Strain Fitness in Sphingobium sp. HT1-2 around GFF4574

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,564,831	+		GFF4572	0.84	-1.8
4,564,832	+		GFF4572	0.84	-1.9
4,564,834	-		GFF4572	0.85	-1.7
4,564,837	+		GFF4572	0.85	+0.2
4,564,837	+		GFF4572	0.85	+0.5
4,564,838	+		GFF4572	0.85	-0.0
4,564,845	-		GFF4572	0.86	-0.7
4,564,845	-		GFF4572	0.86	+0.0
4,564,845	-		GFF4572	0.86	-0.9
4,564,868	+				+0.4
4,564,868	+				-0.3
4,564,876	-				-0.7
4,564,876	-				-0.9
4,564,883	+				+0.7
4,564,891	-				+0.5
4,564,891	-				-0.2
4,564,909	-				-0.7
4,564,946	+				+0.3
4,564,946	+				-1.2
4,564,954	-				+0.2
4,564,965	-				+0.5
4,564,971	+				-0.9
4,564,972	+				+0.6
4,564,972	+				-0.8
4,564,972	+				+1.6
4,564,972	+				-1.1
4,564,978	+				-0.8
4,564,980	-				+0.9
4,564,980	-				-0.3
4,564,980	-				-1.9
4,564,980	-				-1.7
4,564,980	-				-1.9
4,565,008	-				+0.4
4,565,026	-				-1.1
4,565,042	+				-1.1
4,565,109	+				-0.3
4,565,117	-				-0.4
4,565,122	-				-0.9
4,565,130	-		GFF4573	0.10	+0.3
4,565,132	-		GFF4573	0.11	-0.5
4,565,134	+		GFF4573	0.11	-0.8
4,565,138	+		GFF4573	0.12	-0.5
4,565,138	+		GFF4573	0.12	-1.5
4,565,138	+		GFF4573	0.12	-0.2
4,565,146	-		GFF4573	0.13	+0.4
4,565,146	-		GFF4573	0.13	-1.0
4,565,146	-		GFF4573	0.13	+0.5
4,565,206	+		GFF4573	0.22	+0.3
4,565,206	+		GFF4573	0.22	-0.8
4,565,206	+		GFF4573	0.22	-2.5
4,565,214	-		GFF4573	0.23	-1.1
4,565,216	+		GFF4573	0.24	+0.3
4,565,216	+		GFF4573	0.24	+1.3
4,565,216	+		GFF4573	0.24	-1.0
4,565,216	+		GFF4573	0.24	-1.2
4,565,224	-		GFF4573	0.25	-0.1
4,565,224	-		GFF4573	0.25	-1.4
4,565,239	+		GFF4573	0.27	-2.0
4,565,270	+		GFF4573	0.32	-0.1
4,565,278	-		GFF4573	0.33	-0.2
4,565,291	+		GFF4573	0.35	+0.3
4,565,291	+		GFF4573	0.35	-1.6
4,565,303	+		GFF4573	0.37	-1.0
4,565,311	-		GFF4573	0.38	-0.2
4,565,330	+		GFF4573	0.41	-0.5
4,565,331	+		GFF4573	0.41	-1.1
4,565,332	+		GFF4573	0.41	-0.6
4,565,337	+		GFF4573	0.42	-0.5
4,565,338	-		GFF4573	0.42	-2.1
4,565,340	+		GFF4573	0.43	+0.8
4,565,355	-		GFF4573	0.45	-0.3
4,565,375	+		GFF4573	0.48	+0.7
4,565,375	+		GFF4573	0.48	-0.7
4,565,376	+		GFF4573	0.48	+0.5
4,565,383	-		GFF4573	0.49	+1.5
4,565,383	-		GFF4573	0.49	+0.6
4,565,383	-		GFF4573	0.49	-1.2
4,565,399	+		GFF4573	0.52	-0.8
4,565,399	+		GFF4573	0.52	+0.1
4,565,407	-		GFF4573	0.53	+1.2
4,565,407	-		GFF4573	0.53	-0.7
4,565,440	-		GFF4573	0.58	-1.1
4,565,440	-		GFF4573	0.58	-0.2
4,565,445	-		GFF4573	0.59	-1.4
4,565,472	-		GFF4573	0.63	-0.7
4,565,480	+		GFF4573	0.64	+0.9
4,565,480	+		GFF4573	0.64	-0.7
4,565,488	-		GFF4573	0.65	-0.5
4,565,534	+		GFF4573	0.72	+0.3
4,565,542	-		GFF4573	0.73	+0.2
