Strain Fitness in Sphingobium sp. HT1-2 around GFF4316

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,322,963	-		GFF4314	0.49	-1.1
4,322,994	+		GFF4314	0.53	+0.2
4,322,998	+		GFF4314	0.54	-1.0
4,322,998	+		GFF4314	0.54	-1.1
4,322,998	+		GFF4314	0.54	-0.6
4,323,000	-		GFF4314	0.54	+0.3
4,323,000	-		GFF4314	0.54	+0.9
4,323,006	+		GFF4314	0.54	-0.8
4,323,006	+		GFF4314	0.54	-0.1
4,323,006	-		GFF4314	0.54	-0.6
4,323,006	-		GFF4314	0.54	-0.9
4,323,007	-		GFF4314	0.55	+0.4
4,323,013	-		GFF4314	0.55	-0.9
4,323,015	-		GFF4314	0.56	-0.3
4,323,040	-		GFF4314	0.59	-0.7
4,323,044	+		GFF4314	0.59	+0.0
4,323,051	-		GFF4314	0.60	-1.1
4,323,057	-		GFF4314	0.61	-0.4
4,323,095	-		GFF4314	0.65	-1.0
4,323,122	+		GFF4314	0.69	-1.6
4,323,127	+		GFF4314	0.69	+0.4
4,323,127	+		GFF4314	0.69	-0.8
4,323,130	-		GFF4314	0.70	+0.2
4,323,132	+		GFF4314	0.70	-2.1
4,323,139	+		GFF4314	0.71	+0.6
4,323,159	+		GFF4314	0.73	-1.2
4,323,159	-		GFF4314	0.73	-0.0
4,323,160	+		GFF4314	0.73	-0.6
4,323,164	+		GFF4314	0.74	-0.2
4,323,164	+		GFF4314	0.74	-0.2
4,323,172	-		GFF4314	0.75	+0.1
4,323,172	-		GFF4314	0.75	+0.6
4,323,174	+		GFF4314	0.75	-0.5
4,323,180	+		GFF4314	0.76	-1.6
4,323,187	+		GFF4314	0.77	+0.5
4,323,195	+		GFF4314	0.78	-0.8
4,323,195	-		GFF4314	0.78	-1.4
4,323,212	+		GFF4314	0.80	-1.3
4,323,212	+		GFF4314	0.80	+1.3
4,323,212	+		GFF4314	0.80	+0.7
4,323,220	-		GFF4314	0.81	+1.0
4,323,220	-		GFF4314	0.81	+0.1
4,323,220	-		GFF4314	0.81	+0.1
4,323,220	-		GFF4314	0.81	-1.3
4,323,220	-		GFF4314	0.81	-2.3
4,323,220	-		GFF4314	0.81	+0.2
4,323,227	-		GFF4314	0.82	-0.9
4,323,247	+		GFF4314	0.84	-0.8
4,323,247	+		GFF4314	0.84	-0.8
4,323,255	-		GFF4314	0.85	-1.2
4,323,264	+		GFF4314	0.86	-1.1
4,323,264	+		GFF4314	0.86	+0.6
4,323,269	+		GFF4314	0.87	-0.2
4,323,272	-		GFF4314	0.87	-0.6
4,323,277	-		GFF4314	0.88	-1.5
4,323,280	+		GFF4314	0.88	-0.6
4,323,280	+		GFF4314	0.88	+1.6
4,323,280	+		GFF4314	0.88	-0.6
4,323,287	-		GFF4314	0.89	-0.9
4,323,288	-		GFF4314	0.89	-1.0
4,323,295	+				-1.9
4,323,301	+				-0.8
4,323,309	-				+1.6
4,323,309	-				-1.3
4,323,309	-				+0.5
4,323,318	+				-0.6
4,323,318	+				-1.4
4,323,318	+				-0.9
4,323,333	-				+0.1
4,323,341	+				-2.2
4,323,341	+				-1.1
4,323,349	-				-0.6
4,323,349	-				-0.3
4,323,349	-				-0.6
4,323,349	-				+0.4
4,323,349	-				-0.8
4,323,349	-				-0.8
4,323,349	-				-0.6
4,323,349	-				-1.1
4,323,351	+				-0.6
4,323,351	+				-0.4
4,323,351	+				-0.6
4,323,351	+				-0.6
4,323,351	+				-1.4
4,323,351	+				-0.2
4,323,359	-				+0.3
4,323,359	-				-2.3
4,323,359	-				-1.4
4,323,359	-				-1.0
4,323,364	-				+0.1
4,323,374	-				-0.8
4,323,402	-				+0.8
4,323,430	-				-2.1
4,323,437	+		GFF4315	0.11	-0.3
