Strain Fitness in Sphingobium sp. HT1-2 around GFF4505

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,499,115	-				-0.5
4,499,116	+				-2.3
4,499,129	-				+0.5
4,499,136	+				-0.2
4,499,136	+				-0.6
4,499,138	-				-0.6
4,499,162	+				+0.7
4,499,173	+				-1.0
4,499,174	+				-0.1
4,499,182	-				-0.9
4,499,192	-				-1.4
4,499,192	-				-0.6
4,499,227	+				-1.6
4,499,230	+				-2.0
4,499,235	+				-1.1
4,499,238	-				+0.2
4,499,248	-				-0.2
4,499,255	-				-0.3
4,499,266	+				-0.3
4,499,266	+				-0.5
4,499,299	+				+2.2
4,499,299	+				-0.2
4,499,305	-				+0.0
4,499,307	-				-0.5
4,499,307	-				+0.1
4,499,309	+				-0.1
4,499,309	+				-0.9
4,499,333	+				-1.0
4,499,333	+				-2.2
4,499,341	-				-1.0
4,499,354	+				+0.4
4,499,367	+				-2.0
4,499,375	-				-1.8
4,499,375	-				-1.2
4,499,377	+				-0.6
4,499,377	+				+1.2
4,499,377	-				+0.9
4,499,398	+				-0.2
4,499,406	-				-0.1
4,499,418	+				-1.1
4,499,418	+				-0.6
4,499,418	+				-1.1
4,499,418	+				-1.2
4,499,426	-				-0.7
4,499,426	-				-0.6
4,499,426	-				-0.9
4,499,426	-				-0.3
4,499,430	-				-1.1
4,499,448	+				-0.3
4,499,448	+				-1.6
4,499,456	-				-1.0
4,499,456	-				-1.0
4,499,456	-				+0.4
4,499,477	-				-2.1
4,499,498	+				-0.5
4,499,517	+		GFF4504	0.13	-0.3
4,499,542	+		GFF4504	0.20	-0.0
4,499,542	+		GFF4504	0.20	+1.6
4,499,556	+		GFF4504	0.23	-0.5
4,499,564	-		GFF4504	0.25	-1.0
4,499,570	+		GFF4504	0.27	+0.2
4,499,580	+		GFF4504	0.29	+0.0
4,499,588	-		GFF4504	0.32	-0.1
4,499,600	+		GFF4504	0.35	+0.6
4,499,612	+		GFF4504	0.38	-1.5
4,499,618	-		GFF4504	0.39	-1.1
4,499,623	-		GFF4504	0.41	+0.3
4,499,623	-		GFF4504	0.41	+0.1
4,499,625	+		GFF4504	0.41	-1.1
4,499,625	+		GFF4504	0.41	+0.4
4,499,633	-		GFF4504	0.43	+0.4
4,499,633	-		GFF4504	0.43	-1.7
4,499,643	-		GFF4504	0.46	-1.1
4,499,709	+		GFF4504	0.63	-0.3
4,499,721	+		GFF4504	0.66	-0.9
4,499,724	-		GFF4504	0.67	+0.1
4,499,724	-		GFF4504	0.67	+0.9
4,499,751	-		GFF4504	0.74	-0.2
4,499,782	-		GFF4504	0.82	-1.5
4,499,787	+		GFF4504	0.83	-0.6
4,499,795	-		GFF4504	0.85	+0.3
4,499,796	+		GFF4504	0.85	+0.3
4,499,797	-		GFF4504	0.86	-0.5
4,499,818	+				+0.5
4,499,818	+				-0.5
4,499,818	-				-0.9
4,499,826	-				-1.5
4,499,847	+				-2.0
4,499,854	+				+0.1
4,499,855	-				-1.8
4,499,862	-				-1.7
4,499,875	+				+0.0
4,499,875	+				-1.7
4,499,887	+				-0.9
4,499,892	+				-0.8