4,565,542	-		GFF4573	0.73	-1.7
4,565,597	-		GFF4573	0.82	-0.8
4,565,607	-		GFF4573	0.83	-1.0
4,565,625	+		GFF4573	0.86	-0.5
4,565,627	+		GFF4573	0.86	+0.7
4,565,635	+		GFF4573	0.88	-1.3
4,565,637	+		GFF4573	0.88	+1.3
4,565,637	+		GFF4573	0.88	-0.8
4,565,637	+		GFF4573	0.88	-0.4
4,565,638	-		GFF4573	0.88	-1.7
4,565,642	+		GFF4573	0.89	-0.2
4,565,642	+		GFF4573	0.89	-0.8
4,565,642	+		GFF4573	0.89	+0.0
4,565,642	+		GFF4573	0.89	-0.2
4,565,642	+		GFF4573	0.89	+0.9
4,565,642	+		GFF4573	0.89	-0.8
4,565,642	+		GFF4573	0.89	-0.1
4,565,642	+		GFF4573	0.89	+0.3
4,565,643	-		GFF4573	0.89	-1.3
4,565,645	-		GFF4573	0.89	-0.9
4,565,650	-				-1.1
4,565,650	-				+0.5
4,565,650	-				-0.2
4,565,650	-				-0.8
4,565,650	-				-2.9
4,565,669	-				-0.7
4,565,687	+				-1.2
4,565,688	+				+0.0
4,565,688	+				+0.2
4,565,688	+				-0.2
4,565,696	-				-0.5
4,565,696	-				+0.8
4,565,696	-				-1.2
4,565,696	-				+0.6
4,565,696	-				-1.1
4,565,703	+				-0.5
4,565,758	-				-0.8
4,565,758	-				-0.5
4,565,785	+				-0.5
4,565,793	+				+0.3
4,565,797	-				-0.7
4,565,813	+				-1.7
4,565,814	+				-1.2
4,565,821	-				-1.1
4,565,832	-				+0.8
4,565,855	-		GFF4574	0.16	-0.9
4,565,860	-		GFF4574	0.18	-1.6
4,565,860	-		GFF4574	0.18	-1.5
4,565,860	-		GFF4574	0.18	-0.6
4,565,860	-		GFF4574	0.18	-0.4
4,565,862	+		GFF4574	0.18	-1.0
4,565,862	+		GFF4574	0.18	-1.5
4,565,862	+		GFF4574	0.18	-0.7
4,565,862	+		GFF4574	0.18	-1.5
4,565,870	-		GFF4574	0.21	-1.0
4,565,870	-		GFF4574	0.21	+0.1
4,565,870	-		GFF4574	0.21	+0.3
4,565,870	-		GFF4574	0.21	+0.7
4,565,870	-		GFF4574	0.21	-2.0
4,565,870	-		GFF4574	0.21	-0.5
4,565,875	+		GFF4574	0.22	-1.7
4,565,875	+		GFF4574	0.22	-1.7
4,565,880	+		GFF4574	0.24	-1.0
4,565,880	+		GFF4574	0.24	+0.9
4,565,883	-		GFF4574	0.25	+0.2
4,565,888	-		GFF4574	0.26	-0.8
4,565,905	+		GFF4574	0.31	-0.5
4,565,905	+		GFF4574	0.31	-0.8
4,565,905	+		GFF4574	0.31	-0.4
4,565,905	+		GFF4574	0.31	+0.2
4,565,905	+		GFF4574	0.31	-1.0
4,565,905	+		GFF4574	0.31	-0.2
4,565,905	+		GFF4574	0.31	-0.4
4,565,905	+		GFF4574	0.31	-0.1
4,565,913	-		GFF4574	0.34	-1.0
4,565,913	-		GFF4574	0.34	+0.0
4,565,913	-		GFF4574	0.34	-0.9
4,565,913	-		GFF4574	0.34	-0.3
4,565,913	-		GFF4574	0.34	-0.8
4,565,916	+		GFF4574	0.35	+0.5
4,565,916	+		GFF4574	0.35	+1.1
4,565,916	+		GFF4574	0.35	-0.4
4,565,916	+		GFF4574	0.35	-1.5
4,565,916	+		GFF4574	0.35	+0.6
4,565,921	+		GFF4574	0.36	-0.2
4,565,924	-		GFF4574	0.37	-1.5
4,565,924	-		GFF4574	0.37	-0.2
4,565,924	-		GFF4574	0.37	-0.7
4,565,924	-		GFF4574	0.37	+0.7
4,565,924	-		GFF4574	0.37	+0.7
4,565,924	-		GFF4574	0.37	-1.4