4,323,438	-		GFF4315	0.11	+1.0
4,323,438	-		GFF4315	0.11	-0.5
4,323,438	-		GFF4315	0.11	+0.3
4,323,438	-		GFF4315	0.11	-1.1
4,323,445	-		GFF4315	0.12	-1.2
4,323,449	+		GFF4315	0.13	-0.6
4,323,457	-		GFF4315	0.15	-0.5
4,323,485	-		GFF4315	0.19	-0.9
4,323,486	-		GFF4315	0.19	-1.6
4,323,493	+		GFF4315	0.21	+0.1
4,323,497	+		GFF4315	0.21	-0.9
4,323,500	+		GFF4315	0.22	-0.6
4,323,500	+		GFF4315	0.22	-0.7
4,323,501	-		GFF4315	0.22	-1.5
4,323,507	+		GFF4315	0.23	-1.5
4,323,508	-		GFF4315	0.23	-0.7
4,323,508	-		GFF4315	0.23	+0.5
4,323,514	+		GFF4315	0.24	-0.7
4,323,516	+		GFF4315	0.25	-2.0
4,323,517	+		GFF4315	0.25	+0.6
4,323,522	-		GFF4315	0.26	-0.8
4,323,522	-		GFF4315	0.26	-2.2
4,323,522	-		GFF4315	0.26	-1.0
4,323,524	-		GFF4315	0.26	+0.5
4,323,536	+		GFF4315	0.28	-1.1
4,323,536	+		GFF4315	0.28	-0.3
4,323,536	+		GFF4315	0.28	-1.0
4,323,536	+		GFF4315	0.28	-0.6
4,323,543	+		GFF4315	0.29	-1.5
4,323,544	+		GFF4315	0.29	-0.4
4,323,544	-		GFF4315	0.29	+0.3
4,323,544	-		GFF4315	0.29	+0.3
4,323,544	-		GFF4315	0.29	-1.7
4,323,546	-		GFF4315	0.30	-0.3
4,323,557	+		GFF4315	0.32	-1.7
4,323,562	+		GFF4315	0.32	+0.0
4,323,564	-		GFF4315	0.33	+0.4
4,323,571	-		GFF4315	0.34	-1.2
4,323,576	-		GFF4315	0.35	-0.5
4,323,588	-		GFF4315	0.37	-1.2
4,323,598	-		GFF4315	0.39	-0.6
4,323,604	-		GFF4315	0.40	-0.5
4,323,604	-		GFF4315	0.40	-0.1
4,323,647	+		GFF4315	0.47	-1.3
4,323,663	-		GFF4315	0.50	-1.9
4,323,672	+		GFF4315	0.51	-1.3
4,323,672	+		GFF4315	0.51	-1.5
4,323,677	+		GFF4315	0.52	+0.3
4,323,683	+		GFF4315	0.53	-2.8
4,323,683	+		GFF4315	0.53	-0.7
4,323,691	-		GFF4315	0.55	-0.7
4,323,691	-		GFF4315	0.55	-2.0
4,323,717	+		GFF4315	0.59	-0.8
4,323,724	-		GFF4315	0.60	-1.0
4,323,725	-		GFF4315	0.60	-2.1
4,323,725	-		GFF4315	0.60	-1.5
4,323,729	-		GFF4315	0.61	+0.4
4,323,739	-		GFF4315	0.63	+0.6
4,323,761	+		GFF4315	0.66	-0.3
4,323,778	+		GFF4315	0.69	-0.6
4,323,778	+		GFF4315	0.69	+0.4
4,323,778	+		GFF4315	0.69	+0.3
4,323,778	+		GFF4315	0.69	-1.2
4,323,783	+		GFF4315	0.70	-0.7
4,323,786	-		GFF4315	0.71	+0.4
4,323,786	-		GFF4315	0.71	-1.5
4,323,786	-		GFF4315	0.71	-0.8
4,323,786	-		GFF4315	0.71	-0.6
4,323,788	+		GFF4315	0.71	+1.3
4,323,788	+		GFF4315	0.71	-0.1
4,323,789	+		GFF4315	0.71	+0.3
4,323,789	+		GFF4315	0.71	-0.6
4,323,789	+		GFF4315	0.71	-1.6
4,323,789	+		GFF4315	0.71	-1.7
4,323,789	+		GFF4315	0.71	-0.3
4,323,789	+		GFF4315	0.71	-1.7
4,323,789	+		GFF4315	0.71	-1.2
4,323,791	+		GFF4315	0.72	-2.1
4,323,794	-		GFF4315	0.72	-0.6
4,323,797	-		GFF4315	0.73	-0.3
4,323,797	-		GFF4315	0.73	+0.0
4,323,820	-		GFF4315	0.77	-2.9
4,323,859	-		GFF4315	0.83	+0.2
4,323,892	+		GFF4315	0.89	+0.5
4,323,894	+		GFF4315	0.89	-1.0