4,499,900	+				+0.9
4,499,900	+				-0.9
4,499,908	-				-1.0
4,499,908	-				-0.2
4,499,908	-				-1.4
4,499,919	+				-1.6
4,499,922	-				+0.4
4,499,927	-				+0.3
4,499,985	+				-1.0
4,499,993	+				-0.3
4,500,003	+				+0.4
4,500,003	+				-0.8
4,500,011	-				-1.1
4,500,011	-				-0.1
4,500,011	-				-1.3
4,500,011	-				-0.2
4,500,011	-				+0.1
4,500,011	-				+0.7
4,500,011	-				+0.4
4,500,018	+				-1.2
4,500,020	+				-1.2
4,500,022	-				-2.9
4,500,022	-				-1.8
4,500,022	-				-0.1
4,500,030	-				-1.5
4,500,032	+				+0.5
4,500,067	+				+0.7
4,500,067	+				-1.1
4,500,087	+				+1.1
4,500,087	+				-1.0
4,500,087	+				+0.8
4,500,095	-				-0.6
4,500,095	-				-1.5
4,500,095	-				+0.2
4,500,134	-		GFF4505	0.12	-0.1
4,500,144	-		GFF4505	0.15	+0.2
4,500,147	+		GFF4505	0.16	+0.3
4,500,154	-		GFF4505	0.18	-0.5
4,500,162	+		GFF4505	0.21	+1.1
4,500,168	-		GFF4505	0.23	-1.0
4,500,207	-		GFF4505	0.35	+1.4
4,500,208	-		GFF4505	0.36	-0.3
4,500,214	-		GFF4505	0.38	-1.4
4,500,234	+		GFF4505	0.44	-0.1
4,500,248	+		GFF4505	0.48	-0.9
4,500,248	+		GFF4505	0.48	-0.1
4,500,248	+		GFF4505	0.48	-1.4
4,500,266	+		GFF4505	0.54	+0.5
4,500,269	-		GFF4505	0.55	-2.0
4,500,276	+		GFF4505	0.57	-0.9
4,500,286	-		GFF4505	0.61	-0.1
4,500,288	+		GFF4505	0.61	-1.3
4,500,298	+		GFF4505	0.64	-0.9
4,500,334	+		GFF4505	0.76	-0.6
4,500,336	+		GFF4505	0.77	+0.0
4,500,342	-		GFF4505	0.79	-1.8
4,500,346	+		GFF4505	0.80	+1.1
4,500,356	+		GFF4505	0.83	+0.1
4,500,356	-		GFF4505	0.83	-0.1
4,500,360	+		GFF4505	0.84	+0.4
4,500,360	+		GFF4505	0.84	-1.5
4,500,360	+		GFF4505	0.84	+0.8
4,500,360	+		GFF4505	0.84	-1.7
4,500,360	+		GFF4505	0.84	+0.1
4,500,360	+		GFF4505	0.84	-0.5
4,500,360	+		GFF4505	0.84	-1.3
4,500,360	+		GFF4505	0.84	-1.5
4,500,360	+		GFF4505	0.84	+0.1
4,500,360	+		GFF4505	0.84	-1.1
4,500,360	+		GFF4505	0.84	+0.3
4,500,360	+		GFF4505	0.84	+1.6
4,500,360	+		GFF4505	0.84	-0.5
4,500,360	+		GFF4505	0.84	-1.8
4,500,360	+		GFF4505	0.84	-1.0
4,500,360	+		GFF4505	0.84	-0.6
4,500,360	+		GFF4505	0.84	+0.0
4,500,360	+		GFF4505	0.84	-0.6
4,500,360	+		GFF4505	0.84	-1.6
4,500,360	+		GFF4505	0.84	-1.1
4,500,360	+		GFF4505	0.84	-0.5
4,500,360	+		GFF4505	0.84	-2.4
4,500,360	+		GFF4505	0.84	+0.4
4,500,360	+		GFF4505	0.84	+1.3
4,500,360	+		GFF4505	0.84	-1.7
4,500,360	+		GFF4505	0.84	-1.1
4,500,360	+		GFF4505	0.84	-0.4
4,500,360	+		GFF4505	0.84	-0.8
