Strain Fitness in Sphingobium sp. HT1-2 around GFF4392

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,392,923	-		GFF4391	0.65	-0.9
4,392,948	-		GFF4391	0.67	-1.1
4,392,948	-		GFF4391	0.67	+1.7
4,392,966	-		GFF4391	0.67	+0.1
4,392,966	-		GFF4391	0.67	-1.6
4,392,978	+		GFF4391	0.68	-1.3
4,393,002	+		GFF4391	0.69	-1.3
4,393,004	-		GFF4391	0.69	-1.3
4,393,010	+		GFF4391	0.69	+0.5
4,393,018	+		GFF4391	0.70	-3.6
4,393,018	+		GFF4391	0.70	-0.9
4,393,024	+		GFF4391	0.70	+0.4
4,393,024	+		GFF4391	0.70	-1.7
4,393,024	-		GFF4391	0.70	-2.1
4,393,024	-		GFF4391	0.70	-1.0
4,393,032	-		GFF4391	0.71	-0.2
4,393,058	+		GFF4391	0.72	-1.3
4,393,058	+		GFF4391	0.72	-1.3
4,393,058	+		GFF4391	0.72	+1.3
4,393,058	+		GFF4391	0.72	-2.5
4,393,058	+		GFF4391	0.72	+1.3
4,393,058	+		GFF4391	0.72	+0.1
4,393,058	+		GFF4391	0.72	-1.5
4,393,058	+		GFF4391	0.72	+0.3
4,393,058	+		GFF4391	0.72	-1.9
4,393,058	+		GFF4391	0.72	-1.0
4,393,058	+		GFF4391	0.72	-0.6
4,393,058	+		GFF4391	0.72	-0.6
4,393,058	+		GFF4391	0.72	-0.7
4,393,058	+		GFF4391	0.72	-0.9
4,393,058	+		GFF4391	0.72	+0.1
4,393,058	+		GFF4391	0.72	+0.5
4,393,058	+		GFF4391	0.72	+0.1
4,393,058	+		GFF4391	0.72	-0.9
4,393,058	+		GFF4391	0.72	-0.6
4,393,058	+		GFF4391	0.72	+0.4
4,393,058	+		GFF4391	0.72	-1.0
4,393,058	+		GFF4391	0.72	-0.9
4,393,058	+		GFF4391	0.72	-1.6
4,393,058	+		GFF4391	0.72	-0.2
4,393,058	+		GFF4391	0.72	+0.6
4,393,058	+		GFF4391	0.72	-0.7
4,393,058	+		GFF4391	0.72	-1.3
4,393,060	-		GFF4391	0.72	-2.1
4,393,060	-		GFF4391	0.72	-0.1
4,393,063	+		GFF4391	0.72	+0.7
4,393,066	-		GFF4391	0.72	-2.0
4,393,066	-		GFF4391	0.72	+1.1
4,393,066	-		GFF4391	0.72	-0.6
4,393,066	-		GFF4391	0.72	-0.6
4,393,066	-		GFF4391	0.72	+0.6
4,393,066	-		GFF4391	0.72	+0.8
4,393,066	-		GFF4391	0.72	-1.4
4,393,066	-		GFF4391	0.72	+0.9
4,393,066	-		GFF4391	0.72	+0.0
4,393,066	-		GFF4391	0.72	-1.6
4,393,066	-		GFF4391	0.72	+0.7
4,393,066	-		GFF4391	0.72	+0.5
4,393,077	+		GFF4391	0.73	-3.1
4,393,080	-		GFF4391	0.73	-0.4
4,393,082	+		GFF4391	0.73	+0.3
4,393,085	-		GFF4391	0.73	-0.7
4,393,090	-		GFF4391	0.73	-0.1
4,393,100	+		GFF4391	0.74	+0.5
4,393,100	+		GFF4391	0.74	-1.3
4,393,100	+		GFF4391	0.74	-0.7
4,393,100	+		GFF4391	0.74	-0.9
4,393,100	+		GFF4391	0.74	-0.2
4,393,100	+		GFF4391	0.74	-1.0
4,393,105	+		GFF4391	0.74	-0.4
4,393,105	+		GFF4391	0.74	-0.8
4,393,108	-		GFF4391	0.74	-1.3
4,393,108	-		GFF4391	0.74	+0.8
4,393,108	-		GFF4391	0.74	+0.0
4,393,108	-		GFF4391	0.74	-1.4
4,393,108	-		GFF4391	0.74	+0.8
4,393,108	-		GFF4391	0.74	-1.4
4,393,108	-		GFF4391	0.74	-1.7
4,393,108	-		GFF4391	0.74	-1.6