4,323,895	-		GFF4315	0.89	-2.1
4,323,909	-				-1.9
4,323,909	-				-0.5
4,323,911	+				-0.6
4,323,911	+				-0.8
4,323,911	+				+0.1
4,323,919	-				-0.2
4,323,919	-				-1.2
4,323,930	-				-0.1
4,323,930	-				-0.8
4,323,932	+				+0.2
4,323,932	+				-1.4
4,323,946	+				+0.6
4,323,978	+				-1.7
4,323,978	+				-0.2
4,323,978	+				-2.2
4,323,978	+				+0.5
4,323,978	+				-0.6
4,323,985	+				+0.1
4,323,986	+				+0.4
4,323,986	-				-1.3
4,323,986	-				-0.8
4,323,986	-				+0.7
4,323,986	-				-1.1
4,323,986	-				+1.2
4,323,986	-				+0.4
4,323,986	-				-0.7
4,323,986	-				+0.6
4,323,986	-				-0.3
4,323,986	-				-0.5
4,323,986	-				-0.6
4,323,986	-				-2.3
4,323,993	-		GFF4316	0.12	-0.2
4,323,993	-		GFF4316	0.12	-0.6
4,323,995	+		GFF4316	0.13	-1.7
4,324,003	-		GFF4316	0.16	+0.3
4,324,004	-		GFF4316	0.16	-1.7
4,324,027	+		GFF4316	0.24	-1.5
4,324,036	-		GFF4316	0.27	+0.3
4,324,042	-		GFF4316	0.29	-1.1
4,324,067	+		GFF4316	0.38	-1.5
4,324,085	-		GFF4316	0.45	-0.7
4,324,115	-		GFF4316	0.55	-1.4
4,324,121	+		GFF4316	0.57	-1.4
4,324,131	+		GFF4316	0.61	+0.4
4,324,142	+		GFF4316	0.65	-2.0
4,324,142	+		GFF4316	0.65	-0.6
4,324,147	+		GFF4316	0.66	-0.7
4,324,174	-		GFF4316	0.76	-0.2
4,324,184	-		GFF4316	0.79	+0.5
4,324,193	-		GFF4316	0.82	-0.0
4,324,200	+		GFF4316	0.85	+0.1
4,324,200	+		GFF4316	0.85	+0.3
4,324,200	+		GFF4316	0.85	+0.1
4,324,200	+		GFF4316	0.85	-1.1
4,324,200	+		GFF4316	0.85	-1.7
4,324,200	+		GFF4316	0.85	-0.7
4,324,200	+		GFF4316	0.85	-0.4
4,324,200	+		GFF4316	0.85	-0.1
4,324,200	+		GFF4316	0.85	-1.9
4,324,208	-		GFF4316	0.88	-0.4
4,324,208	-		GFF4316	0.88	-0.1
4,324,208	-		GFF4316	0.88	-0.6
4,324,208	-		GFF4316	0.88	+0.9
4,324,208	-		GFF4316	0.88	+0.2
4,324,208	-		GFF4316	0.88	-0.9
4,324,218	-				-1.2
4,324,223	+				-0.3
4,324,227	+				-1.6
4,324,227	+				-0.5
4,324,227	+				-1.5
4,324,228	+				-0.3
4,324,229	+				-1.2
4,324,235	-				-1.5
4,324,235	-				-2.0
4,324,235	-				-1.3
4,324,237	+				-2.4
4,324,237	+				-2.5
4,324,237	+				+0.4
4,324,237	+				-0.3
4,324,237	-				-0.6
4,324,245	-				-0.7
4,324,245	-				+0.3
4,324,245	-				-0.9
4,324,245	-				-2.1
4,324,245	-				-0.3
4,324,245	-				+0.2
4,324,256	-				+0.1
4,324,259	+				-0.2
4,324,270	+				-1.4
4,324,282	+				-0.6
4,324,288	-				-1.4
4,324,290	-				-1.2
4,324,290	-				-0.0
4,324,301	+				-1.1
4,324,342	-		GFF4317	0.18	+0.5
4,324,354	+		GFF4317	0.22	-0.3
4,324,367	+		GFF4317	0.26	-0.9
4,324,367	+		GFF4317	0.26	-0.1
4,324,380	-		GFF4317	0.30	-0.6
4,324,380	-		GFF4317	0.30	-0.7
4,324,381	-		GFF4317	0.30	-1.5
4,324,384	+		GFF4317	0.31	-0.9
4,324,423	-		GFF4317	0.43	-1.3
4,324,424	-		GFF4317	0.43	-0.8
4,324,426	+		GFF4317	0.44	-1.0
4,324,426	+		GFF4317	0.44	-0.4