4,565,924	-		GFF4574	0.37	-1.1
4,565,939	-		GFF4574	0.42	-1.7
4,565,942	+		GFF4574	0.43	-0.8
4,565,950	-		GFF4574	0.45	-0.5
4,565,953	+		GFF4574	0.46	-0.7
4,565,961	-		GFF4574	0.49	+0.4
4,565,970	-		GFF4574	0.51	-1.5
4,566,000	+		GFF4574	0.61	-1.1
4,566,005	+		GFF4574	0.62	+0.5
4,566,006	+		GFF4574	0.62	-0.4
4,566,006	+		GFF4574	0.62	+1.0
4,566,010	+		GFF4574	0.64	+1.0
4,566,013	-		GFF4574	0.65	-2.4
4,566,027	+		GFF4574	0.69	-1.4
4,566,027	-		GFF4574	0.69	-0.1
4,566,033	+		GFF4574	0.71	+0.0
4,566,036	-		GFF4574	0.72	-1.3
4,566,057	+		GFF4574	0.78	-1.5
4,566,072	+		GFF4574	0.83	-1.5
4,566,086	+		GFF4574	0.87	+0.0
4,566,105	-				+0.6
4,566,122	+				-1.5
4,566,122	+				-0.7
4,566,122	+				+0.4
4,566,130	-				-1.0
4,566,135	-				-0.5
4,566,164	+				-1.2
4,566,164	+				-1.4
4,566,172	-				-0.1
4,566,172	-				+0.3
4,566,184	-				+0.9
4,566,188	+				-0.8
4,566,222	-				-1.9
4,566,224	+				-0.5
4,566,224	+				-0.8
4,566,224	+				-0.7
4,566,224	+				+1.1
4,566,227	-				-1.2
4,566,231	+				-2.4
4,566,231	+				-0.6
4,566,231	+				-0.4
4,566,232	-				-2.2
4,566,232	-				-1.7
4,566,232	-				-1.3
4,566,232	-				-0.5
4,566,232	-				-0.4
4,566,232	-				+0.8
4,566,232	-				-0.5
4,566,239	-				-0.7
4,566,239	-				-1.2
4,566,239	-				-0.0
4,566,252	-				+1.2
4,566,258	+				-0.0
4,566,260	+				-0.7
4,566,268	-				+0.9
4,566,270	+				-2.7
4,566,278	-				-2.3
4,566,284	+				-1.5
4,566,291	-				-1.6
4,566,291	-				-1.1
4,566,291	-				-0.7
4,566,298	-				-0.6
4,566,311	-		GFF4575	0.10	-1.0
4,566,330	+		GFF4575	0.12	-0.8
4,566,333	+		GFF4575	0.12	-1.4
4,566,333	+		GFF4575	0.12	-1.7
4,566,338	+		GFF4575	0.12	-0.1
4,566,338	+		GFF4575	0.12	+0.8
4,566,346	-		GFF4575	0.13	-1.0
4,566,349	+		GFF4575	0.13	-0.8
4,566,349	+		GFF4575	0.13	+0.2
4,566,349	+		GFF4575	0.13	-0.1
4,566,349	+		GFF4575	0.13	-0.1
4,566,351	-		GFF4575	0.13	-1.5
4,566,357	-		GFF4575	0.14	-1.3
4,566,364	-		GFF4575	0.14	+0.1
4,566,366	+		GFF4575	0.14	-0.1
4,566,373	+		GFF4575	0.15	-1.5
4,566,381	-		GFF4575	0.16	-0.7
4,566,381	-		GFF4575	0.16	-0.7
4,566,381	-		GFF4575	0.16	-1.2
4,566,381	-		GFF4575	0.16	-1.1
4,566,393	-		GFF4575	0.17	-0.8
4,566,393	-		GFF4575	0.17	-1.3
4,566,393	-		GFF4575	0.17	-1.6
4,566,393	-		GFF4575	0.17	-1.8
4,566,403	-		GFF4575	0.17	-0.7
4,566,405	+		GFF4575	0.18	-0.8
4,566,482	-		GFF4575	0.24	+0.0
4,566,486	-		GFF4575	0.24	-1.0
4,566,489	+		GFF4575	0.24	-0.5
4,566,489	+		GFF4575	0.24	-1.6
4,566,494	+		GFF4575	0.25	-2.0
4,566,494	+		GFF4575	0.25	+0.8
4,566,494	+		GFF4575	0.25	-0.5
4,566,494	+		GFF4575	0.25	-1.2
4,566,494	+		GFF4575	0.25	-2.0
4,566,494	+		GFF4575	0.25	-1.3