4,393,108	-		GFF4391	0.74	-0.5
4,393,113	-		GFF4391	0.74	-0.6
4,393,113	-		GFF4391	0.74	+0.0
4,393,118	-		GFF4391	0.75	-0.1
4,393,120	+		GFF4391	0.75	+0.8
4,393,123	+		GFF4391	0.75	-0.6
4,393,141	+		GFF4391	0.76	+1.0
4,393,152	+		GFF4391	0.76	+0.1
4,393,152	+		GFF4391	0.76	-1.2
4,393,152	+		GFF4391	0.76	-0.6
4,393,152	+		GFF4391	0.76	-0.8
4,393,152	+		GFF4391	0.76	-0.7
4,393,152	+		GFF4391	0.76	-0.6
4,393,152	+		GFF4391	0.76	-0.1
4,393,152	+		GFF4391	0.76	-1.1
4,393,152	+		GFF4391	0.76	-2.0
4,393,152	+		GFF4391	0.76	-0.6
4,393,152	+		GFF4391	0.76	-0.6
4,393,152	+		GFF4391	0.76	+0.7
4,393,160	-		GFF4391	0.77	+0.6
4,393,160	-		GFF4391	0.77	-0.2
4,393,160	-		GFF4391	0.77	+1.4
4,393,160	-		GFF4391	0.77	-0.6
4,393,160	-		GFF4391	0.77	+1.1
4,393,160	-		GFF4391	0.77	-1.6
4,393,160	-		GFF4391	0.77	-0.9
4,393,163	+		GFF4391	0.77	-0.9
4,393,163	+		GFF4391	0.77	+0.1
4,393,163	+		GFF4391	0.77	-0.7
4,393,171	-		GFF4391	0.77	-0.8
4,393,171	-		GFF4391	0.77	-0.4
4,393,171	-		GFF4391	0.77	-0.1
4,393,171	-		GFF4391	0.77	-1.3
4,393,179	-		GFF4391	0.77	-1.7
4,393,181	-		GFF4391	0.78	-1.8
4,393,200	+		GFF4391	0.78	-0.1
4,393,215	+		GFF4391	0.79	-1.7
4,393,220	-		GFF4391	0.79	-0.6
4,393,223	-		GFF4391	0.79	-1.0
4,393,223	-		GFF4391	0.79	+0.3
4,393,230	+		GFF4391	0.80	-1.2
4,393,230	+		GFF4391	0.80	-0.7
4,393,233	+		GFF4391	0.80	-2.4
4,393,236	-		GFF4391	0.80	-1.5
4,393,238	-		GFF4391	0.80	+0.2
4,393,245	+		GFF4391	0.81	-0.8
4,393,290	+		GFF4391	0.83	-1.1
4,393,290	+		GFF4391	0.83	-0.5
4,393,290	+		GFF4391	0.83	+1.9
4,393,299	+		GFF4391	0.83	-2.1
4,393,302	-		GFF4391	0.83	+0.0
4,393,307	-		GFF4391	0.83	-1.4
4,393,307	-		GFF4391	0.83	-2.3
4,393,350	+		GFF4391	0.85	-2.1
4,393,367	-		GFF4391	0.86	-1.6
4,393,371	+		GFF4391	0.86	-0.7
4,393,379	-		GFF4391	0.87	-1.8
4,393,379	-		GFF4391	0.87	+0.0
4,393,380	+		GFF4391	0.87	-0.7
4,393,385	+		GFF4391	0.87	-0.9
4,393,387	-		GFF4391	0.87	+0.4
4,393,395	-		GFF4391	0.88	-1.3
4,393,425	+		GFF4391	0.89	+0.7
4,393,453	+				-1.7
4,393,453	+				-0.9
4,393,453	+				-0.1
4,393,453	+				-0.6
4,393,453	+				-1.3
4,393,453	+				+0.3
4,393,453	+				-0.2
4,393,453	+				-2.0
4,393,453	+				-0.7
4,393,461	-				-0.6
4,393,461	-				-0.4
4,393,461	-				-1.3
4,393,461	-				+0.7
4,393,461	-				-0.9
4,393,493	-				-0.2
4,393,509	-				-1.3
4,393,509	-				+0.2
4,393,527	+				-1.5
4,393,550	+				-0.6
4,393,589	+				-0.8
4,393,589	+				-0.9
4,393,589	+				-0.7
4,393,592	-				+0.3
4,393,596	+				-1.2
4,393,596	+				-0.0
4,393,596	+				+0.6
4,393,596	+				-0.1
4,393,596	+				-0.1
4,393,597	-				-0.7