4,324,434	-		GFF4317	0.46	+0.4
4,324,434	-		GFF4317	0.46	-0.9
4,324,434	-		GFF4317	0.46	-0.7
4,324,459	+		GFF4317	0.54	-1.1
4,324,459	+		GFF4317	0.54	-0.7
4,324,467	-		GFF4317	0.56	+0.5
4,324,480	+		GFF4317	0.60	-0.7
4,324,527	-		GFF4317	0.75	-0.3
4,324,539	+		GFF4317	0.79	+0.5
4,324,547	-		GFF4317	0.81	-0.4
4,324,547	-		GFF4317	0.81	-1.0
4,324,553	+		GFF4317	0.83	-0.8
4,324,554	+		GFF4317	0.83	-0.0
4,324,554	+		GFF4317	0.83	-0.5
4,324,554	+		GFF4317	0.83	-1.0
4,324,554	+		GFF4317	0.83	+0.8
4,324,559	+		GFF4317	0.85	+0.7
4,324,562	+		GFF4317	0.86	-0.8
4,324,562	+		GFF4317	0.86	+0.2
4,324,562	-		GFF4317	0.86	+1.5
4,324,567	+		GFF4317	0.87	-1.2
4,324,567	+		GFF4317	0.87	-1.0
4,324,567	+		GFF4317	0.87	-2.7
4,324,567	-		GFF4317	0.87	-1.7
4,324,570	-		GFF4317	0.88	-0.2
4,324,570	-		GFF4317	0.88	-0.3
4,324,575	-				-1.1
4,324,582	+				-0.5
4,324,585	-				-0.8
4,324,590	-				-1.9
4,324,601	+				-0.6
4,324,603	+				-1.9
4,324,603	+				-0.0
4,324,611	-				-0.8
4,324,629	+				-1.2
4,324,656	-				+1.0
4,324,658	+				-0.2
4,324,672	-				+0.3
4,324,736	-				-1.1
4,324,757	-				-0.6
4,324,767	-				-1.5
4,324,769	-				-1.0
4,324,820	+				-0.8
4,324,828	-				-1.5
4,324,835	+				-0.6
4,324,887	-				+0.2
4,324,934	-				-1.6
4,324,943	+				+0.1
4,324,943	+				+0.1
4,324,944	+				-1.3
4,324,945	+				-0.9
4,324,950	+				-0.6
4,324,952	+				+0.4
4,324,953	+				-1.6
4,324,953	+				-0.9
4,324,953	+				-0.6
4,324,953	+				-0.8
4,324,953	+				-0.6
4,324,953	+				-2.1
4,324,953	+				+0.6
4,324,953	+				+0.4
4,324,953	+				+0.3
4,324,958	-				-1.0
4,324,958	-				-1.5
4,324,958	-				+0.5
4,324,960	-				+0.2
4,324,961	-				-1.4
4,324,961	-				+1.3
4,324,961	-				-0.2
4,324,961	-				-1.4
4,324,961	-				-1.4
4,324,961	-				-1.2
4,324,961	-				+1.6
4,324,961	-				-0.2
4,324,961	-				-1.1
4,324,961	-				-0.4
4,324,996	-		GFF4318	0.29	-0.5
4,324,999	+		GFF4318	0.31	-0.8
4,325,010	+		GFF4318	0.38	+0.8
4,325,026	-		GFF4318	0.49	-1.2
4,325,055	+		GFF4318	0.68	-1.0
4,325,055	+		GFF4318	0.68	-1.4
4,325,055	+		GFF4318	0.68	+0.3
4,325,055	+		GFF4318	0.68	+0.5
4,325,055	+		GFF4318	0.68	-0.8
4,325,063	-		GFF4318	0.73	+0.7
4,325,063	-		GFF4318	0.73	-0.8
4,325,063	-		GFF4318	0.73	-0.6
4,325,063	-		GFF4318	0.73	-1.7
4,325,063	-		GFF4318	0.73	-0.7
4,325,063	-		GFF4318	0.73	+0.2
4,325,063	-		GFF4318	0.73	-1.3
4,325,063	-		GFF4318	0.73	+0.2
4,325,113	+				-1.4
4,325,136	+				-1.3
4,325,144	-				-0.4
4,325,144	-				-0.8
4,325,144	-				+1.8
4,325,144	-				-3.3
4,325,146	+				+1.2
4,325,146	+				+1.7
4,325,149	-				-1.3
4,325,158	+				-0.6
4,325,158	+				+0.3
4,325,158	+				-0.9
4,325,158	+				+0.9
4,325,191	-				-0.9
4,325,214	-				-1.0
4,325,229	-				-1.0