Strain Fitness in Sphingobium sp. HT1-2 around GFF4423

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,418,624	+		GFF4422	0.45	-0.5
4,418,624	+		GFF4422	0.45	-1.2
4,418,630	+		GFF4422	0.45	-0.3
4,418,632	-		GFF4422	0.45	-0.2
4,418,632	-		GFF4422	0.45	-1.6
4,418,632	-		GFF4422	0.45	-1.2
4,418,633	-		GFF4422	0.45	-0.9
4,418,637	+		GFF4422	0.46	-1.1
4,418,638	-		GFF4422	0.46	-1.9
4,418,642	+		GFF4422	0.46	-1.6
4,418,642	+		GFF4422	0.46	+0.4
4,418,650	-		GFF4422	0.46	-0.9
4,418,650	-		GFF4422	0.46	-2.0
4,418,650	-		GFF4422	0.46	-0.9
4,418,682	+		GFF4422	0.48	-0.2
4,418,690	-		GFF4422	0.48	-0.1
4,418,711	+		GFF4422	0.50	-1.4
4,418,714	-		GFF4422	0.50	+0.4
4,418,757	-		GFF4422	0.52	-1.0
4,418,835	-		GFF4422	0.56	-1.0
4,418,882	+		GFF4422	0.59	-1.3
4,418,882	+		GFF4422	0.59	-0.9
4,418,882	+		GFF4422	0.59	-0.7
4,418,890	-		GFF4422	0.60	-2.1
4,418,918	+		GFF4422	0.61	-0.2
4,419,020	-		GFF4422	0.67	-0.0
4,419,028	+		GFF4422	0.67	+0.6
4,419,036	-		GFF4422	0.68	-1.2
4,419,067	+		GFF4422	0.69	-0.9
4,419,085	+		GFF4422	0.70	-0.1
4,419,114	+		GFF4422	0.72	+1.5
4,419,115	+		GFF4422	0.72	-1.4
4,419,115	+		GFF4422	0.72	-1.6
4,419,122	-		GFF4422	0.72	-0.4
4,419,122	-		GFF4422	0.72	+0.1
4,419,123	-		GFF4422	0.72	-1.9
4,419,133	+		GFF4422	0.73	-0.9
4,419,137	-		GFF4422	0.73	-1.5
4,419,141	-		GFF4422	0.73	+1.3
4,419,145	+		GFF4422	0.74	-1.1
4,419,173	-		GFF4422	0.75	-2.3
4,419,188	-		GFF4422	0.76	-0.3
4,419,220	-		GFF4422	0.78	-0.9
4,419,226	-		GFF4422	0.78	+0.0
4,419,230	+		GFF4422	0.78	+0.5
4,419,238	-		GFF4422	0.79	-0.2
4,419,260	-		GFF4422	0.80	-1.5
4,419,261	+		GFF4422	0.80	-1.0
4,419,261	+		GFF4422	0.80	-1.3
4,419,261	+		GFF4422	0.80	-0.5
4,419,261	+		GFF4422	0.80	-1.9
4,419,269	-		GFF4422	0.81	-2.2
4,419,269	-		GFF4422	0.81	-0.6
4,419,279	-		GFF4422	0.81	-0.8
4,419,286	+		GFF4422	0.81	+0.1
4,419,286	+		GFF4422	0.81	-2.0
4,419,296	-		GFF4422	0.82	-1.5
4,419,341	-		GFF4422	0.84	-1.8
4,419,342	+		GFF4422	0.85	-1.2
4,419,349	-		GFF4422	0.85	+0.6
4,419,350	-		GFF4422	0.85	-0.8
4,419,350	-		GFF4422	0.85	+0.4
4,419,350	-		GFF4422	0.85	-1.1
4,419,350	-		GFF4422	0.85	+0.8
4,419,352	+		GFF4422	0.85	-2.2
4,419,352	+		GFF4422	0.85	-1.0
4,419,359	+		GFF4422	0.85	-1.2
4,419,359	+		GFF4422	0.85	+0.0
4,419,367	+		GFF4422	0.86	+0.0
4,419,376	+		GFF4422	0.86	-1.2
4,419,381	+		GFF4422	0.87	+0.0
4,419,384	+		GFF4422	0.87	-1.1
4,419,384	+		GFF4422	0.87	-1.2
4,419,384	+		GFF4422	0.87	-0.1
4,419,384	-		GFF4422	0.87	-1.5
4,419,391	+		GFF4422	0.87	+0.0
4,419,392	-		GFF4422	0.87	-0.8
4,419,392	-		GFF4422	0.87	-1.0
4,419,399	-		GFF4422	0.88	-0.1