4,393,597	-				-2.1
4,393,597	-				-1.0
4,393,597	-				+0.7
4,393,604	-				-0.9
4,393,604	-				-0.1
4,393,604	-				-1.2
4,393,608	+				-0.8
4,393,608	+				-1.5
4,393,608	+				+0.7
4,393,608	+				+0.1
4,393,608	+				+0.4
4,393,616	-				+0.2
4,393,616	-				-2.0
4,393,616	-				+0.1
4,393,629	+				-0.2
4,393,629	+				-0.5
4,393,632	+				+0.9
4,393,634	+				-1.6
4,393,637	-				+0.4
4,393,642	-				+0.6
4,393,662	+				-1.4
4,393,662	+				-0.6
4,393,662	+				+0.7
4,393,667	+				-0.7
4,393,669	+				-0.9
4,393,670	-				+0.1
4,393,677	-				-1.6
4,393,692	-				-0.6
4,393,693	+				-0.6
4,393,701	-				-0.9
4,393,707	+				-3.6
4,393,707	+				+0.5
4,393,714	+				+0.0
4,393,715	-				+1.9
4,393,759	+				-0.9
4,393,759	-				-1.5
4,393,759	-				-1.7
4,393,817	+				-1.5
4,393,817	+				-1.1
4,393,817	+				-0.9
4,393,817	+				+1.3
4,393,817	+				+1.0
4,393,817	+				-1.8
4,393,817	+				-1.0
4,393,817	+				+0.3
4,393,817	+				-0.2
4,393,817	+				-0.6
4,393,817	+				+0.3
4,393,817	+				-0.3
4,393,817	+				-0.5
4,393,817	+				+0.6
4,393,817	+				-0.1
4,393,817	+				-0.3
4,393,825	-				+0.2
4,393,825	-				+0.5
4,393,825	-				+0.3
4,393,825	-				-1.6
4,393,825	-				-0.7
4,393,825	-				+0.0
4,393,825	-				-1.4
4,393,825	-				-1.9
4,393,825	-				-1.4
4,393,825	-				-0.1
4,393,825	-				+0.1
4,393,825	-				-1.3
4,393,825	-				-2.1
4,393,825	-				+0.4
4,393,827	+				-0.9
4,393,827	+				+0.1
4,393,835	-				-0.8
4,393,835	-				+0.7
4,393,870	-				+0.7
4,393,874	-				-0.6
4,393,885	+				-0.7
4,393,891	-				-1.7
4,393,891	-				-1.2
4,393,891	-				-0.3
4,393,891	-				-0.7
4,393,893	+				-0.9
4,393,895	+				-1.0
4,393,901	-				-1.1
4,393,928	-				-1.0
4,393,945	-				-1.4
4,393,946	+				-2.5
4,393,997	-		GFF4392	0.17	-1.3
4,394,002	-		GFF4392	0.18	+0.1
4,394,009	+		GFF4392	0.19	-1.3
4,394,009	+		GFF4392	0.19	-0.9
4,394,009	+		GFF4392	0.19	-0.3
4,394,009	+		GFF4392	0.19	-1.5
4,394,009	+		GFF4392	0.19	-0.9
4,394,009	+		GFF4392	0.19	+0.7
4,394,011	+		GFF4392	0.19	+0.7
4,394,011	+		GFF4392	0.19	+0.5
4,394,011	+		GFF4392	0.19	-1.3
4,394,011	+		GFF4392	0.19	-1.2
4,394,011	+		GFF4392	0.19	-1.4
4,394,011	+		GFF4392	0.19	+0.7
4,394,011	+		GFF4392	0.19	-1.1
4,394,011	+		GFF4392	0.19	-0.5
4,394,016	+		GFF4392	0.20	-1.0
4,394,016	+		GFF4392	0.20	+0.0
4,394,017	-		GFF4392	0.21	-1.1
4,394,017	-		GFF4392	0.21	-0.7
4,394,017	-		GFF4392	0.21	-0.9
4,394,017	-		GFF4392	0.21	-2.9
4,394,017	-		GFF4392	0.21	-1.1
4,394,017	-		GFF4392	0.21	+0.3
4,394,017	-		GFF4392	0.21	-0.7
4,394,019	-		GFF4392	0.21	-1.3
4,394,019	-		GFF4392	0.21	-0.6
4,394,019	-		GFF4392	0.21	-0.9
