Strain Fitness in Sphingobium sp. HT1-2 around GFF4395

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,395,670	+		GFF4393	0.87	+1.6
4,395,670	+		GFF4393	0.87	-0.7
4,395,678	-		GFF4393	0.88	+1.5
4,395,678	-		GFF4393	0.88	+1.0
4,395,687	+		GFF4393	0.89	-1.2
4,395,687	+		GFF4393	0.89	+0.1
4,395,688	-		GFF4393	0.89	-0.1
4,395,791	-				-1.4
4,395,792	+				+0.2
4,395,805	-				+2.0
4,395,817	-				-0.0
4,395,832	-				+0.4
4,395,842	+				-0.4
4,395,842	+				+0.1
4,395,842	+				-0.3
4,395,850	-				-1.5
4,395,850	-				-1.1
4,395,850	-				+0.9
4,395,852	+				+0.9
4,395,855	-				-1.3
4,395,882	+				-1.6
4,395,882	+				+0.1
4,395,882	+				+0.3
4,395,882	+				-1.1
4,395,882	+				-0.4
4,395,882	+				-0.2
4,395,882	+				+0.4
4,395,882	+				+0.3
4,395,890	-				+0.7
4,395,890	-				-1.2
4,395,890	-				-0.1
4,395,890	-				+0.9
4,395,890	-				-0.9
4,395,898	-				-2.2
4,395,915	-		GFF4394	0.10	-1.1
4,395,915	-		GFF4394	0.10	+0.5
4,395,915	-		GFF4394	0.10	-0.8
4,395,917	-		GFF4394	0.10	+0.4
4,395,946	-		GFF4394	0.14	+0.6
4,395,961	+		GFF4394	0.16	-0.9
4,395,961	+		GFF4394	0.16	-1.4
4,395,966	+		GFF4394	0.17	-0.1
4,395,966	+		GFF4394	0.17	-1.5
4,395,966	+		GFF4394	0.17	+0.6
4,395,966	+		GFF4394	0.17	+1.2
4,395,971	+		GFF4394	0.17	+0.3
4,395,982	+		GFF4394	0.19	-0.3
4,395,982	+		GFF4394	0.19	-0.8
4,395,989	-		GFF4394	0.19	-0.1
4,395,990	-		GFF4394	0.20	-0.3
4,396,039	-		GFF4394	0.26	-1.1
4,396,041	+		GFF4394	0.26	-0.4
4,396,041	+		GFF4394	0.26	-0.3
4,396,051	+		GFF4394	0.27	-3.1
4,396,059	-		GFF4394	0.28	+0.9
4,396,059	-		GFF4394	0.28	+1.5
4,396,059	-		GFF4394	0.28	+0.6
4,396,119	-		GFF4394	0.36	+0.1
4,396,123	+		GFF4394	0.36	+0.4
4,396,123	+		GFF4394	0.36	-0.4
4,396,173	+		GFF4394	0.42	-0.8
4,396,182	-		GFF4394	0.44	-1.0
4,396,200	+		GFF4394	0.46	+1.4
4,396,222	+		GFF4394	0.49	-1.0
4,396,230	-		GFF4394	0.50	+1.8
4,396,275	-		GFF4394	0.55	+0.5
4,396,305	+		GFF4394	0.59	-1.0
4,396,318	+		GFF4394	0.61	-0.9
4,396,326	-		GFF4394	0.62	-0.1
4,396,379	+		GFF4394	0.68	+0.6
4,396,380	+		GFF4394	0.68	-1.9
4,396,391	+		GFF4394	0.70	-0.4
4,396,398	-		GFF4394	0.71	+0.9
4,396,399	-		GFF4394	0.71	-1.4
4,396,415	+		GFF4394	0.73	-1.6
4,396,432	+		GFF4394	0.75	+0.4
4,396,432	+		GFF4394	0.75	-0.6
4,396,440	-		GFF4394	0.76	-1.0
4,396,446	+		GFF4394	0.77	-1.4
4,396,457	+		GFF4394	0.78	-0.8
4,396,457	+		GFF4394	0.78	+1.5
4,396,457	+		GFF4394	0.78	+0.2
4,396,457	+		GFF4394	0.78	-1.7
4,396,465	+		GFF4394	0.79	-1.2
4,396,465	+		GFF4394	0.79	+1.2
4,396,465	-		GFF4394	0.79	+0.1
4,396,473	-		GFF4394	0.80	-1.1
4,396,473	-		GFF4394	0.80	-1.3
4,396,473	-		GFF4394	0.80	-1.0
4,396,473	-		GFF4394	0.80	-0.6
4,396,474	-		GFF4394	0.80	-0.0
4,396,523	-		GFF4394	0.86	+1.2
4,396,538	-		GFF4394	0.88	-0.7
4,396,605	-				+0.5
4,396,632	-				+0.3
4,396,773	-		GFF4395	0.47	-1.6