4,500,363	-		GFF4505	0.85	-0.8
4,500,364	-		GFF4505	0.86	+0.2
4,500,368	-		GFF4505	0.87	+0.5
4,500,368	-		GFF4505	0.87	+0.7
4,500,368	-		GFF4505	0.87	+0.3
4,500,368	-		GFF4505	0.87	-1.0
4,500,368	-		GFF4505	0.87	+0.5
4,500,368	-		GFF4505	0.87	-0.4
4,500,368	-		GFF4505	0.87	+0.1
4,500,368	-		GFF4505	0.87	-0.6
4,500,368	-		GFF4505	0.87	-1.0
4,500,368	-		GFF4505	0.87	-1.3
4,500,368	-		GFF4505	0.87	-1.1
4,500,368	-		GFF4505	0.87	-0.6
4,500,368	-		GFF4505	0.87	-1.9
4,500,368	-		GFF4505	0.87	-0.6
4,500,368	-		GFF4505	0.87	+0.9
4,500,368	-		GFF4505	0.87	-0.1
4,500,368	-		GFF4505	0.87	+0.9
4,500,368	-		GFF4505	0.87	-0.7
4,500,368	-		GFF4505	0.87	-0.1
4,500,368	-		GFF4505	0.87	+0.3
4,500,368	-		GFF4505	0.87	-0.7
4,500,368	-		GFF4505	0.87	-0.1
4,500,368	-		GFF4505	0.87	+1.6
4,500,368	-		GFF4505	0.87	-0.2
4,500,368	-		GFF4505	0.87	-1.3
4,500,368	-		GFF4505	0.87	-0.8
4,500,394	+				-0.2
4,500,411	-				-0.2
4,500,433	-				+0.4
4,500,446	+				+1.2
4,500,448	+				+0.2
4,500,448	+				+0.0
4,500,469	+				-1.1
4,500,469	+				-1.7
4,500,471	+				-1.3
4,500,471	-				-0.4
4,500,471	-				+0.1
4,500,471	-				-1.5
4,500,477	-				-0.9
4,500,477	-				+0.4
4,500,477	-				-1.5
4,500,484	+				-0.4
4,500,484	+				+0.0
4,500,484	+				-0.6
4,500,487	-				-0.3
4,500,492	-				-0.9
4,500,492	-				+1.5
4,500,515	+				-0.1
4,500,515	+				-1.3
4,500,523	-		GFF4506	0.12	-0.8
4,500,523	-		GFF4506	0.12	+0.4
4,500,549	-		GFF4506	0.21	-1.1
4,500,564	-		GFF4506	0.27	-0.2
4,500,564	-		GFF4506	0.27	-0.5
4,500,564	-		GFF4506	0.27	+1.5
4,500,564	-		GFF4506	0.27	-1.5
4,500,574	+		GFF4506	0.30	-1.8
4,500,574	+		GFF4506	0.30	-1.4
4,500,586	-		GFF4506	0.34	-0.1
4,500,590	-		GFF4506	0.36	-1.9
4,500,613	-		GFF4506	0.44	-2.2
4,500,639	-		GFF4506	0.53	-0.8
4,500,654	+		GFF4506	0.59	+0.0
4,500,661	+		GFF4506	0.61	-1.1
4,500,661	+		GFF4506	0.61	+1.2
4,500,661	+		GFF4506	0.61	+1.0
4,500,661	+		GFF4506	0.61	+0.4
4,500,669	-		GFF4506	0.64	-1.4
4,500,669	-		GFF4506	0.64	-1.1
4,500,669	-		GFF4506	0.64	+0.0
4,500,669	-		GFF4506	0.64	-0.6
4,500,669	-		GFF4506	0.64	+0.0
4,500,673	+		GFF4506	0.66	+0.5
4,500,681	-		GFF4506	0.68	-1.2
4,500,718	+		GFF4506	0.82	-1.0
4,500,723	+		GFF4506	0.84	+0.6
4,500,726	+		GFF4506	0.85	+0.0
4,500,726	+		GFF4506	0.85	-0.8
4,500,731	-		GFF4506	0.86	+0.6
4,500,731	-		GFF4506	0.86	-2.0