4,394,021	+		GFF4392	0.21	+1.0
4,394,021	+		GFF4392	0.21	+1.3
4,394,021	+		GFF4392	0.21	-1.7
4,394,021	+		GFF4392	0.21	-3.3
4,394,021	+		GFF4392	0.21	-0.7
4,394,021	+		GFF4392	0.21	-1.1
4,394,021	+		GFF4392	0.21	-0.3
4,394,021	+		GFF4392	0.21	+0.1
4,394,021	+		GFF4392	0.21	-2.2
4,394,021	+		GFF4392	0.21	-1.3
4,394,021	+		GFF4392	0.21	-1.2
4,394,021	+		GFF4392	0.21	-2.6
4,394,021	+		GFF4392	0.21	-1.7
4,394,021	+		GFF4392	0.21	-1.3
4,394,021	+		GFF4392	0.21	+0.3
4,394,021	+		GFF4392	0.21	+0.2
4,394,021	+		GFF4392	0.21	-1.2
4,394,021	+		GFF4392	0.21	-0.9
4,394,021	+		GFF4392	0.21	-0.6
4,394,021	+		GFF4392	0.21	-1.0
4,394,021	+		GFF4392	0.21	-0.3
4,394,021	+		GFF4392	0.21	-0.2
4,394,021	+		GFF4392	0.21	+0.4
4,394,021	+		GFF4392	0.21	-0.2
4,394,021	+		GFF4392	0.21	-0.6
4,394,021	+		GFF4392	0.21	-0.9
4,394,021	+		GFF4392	0.21	-1.1
4,394,021	+		GFF4392	0.21	-1.0
4,394,021	+		GFF4392	0.21	+1.7
4,394,021	+		GFF4392	0.21	+0.3
4,394,021	+		GFF4392	0.21	+0.3
4,394,021	+		GFF4392	0.21	-0.6
4,394,021	+		GFF4392	0.21	+0.0
4,394,021	+		GFF4392	0.21	-1.0
4,394,021	+		GFF4392	0.21	+0.7
4,394,029	-		GFF4392	0.23	-0.5
4,394,029	-		GFF4392	0.23	-1.2
4,394,029	-		GFF4392	0.23	-0.3
4,394,029	-		GFF4392	0.23	-0.3
4,394,029	-		GFF4392	0.23	-0.9
4,394,029	-		GFF4392	0.23	-1.0
4,394,029	-		GFF4392	0.23	-1.3
4,394,029	-		GFF4392	0.23	+0.1
4,394,029	-		GFF4392	0.23	-1.7
4,394,029	-		GFF4392	0.23	-0.1
4,394,029	-		GFF4392	0.23	-0.2
4,394,029	-		GFF4392	0.23	+1.8
4,394,029	-		GFF4392	0.23	+0.5
4,394,029	-		GFF4392	0.23	+0.3
4,394,029	-		GFF4392	0.23	-1.4
4,394,029	-		GFF4392	0.23	-1.7
4,394,029	-		GFF4392	0.23	-1.2
4,394,029	-		GFF4392	0.23	+0.4
4,394,029	-		GFF4392	0.23	+0.3
4,394,029	-		GFF4392	0.23	+0.1
4,394,029	-		GFF4392	0.23	-1.7
4,394,029	-		GFF4392	0.23	-0.7
4,394,029	-		GFF4392	0.23	-0.9
4,394,029	-		GFF4392	0.23	+1.2
4,394,029	-		GFF4392	0.23	+0.4
4,394,029	-		GFF4392	0.23	-0.7
4,394,029	-		GFF4392	0.23	+0.7
4,394,029	-		GFF4392	0.23	-1.6
4,394,029	-		GFF4392	0.23	-2.2
4,394,029	-		GFF4392	0.23	-1.8
4,394,029	-		GFF4392	0.23	-1.2
4,394,029	-		GFF4392	0.23	+0.9
4,394,029	-		GFF4392	0.23	-0.3
4,394,029	-		GFF4392	0.23	-2.1
4,394,029	-		GFF4392	0.23	-0.6
4,394,029	-		GFF4392	0.23	-0.5
4,394,029	-		GFF4392	0.23	-1.4
4,394,029	-		GFF4392	0.23	-0.9
4,394,029	-		GFF4392	0.23	-1.0
4,394,029	-		GFF4392	0.23	-1.9
4,394,029	-		GFF4392	0.23	-1.1
4,394,048	+		GFF4392	0.27	-1.3
4,394,056	+		GFF4392	0.29	-1.6
4,394,070	-		GFF4392	0.31	-1.8
4,394,070	-		GFF4392	0.31	-0.6
4,394,070	-		GFF4392	0.31	-0.9
4,394,074	-		GFF4392	0.32	-2.1