4,396,784	+		GFF4395	0.51	+0.4
4,396,784	+		GFF4395	0.51	-0.7
4,396,794	+		GFF4395	0.55	+0.0
4,396,843	-		GFF4395	0.74	-0.5
4,396,862	+		GFF4395	0.81	+1.0
4,396,865	-		GFF4395	0.83	+0.5
4,396,865	-		GFF4395	0.83	-1.8
4,396,867	+		GFF4395	0.83	-0.9
4,396,867	+		GFF4395	0.83	-0.4
4,396,875	-		GFF4395	0.86	+0.5
4,396,877	+		GFF4395	0.87	-0.5
4,396,882	+		GFF4395	0.89	-0.6
4,396,944	+				-0.8
4,396,952	-				-1.7
4,396,952	-				-0.0
4,396,959	+				+1.1
4,396,985	+				+0.4
4,396,993	-				-0.9
4,397,002	+				+0.1
4,397,002	-				-0.1
4,397,065	-				+1.6
4,397,114	+				-0.8
4,397,121	+				-1.0
4,397,129	-				-0.8
4,397,131	+				+0.3
4,397,137	-				+0.1
4,397,163	-				-1.7
4,397,218	-		GFF4396	0.20	-0.7
4,397,226	-		GFF4396	0.22	+1.6
4,397,287	-		GFF4396	0.37	+1.1
4,397,294	-		GFF4396	0.38	-1.4
4,397,310	+		GFF4396	0.42	-0.3
4,397,310	+		GFF4396	0.42	+1.4
4,397,310	+		GFF4396	0.42	-0.6
4,397,315	+		GFF4396	0.43	-1.8
4,397,318	-		GFF4396	0.44	-1.9
4,397,318	-		GFF4396	0.44	+0.9
4,397,318	-		GFF4396	0.44	-0.4
4,397,325	+		GFF4396	0.46	-0.8
4,397,330	+		GFF4396	0.47	+0.1
4,397,333	-		GFF4396	0.48	+1.1
4,397,333	-		GFF4396	0.48	-1.4
4,397,337	+		GFF4396	0.49	-1.6
4,397,346	+		GFF4396	0.51	-0.5
4,397,354	-		GFF4396	0.53	-1.0
4,397,354	-		GFF4396	0.53	-0.3
4,397,365	+		GFF4396	0.55	-0.3
4,397,373	-		GFF4396	0.57	-0.7
4,397,387	+		GFF4396	0.60	+0.1
4,397,417	-		GFF4396	0.68	+0.2
4,397,427	+		GFF4396	0.70	-2.3
4,397,429	-		GFF4396	0.70	-0.5
4,397,444	-		GFF4396	0.74	-0.7
4,397,504	-		GFF4396	0.88	-2.4
4,397,522	+				+1.1
4,397,522	-				+0.0
4,397,530	-				+0.4
4,397,536	+				+0.2
4,397,541	+				-0.4
4,397,549	-				+3.2
4,397,573	+				+0.2
4,397,575	-				+0.6
4,397,575	-				+1.5
4,397,583	-				+0.3
4,397,583	-				+1.1
4,397,585	+				-0.1
4,397,593	-				+0.4
4,397,610	+				+0.3
4,397,620	+				-1.0
4,397,620	+				-0.3
4,397,623	-				+0.6
4,397,661	-				+1.2
4,397,699	+				-1.0
4,397,699	+				-0.6
4,397,732	-				-0.9
4,397,735	+				-0.4
4,397,735	+				-1.3
4,397,751	+				+0.7
4,397,751	+				-0.7
4,397,751	+				+0.7
4,397,751	+				+0.5
4,397,759	-				-0.1
4,397,759	-				-0.8
4,397,759	-				-0.7
4,397,759	-				-1.8
4,397,759	-				-0.9
4,397,759	-				-0.3
4,397,764	-				+0.4
4,397,766	-				-1.2
4,397,779	+				+0.7
4,397,800	-		GFF4397	0.11	-1.7
4,397,808	-		GFF4397	0.12	-0.3
4,397,809	+		GFF4397	0.12	-1.1
4,397,823	-		GFF4397	0.13	-0.5
4,397,858	+		GFF4397	0.16	-0.2
4,397,866	-		GFF4397	0.17	-0.0
4,397,881	+		GFF4397	0.18	+1.2
4,397,886	+		GFF4397	0.19	-1.6
4,397,891	+		GFF4397	0.19	-1.7
4,397,891	+		GFF4397	0.19	-0.2
4,397,899	-		GFF4397	0.20	-1.3
4,397,899	-		GFF4397	0.20	+0.6
4,397,899	-		GFF4397	0.20	-0.7
4,397,899	-		GFF4397	0.20	+0.1
4,397,899	-		GFF4397	0.20	+0.6
4,397,907	-		GFF4397	0.21	-1.1
4,397,909	+		GFF4397	0.21	-1.1
4,397,909	-		GFF4397	0.21	-1.3