4,500,739	-		GFF4506	0.89	+0.9
4,500,767	+				-1.1
4,500,769	+				+0.3
4,500,769	+				-0.6
4,500,769	+				+1.4
4,500,775	+				-1.5
4,500,775	-				-0.9
4,500,777	-				+1.5
4,500,777	-				-1.1
4,500,777	-				+0.3
4,500,782	-				-0.2
4,500,782	-				+0.5
4,500,788	-				-1.2
4,500,810	+				-1.5
4,500,810	+				-1.0
4,500,810	+				+1.2
4,500,810	+				+0.0
4,500,810	+				-2.4
4,500,810	+				+0.1
4,500,817	+				-1.3
4,500,817	-				-1.7
4,500,818	-				-0.5
4,500,818	-				-0.1
4,500,818	-				+0.3
4,500,818	-				-0.1
4,500,818	-				-1.7
4,500,825	-				-1.9
4,500,825	-				+0.6
4,500,832	+				+0.6
4,500,835	-				+1.6
4,500,841	-				-1.0
4,500,852	-				-0.8
4,500,858	+				-0.5
4,500,858	+				-0.6
4,500,858	+				-0.3
4,500,858	+				+0.8
4,500,858	+				+0.5
4,500,866	-				+0.3
4,500,866	-				-0.9
4,500,866	-				-0.5
4,500,866	-				-0.6
4,500,867	-				-1.3
4,500,867	-				-0.7
4,500,871	-				+0.6
4,500,880	+				-1.4
4,500,880	+				-1.6
4,500,881	+				-1.4
4,500,881	+				-0.8
4,500,881	+				-1.2
4,500,881	+				-0.1
4,500,888	-				+0.6
4,500,888	-				-0.1
4,500,889	-				-1.4
4,500,889	-				-1.1
4,500,889	-				+0.7
4,500,889	-				-0.1
4,500,889	-				-1.8
4,500,931	+				-0.3
4,500,971	+				-0.7
4,500,973	-				-0.4
4,500,981	+				+0.9
4,500,989	-				+0.5
4,501,019	-				-0.1
4,501,019	-				+1.1
4,501,019	-				-1.3
4,501,024	-				-0.9
4,501,028	+				-1.5
4,501,036	-				+1.1
4,501,040	-		GFF4507	0.12	+0.2
4,501,062	-		GFF4507	0.22	+1.1
4,501,062	-		GFF4507	0.22	-0.4
4,501,069	-		GFF4507	0.25	-1.4
4,501,104	+		GFF4507	0.41	+0.4
4,501,122	+		GFF4507	0.49	+0.0
4,501,161	-		GFF4507	0.66	-1.3
4,501,195	-		GFF4507	0.82	+0.4
4,501,222	+				-0.6
4,501,230	+				-0.3
4,501,238	-				-1.5
4,501,240	+				-0.6
4,501,240	+				-0.0
4,501,240	+				-0.6
4,501,252	-				-0.7
4,501,254	+				-0.2
4,501,254	+				-0.9
4,501,254	+				-1.7
4,501,254	+				-1.4
4,501,262	+				+0.5
4,501,262	+				+0.7
4,501,262	-				-2.7
4,501,262	-				+0.1
4,501,262	-				-0.2
4,501,262	-				+0.6
4,501,262	-				-0.6
4,501,270	-				+0.4
4,501,270	-				+0.5
4,501,272	+				-0.9
4,501,272	+				-0.2
4,501,275	-				-0.5
4,501,275	-				-2.1
4,501,280	-				-0.9
4,501,286	-				-0.1
4,501,314	-		GFF4508	0.26	-0.6
4,501,314	-		GFF4508	0.26	+1.0
4,501,333	+		GFF4508	0.38	-1.9
4,501,378	-		GFF4508	0.67	+0.8
4,501,407	+		GFF4508	0.85	+0.3
4,501,408	-		GFF4508	0.86	+0.4