4,394,074	-		GFF4392	0.32	-1.1
4,394,074	-		GFF4392	0.32	-0.7
4,394,075	-		GFF4392	0.32	-0.7
4,394,080	-		GFF4392	0.33	-1.7
4,394,099	+		GFF4392	0.37	-1.6
4,394,099	+		GFF4392	0.37	-0.7
4,394,104	+		GFF4392	0.38	-0.7
4,394,104	+		GFF4392	0.38	-2.8
4,394,107	-		GFF4392	0.39	-1.2
4,394,112	-		GFF4392	0.40	+1.2
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4,394,187	-		GFF4392	0.55	+0.1
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4,394,235	+		GFF4392	0.64	-2.1
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4,394,289	-		GFF4392	0.75	-1.2
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4,394,328	+		GFF4392	0.83	-2.8
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4,394,333	+		GFF4392	0.84	-1.1
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4,394,336	-		GFF4392	0.85	-1.9
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4,394,341	-		GFF4392	0.86	-1.1
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4,394,343	+		GFF4392	0.86	-0.6
4,394,343	+		GFF4392	0.86	-0.7
4,394,369	-				-0.1
4,394,369	-				-0.8
4,394,371	-				-1.3
4,394,371	-				+0.1
4,394,385	+				-0.9
4,394,393	-				-0.7
4,394,393	-				-0.9
4,394,393	-				+0.8
4,394,403	-				+0.1
4,394,419	+				+0.6
4,394,421	+				+0.3
4,394,427	-				-1.3
4,394,427	-				-0.0
4,394,434	+				-0.8
4,394,448	+				-1.9
4,394,449	+				-1.3
4,394,459	+				-1.0
4,394,476	+				-0.6
4,394,476	+				-0.9
4,394,476	+				-1.0
4,394,479	-				-1.3
4,394,484	-				-0.7
4,394,486	+				-0.0
4,394,494	-				+0.0
4,394,496	+				-0.8
4,394,501	+				-0.7
4,394,501	+				-1.0
4,394,501	+				-1.4
4,394,501	+				-0.6
4,394,501	+				-0.6
4,394,509	-				-0.3
4,394,509	-				-0.1
4,394,509	-				-0.3
4,394,509	-				-0.4
4,394,510	+				-1.7
4,394,510	+				+0.3
4,394,510	+				+0.5
4,394,515	+				-0.9
4,394,518	-				-0.3
4,394,518	-				-1.0
4,394,518	-				-0.9
4,394,518	-				-1.3
4,394,518	-				-2.3
4,394,518	-				-2.1
4,394,526	-				+0.4
4,394,534	-				-1.0
4,394,536	+				-1.8
4,394,581	+				-2.4
4,394,586	+				-1.4
4,394,593	+				-0.7
4,394,593	+				-0.7
4,394,597	+				-0.6
4,394,601	-				+0.4
4,394,605	-				-1.6
4,394,606	-				-0.9
4,394,615	+				-0.3
4,394,615	+				-0.9
4,394,616	+				-1.1
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4,394,624	-				-0.5
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4,394,661	-		GFF4393	0.12	-2.3
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4,394,690	+		GFF4393	0.15	-2.9
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4,394,771	+		GFF4393	0.21	-1.3
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