4,419,406	-		GFF4422	0.88	-1.2
4,419,409	-		GFF4422	0.88	-1.4
4,419,435	-		GFF4422	0.90	+0.3
4,419,469	-				-2.2
4,419,494	-				-1.5
4,419,494	-				+0.6
4,419,507	+				-2.2
4,419,512	+				-0.8
4,419,512	+				-0.2
4,419,512	+				-0.9
4,419,513	+				-0.6
4,419,515	-				-2.1
4,419,517	+				-2.0
4,419,520	-				+0.0
4,419,520	-				-1.9
4,419,520	-				-1.2
4,419,520	-				-0.5
4,419,529	-				-0.2
4,419,535	-				-0.6
4,419,535	-				-1.2
4,419,554	-				-1.5
4,419,567	+				-0.3
4,419,567	+				-1.1
4,419,573	-				-0.2
4,419,575	+				-0.2
4,419,575	-				-1.5
4,419,575	-				-1.7
4,419,575	-				-2.2
4,419,586	+				-1.5
4,419,586	+				+0.5
4,419,593	+				-0.7
4,419,593	+				-2.0
4,419,594	-				-0.4
4,419,599	-				+0.3
4,419,610	+				-0.6
4,419,615	+				-0.6
4,419,615	+				-0.8
4,419,615	+				-1.2
4,419,615	+				+0.3
4,419,615	+				-2.4
4,419,615	+				-1.5
4,419,615	+				-1.5
4,419,621	+				-1.0
4,419,622	+				-3.3
4,419,622	+				+0.1
4,419,623	-				-0.6
4,419,623	-				-1.5
4,419,623	-				+1.1
4,419,623	-				-1.5
4,419,623	-				+0.0
4,419,623	-				-1.1
4,419,623	-				+1.1
4,419,623	-				-1.2
4,419,623	-				-1.3
4,419,623	-				+0.8
4,419,629	-				-1.5
4,419,630	-				-0.5
4,419,630	-				-0.2
4,419,630	-				-1.3
4,419,631	+				+0.0
4,419,635	-				-1.5
4,419,649	-				+0.6
4,419,664	+		GFF4423	0.15	+0.2
4,419,669	+		GFF4423	0.17	-0.4
4,419,682	+		GFF4423	0.22	-0.6
4,419,682	+		GFF4423	0.22	-1.2
4,419,685	-		GFF4423	0.23	-0.2
4,419,690	-		GFF4423	0.25	-1.5
4,419,690	-		GFF4423	0.25	-1.3
4,419,692	+		GFF4423	0.26	-2.3
4,419,707	+		GFF4423	0.31	-0.3
4,419,714	-		GFF4423	0.34	+0.2
4,419,733	-		GFF4423	0.41	-1.2
4,419,735	+		GFF4423	0.42	-1.0
4,419,749	+		GFF4423	0.47	-0.9
4,419,749	+		GFF4423	0.47	-1.9
4,419,749	+		GFF4423	0.47	-0.7
4,419,754	+		GFF4423	0.49	+0.2
4,419,764	+		GFF4423	0.53	-1.1
4,419,764	+		GFF4423	0.53	-1.6
4,419,764	+		GFF4423	0.53	-0.4
4,419,764	+		GFF4423	0.53	-1.0
4,419,772	-		GFF4423	0.56	+0.4
4,419,772	-		GFF4423	0.56	+0.6
4,419,804	+		GFF4423	0.68	-1.4
4,419,821	-		GFF4423	0.75	-0.5
4,419,829	-		GFF4423	0.78	-1.0
4,419,901	-				-1.7
4,419,933	+				-0.1
4,419,933	+				+0.8
4,419,938	+				-0.3
4,419,938	+				-1.1
4,419,938	+				-1.9
4,419,938	+				+0.8
4,419,938	+				-0.0
4,419,938	+				-1.4
4,419,941	-				-0.2
4,419,946	+				+0.3
4,419,946	-				-0.9
4,419,946	-				+0.5
4,419,946	-				-0.5
4,419,946	-				-0.9
4,419,946	-				-0.4
4,419,954	-				-0.6
4,419,962	+				+0.3
4,419,969	+				+0.0
4,419,969	+				+0.3
4,419,972	-				-1.0
4,419,977	-				-1.9
4,419,990	-				-1.5
4,419,990	-				-2.9
4,420,005	+				-2.4
