	0.34	-0.0
4,605,914	+		GFF4610	0.34	-1.5
4,605,914	+		GFF4610	0.34	-0.5
4,605,914	+		GFF4610	0.34	-1.4
4,605,914	+		GFF4610	0.34	+0.4
4,605,922	-		GFF4610	0.35	-0.5
4,605,922	-		GFF4610	0.35	+0.8
4,605,922	-		GFF4610	0.35	+0.0
4,605,922	-		GFF4610	0.35	-0.5
4,605,922	-		GFF4610	0.35	-0.1
4,605,922	-		GFF4610	0.35	-0.5
4,605,922	-		GFF4610	0.35	-1.8
4,605,922	-		GFF4610	0.35	-1.2
4,605,922	-		GFF4610	0.35	-0.4
4,605,965	+		GFF4610	0.38	-1.7
4,605,975	+		GFF4610	0.39	-0.5
4,605,975	+		GFF4610	0.39	-0.7
4,605,975	+		GFF4610	0.39	-0.9
4,605,983	-		GFF4610	0.39	-1.9
4,605,983	-		GFF4610	0.39	-0.9
4,605,983	-		GFF4610	0.39	-0.4
4,605,985	-		GFF4610	0.39	-0.9
4,605,998	+		GFF4610	0.40	-0.0
4,606,003	+		GFF4610	0.41	+0.3
4,606,006	-		GFF4610	0.41	-0.8
4,606,011	-		GFF4610	0.41	-0.5
4,606,021	+		GFF4610	0.42	-0.8
4,606,031	-		GFF4610	0.43	+0.5
4,606,049	+		GFF4610	0.44	+0.3
4,606,057	-		GFF4610	0.44	-1.2
4,606,101	+		GFF4610	0.47	-1.9
4,606,111	-		GFF4610	0.48	-0.7
4,606,140	-		GFF4610	0.50	-0.9
4,606,142	+		GFF4610	0.50	+1.4
4,606,180	-		GFF4610	0.53	-1.3
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