4,566,494	+		GFF4575	0.25	-1.5
4,566,499	+		GFF4575	0.25	+0.1
4,566,499	+		GFF4575	0.25	-1.4
4,566,499	+		GFF4575	0.25	-0.5
4,566,502	-		GFF4575	0.25	+0.1
4,566,502	-		GFF4575	0.25	+0.6
4,566,502	-		GFF4575	0.25	-0.5
4,566,502	-		GFF4575	0.25	+0.5
4,566,502	-		GFF4575	0.25	+0.5
4,566,502	-		GFF4575	0.25	-1.0
4,566,502	-		GFF4575	0.25	-0.5
4,566,502	-		GFF4575	0.25	-1.4
4,566,502	-		GFF4575	0.25	-1.0
4,566,507	-		GFF4575	0.26	+0.3
4,566,509	+		GFF4575	0.26	-1.1
4,566,509	+		GFF4575	0.26	-0.8
4,566,509	+		GFF4575	0.26	-0.4
4,566,509	+		GFF4575	0.26	-0.2
4,566,509	+		GFF4575	0.26	-0.2
4,566,509	+		GFF4575	0.26	-1.2
4,566,509	+		GFF4575	0.26	+0.6
4,566,509	+		GFF4575	0.26	-0.5
4,566,509	+		GFF4575	0.26	-1.0
4,566,509	+		GFF4575	0.26	+0.3
4,566,509	+		GFF4575	0.26	+0.6
4,566,509	+		GFF4575	0.26	-1.5
4,566,512	-		GFF4575	0.26	+1.5
4,566,517	-		GFF4575	0.27	-0.4
4,566,517	-		GFF4575	0.27	-0.1
4,566,517	-		GFF4575	0.27	-1.3
4,566,535	+		GFF4575	0.28	-1.2
4,566,535	+		GFF4575	0.28	+0.1
4,566,535	+		GFF4575	0.28	-1.2
4,566,535	+		GFF4575	0.28	-1.0
4,566,538	-		GFF4575	0.28	-0.7
4,566,538	-		GFF4575	0.28	-1.3
4,566,540	+		GFF4575	0.28	-0.5
4,566,540	+		GFF4575	0.28	-2.7
4,566,540	+		GFF4575	0.28	-0.2
4,566,540	+		GFF4575	0.28	+0.3
4,566,540	+		GFF4575	0.28	-1.0
4,566,540	+		GFF4575	0.28	-0.0
4,566,540	+		GFF4575	0.28	-1.3
4,566,540	+		GFF4575	0.28	-1.1
4,566,540	+		GFF4575	0.28	-1.2
4,566,540	+		GFF4575	0.28	-0.1
4,566,540	+		GFF4575	0.28	-1.0
4,566,540	+		GFF4575	0.28	-2.5
4,566,540	+		GFF4575	0.28	-1.1
4,566,540	+		GFF4575	0.28	-0.7
4,566,543	-		GFF4575	0.29	-0.8
4,566,543	-		GFF4575	0.29	-1.4
4,566,543	-		GFF4575	0.29	+0.1
4,566,543	-		GFF4575	0.29	+0.5
4,566,545	+		GFF4575	0.29	+0.5
4,566,548	-		GFF4575	0.29	-1.5
4,566,548	-		GFF4575	0.29	-0.9
4,566,548	-		GFF4575	0.29	-2.3
4,566,548	-		GFF4575	0.29	-1.5
4,566,548	-		GFF4575	0.29	-1.8
4,566,548	-		GFF4575	0.29	-0.2
4,566,548	-		GFF4575	0.29	-1.1
4,566,548	-		GFF4575	0.29	-0.6
4,566,548	-		GFF4575	0.29	-1.2
4,566,548	-		GFF4575	0.29	-2.6
4,566,548	-		GFF4575	0.29	-0.5
4,566,548	-		GFF4575	0.29	+0.1
4,566,548	-		GFF4575	0.29	-0.8
4,566,548	-		GFF4575	0.29	-0.1
4,566,549	+		GFF4575	0.29	-0.7
4,566,553	-		GFF4575	0.29	-1.2
4,566,553	-		GFF4575	0.29	-1.3
4,566,562	-		GFF4575	0.30	-0.1
4,566,564	+		GFF4575	0.30	-1.8
4,566,567	-		GFF4575	0.31	-1.1
4,566,569	+		GFF4575	0.31	-1.7
4,566,569	+		GFF4575	0.31	+0.6
4,566,584	+		GFF4575	0.32	-1.2
4,566,584	+		GFF4575	0.32	-1.9
4,566,584	+		GFF4575	0.32	+0.3
4,566,584	+		GFF4575	0.32	+0.3
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