4,420,010	+				-1.1
4,420,010	+				-2.2
4,420,010	+				-0.7
4,420,010	+				-2.3
4,420,012	-				-1.6
4,420,013	-				-0.7
4,420,015	+				-0.2
4,420,015	+				-2.0
4,420,015	+				-1.3
4,420,017	+				+0.1
4,420,017	+				-1.9
4,420,018	-				-0.6
4,420,018	-				+0.9
4,420,023	-				-0.5
4,420,025	-				-1.7
4,420,033	+				-2.2
4,420,058	+				+0.0
4,420,058	+				+1.3
4,420,060	+				-0.0
4,420,066	-				+0.2
4,420,066	-				-0.7
4,420,066	-				-1.0
4,420,076	-				-0.0
4,420,083	-				-0.4
4,420,092	-				-1.1
4,420,094	-				+0.5
4,420,094	-				+0.1
4,420,106	+				-0.7
4,420,106	-				+0.5
4,420,114	-				-0.5
4,420,132	-				-1.7
4,420,140	-				+1.0
4,420,189	+				-1.6
4,420,210	-				-0.4
4,420,214	+				+0.0
4,420,230	+				+0.6
4,420,231	-				-1.1
4,420,250	+				+0.2
4,420,252	+				-0.5
4,420,252	+				-0.9
4,420,252	+				-0.7
4,420,258	-				-0.1
4,420,260	-				-1.2
4,420,262	-				-2.0
4,420,272	-				-0.3
4,420,279	-				+1.0
4,420,289	-				-0.9
4,420,295	-				+0.8
4,420,295	-				-2.3
4,420,299	+				+0.4
4,420,300	-				-0.1
4,420,306	-				-0.4
4,420,378	+		GFF4424	0.16	+0.6
4,420,379	+		GFF4424	0.16	-0.7
4,420,379	+		GFF4424	0.16	-0.6
4,420,379	+		GFF4424	0.16	-0.4
4,420,379	+		GFF4424	0.16	-2.2
4,420,379	+		GFF4424	0.16	-1.8
4,420,379	+		GFF4424	0.16	+1.4
4,420,379	+		GFF4424	0.16	+0.3
4,420,379	+		GFF4424	0.16	-1.4
4,420,379	+		GFF4424	0.16	+1.1
4,420,379	+		GFF4424	0.16	+0.1
4,420,379	+		GFF4424	0.16	-2.0
4,420,379	+		GFF4424	0.16	-1.4
4,420,379	+		GFF4424	0.16	-0.9
4,420,379	+		GFF4424	0.16	-2.2
4,420,379	+		GFF4424	0.16	+0.1
4,420,379	+		GFF4424	0.16	-2.1
4,420,379	+		GFF4424	0.16	+1.3
4,420,387	-		GFF4424	0.17	-1.0
4,420,387	-		GFF4424	0.17	-0.2
4,420,387	-		GFF4424	0.17	-1.1
4,420,387	-		GFF4424	0.17	-1.3
4,420,387	-		GFF4424	0.17	-1.1
4,420,387	-		GFF4424	0.17	+0.1
4,420,387	-		GFF4424	0.17	-1.1
4,420,387	-		GFF4424	0.17	-1.3
4,420,387	-		GFF4424	0.17	-0.7
4,420,387	-		GFF4424	0.17	-0.9
4,420,387	-		GFF4424	0.17	+0.3
4,420,387	-		GFF4424	0.17	+0.3
4,420,387	-		GFF4424	0.17	-1.1
4,420,397	-		GFF4424	0.18	+0.0
4,420,419	-		GFF4424	0.19	-0.6
4,420,419	-		GFF4424	0.19	-0.9
4,420,437	+		GFF4424	0.21	-0.1
4,420,437	+		GFF4424	0.21	-0.6
4,420,445	-		GFF4424	0.22	-0.6
4,420,460	+		GFF4424	0.23	-0.4
4,420,462	+		GFF4424	0.23	-0.6
4,420,462	+		GFF4424	0.23	-1.1
4,420,474	-		GFF4424	0.24	-1.0
4,420,481	+		GFF4424	0.25	-0.3
4,420,481	+		GFF4424	0.25	-1.5
4,420,481	+		GFF4424	0.25	-0.9
4,420,489	-		GFF4424	0.26	-0.1
4,420,489	-		GFF4424	0.26	-0.9
4,420,490	-		GFF4424	0.26	+0.1
4,420,494	-		GFF4424	0.26	+0.1
4,420,508	+		GFF4424	0.27	-0.7
4,420,508	+		GFF4424	0.27	-1.3
4,420,513	+		GFF4424	0.28	-1.0
4,420,529	+		GFF4424	0.29	+0.1
4,420,537	-		GFF4424	0.30	-2.2
4,420,539	+		GFF4424	0.30	-0.9
4,420,540	+		GFF4424	0.30	+0.7
4,420,540	+		GFF4424	0.30	+0.0
4,420,540	+		GFF4424	0.30	-1.1
4,420,548	-		GFF4424	0.31	-0.4
4,420,550	+		GFF4424	0.31	+0.3
4,420,558	-		GFF4424	0.32	-0.4
4,420,558	-		GFF4424	0.32	+0.3
4,420,572	-		GFF4424	0.33	-0.1
4,420,587	+		GFF4424	0.34	-0.8
4,420,587	+		GFF4424	0.34	-3.6
4,420,587	+		GFF4424	0.34	-0.4
4,420,595	-		GFF4424	0.35	-1.7
4,420,597	+		GFF4424	0.35	-1.9
4,420,607	+		GFF4424	0.36	+0.1
4,420,607	+		GFF4424	0.36	-1.5
4,420,607	+		GFF4424	0.36	-2.8
4,420,610	-		GFF4424	0.36	-2.1
4,420,625	+		GFF4424	0.38	+0.3
4,420,625	+		GFF4424	0.38	-1.0
4,420,625	+		GFF4424	0.38	-1.5
4,420,625	+		GFF4424	0.38	-0.7
4,420,625	+		GFF4424	0.38	+0.9
4,420,625	+		GFF4424	0.38	-1.8
4,420,633	-		GFF4424	0.38	+1.0
4,420,633	-		GFF4424	0.38	+0.1
4,420,633	-		GFF4424	0.38	+0.0
4,420,633	-		GFF4424	0.38	-1.0
4,420,633	-		GFF4424	0.38	-0.3
4,420,633	-		GFF4424	0.38	-0.3
4,420,633	-		GFF4424	0.38	-0.1
4,420,633	-		GFF4424	0.38	+0.4
4,420,633	-		GFF4424	0.38	-1.5
4,420,635	+		GFF4424	0.38	-1.9
4,420,635	+		GFF4424	0.38	-2.3
4,420,635	+		GFF4424	0.38	+0.3
4,420,635	+		GFF4424	0.38	-0.9
4,420,635	+		GFF4424	0.38	-0.5
4,420,635	+		GFF4424	0.38	-1.6
4,420,635	+		GFF4424	0.38	-1.2
4,420,643	-		GFF4424	0.39	+0.7
4,420,643	-		GFF4424	0.39	-1.3
4,420,643	-		GFF4424	0.39	-1.9
4,420,643	-		GFF4424	0.39	+0.2
4,420,643	-		GFF4424	0.39	+0.0
4,420,643	-		GFF4424	0.39	+0.5
4,420,643	-		GFF4424	0.39	-1.4
4,420,643	-		GFF4424	0.39	-1.3
4,420,646	+		GFF4424	0.39	-1.6
4,420,646	+		GFF4424	0.39	-0.1
4,420,646	+		GFF4424	0.39	-1.0
4,420,646	+		GFF4424	0.39	+0.1
4,420,651	+		GFF4424	0.40	-3.3
4,420,651	+		GFF4424	0.40	-0.9
4,420,654	-		GFF4424	0.40	-0.7
4,420,654	-		GFF4424	0.40	-0.1
4,420,654	-		GFF4424	0.40	+0.1
4,420,654	-		GFF4424	0.40	-2.6
4,420,659	-		GFF4424	0.41	-1.1
4,420,659	-		GFF4424	0.41	-0.1
4,420,701	-		GFF4424	0.44	-2.2
4,420,706	+		GFF4424	0.45	+0.7
4,420,710	+		GFF4424	0.45	-1.1
4,420,714	+		GFF4424	0.45	-0.9
4,420,722	-		GFF4424	0.46	-0.7
4,420,722	-		GFF4424	0.46	-0.3
4,420,722	-		GFF4424	0.46	-0.2
4,420,734	-		GFF4424	0.47	+0.8
4,420,738	+		GFF4424	0.47	+0.2
4,420,739	+		GFF4424	0.48	+0.7
4,420,743	+		GFF4424	0.48	-1.2
4,420,751	-		GFF4424	0.49	-0.5
4,420,822	-		GFF4424	0.55	-0.7
4,420,828	+		GFF4424	0.55	+0.0
4,420,833	+		GFF4424	0.56	+0.3
4,420,835	-		GFF4424	0.56	+0.3
4,420,841	-		GFF4424	0.57	+0.4
4,420,875	+		GFF4424	0.60	+0.9