Strain Fitness in Sphingobium sp. HT1-2 around GFF4303

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,311,725	-		GFF4302	0.53	-0.3
4,311,761	+		GFF4302	0.55	-0.9
4,311,761	+		GFF4302	0.55	+0.6
4,311,761	+		GFF4302	0.55	-0.7
4,311,769	-		GFF4302	0.55	-1.2
4,311,769	-		GFF4302	0.55	+0.0
4,311,769	-		GFF4302	0.55	-0.5
4,311,793	+		GFF4302	0.56	+0.4
4,311,806	+		GFF4302	0.57	-1.2
4,311,825	+		GFF4302	0.58	-0.7
4,311,833	-		GFF4302	0.58	-1.7
4,311,838	-		GFF4302	0.58	-0.3
4,311,840	+		GFF4302	0.58	+0.9
4,311,845	+		GFF4302	0.59	-0.9
4,311,845	+		GFF4302	0.59	-1.8
4,311,850	-		GFF4302	0.59	-2.4
4,311,853	-		GFF4302	0.59	+0.1
4,311,853	-		GFF4302	0.59	-0.1
4,311,891	+		GFF4302	0.61	+0.6
4,311,899	-		GFF4302	0.61	+0.3
4,311,903	-		GFF4302	0.61	-0.8
4,311,921	+		GFF4302	0.62	-1.0
4,311,923	+		GFF4302	0.62	+1.0
4,311,929	-		GFF4302	0.63	-2.5
4,311,931	-		GFF4302	0.63	+0.7
4,311,936	+		GFF4302	0.63	-0.2
4,311,938	+		GFF4302	0.63	-1.1
4,311,938	+		GFF4302	0.63	-0.1
4,311,938	+		GFF4302	0.63	-1.0
4,311,938	+		GFF4302	0.63	-0.8
4,311,938	+		GFF4302	0.63	-1.4
4,311,944	-		GFF4302	0.63	+0.8
4,311,946	+		GFF4302	0.63	-1.3
4,311,946	-		GFF4302	0.63	-1.7
4,311,946	-		GFF4302	0.63	-0.3
4,311,946	-		GFF4302	0.63	+0.8
4,311,946	-		GFF4302	0.63	+1.4
4,311,946	-		GFF4302	0.63	-2.3
4,311,965	+		GFF4302	0.64	-1.0
4,311,965	+		GFF4302	0.64	-0.7
4,311,966	-		GFF4302	0.64	-1.4
4,311,966	-		GFF4302	0.64	-0.8
4,311,973	-		GFF4302	0.65	+0.8
4,311,973	-		GFF4302	0.65	+0.7
4,311,987	-		GFF4302	0.65	+1.3
4,311,990	+		GFF4302	0.66	-0.6
4,311,990	+		GFF4302	0.66	-1.1
4,311,990	+		GFF4302	0.66	-1.8
4,311,990	+		GFF4302	0.66	+0.6
4,311,990	+		GFF4302	0.66	+0.9
4,311,990	+		GFF4302	0.66	-0.8
4,311,993	+		GFF4302	0.66	+0.6
4,311,998	-		GFF4302	0.66	-0.4
4,311,998	-		GFF4302	0.66	-1.4
4,311,998	-		GFF4302	0.66	-1.7
4,311,998	-		GFF4302	0.66	-1.2
4,312,002	+		GFF4302	0.66	-0.6
4,312,002	-		GFF4302	0.66	-0.5
4,312,011	+		GFF4302	0.67	-2.0
4,312,012	+		GFF4302	0.67	-2.6
4,312,013	+		GFF4302	0.67	-0.3
4,312,021	-		GFF4302	0.67	-0.1
4,312,024	-		GFF4302	0.67	+1.0
4,312,026	+		GFF4302	0.67	-2.3
4,312,034	-		GFF4302	0.68	-2.6
4,312,034	-		GFF4302	0.68	-0.7
4,312,036	+		GFF4302	0.68	-1.7
4,312,044	-		GFF4302	0.68	-3.1
4,312,044	-		GFF4302	0.68	-0.9
4,312,057	-		GFF4302	0.69	-0.9
4,312,073	+		GFF4302	0.70	-0.0
4,312,075	+		GFF4302	0.70	+0.4
4,312,081	-		GFF4302	0.70	-1.2
4,312,081	-		GFF4302	0.70	-2.0
4,312,081	-		GFF4302	0.70	-0.5
4,312,081	-		GFF4302	0.70	+0.0
4,312,083	-		GFF4302	0.70	-0.8
4,312,083	-		GFF4302	0.70	+0.9
4,312,083	-		GFF4302	0.70	-0.1
4,312,111	-		GFF4302	0.71	+0.9
4,312,115	+		GFF4302	0.72	-0.2
4,312,125	+		GFF4302	0.72	+0.9
4,312,127	-		GFF4302	0.72	-1.5
4,312,127	-		GFF4302	0.72	+0.6
4,312,130	+		GFF4302	0.72	-1.0
4,312,130	+		GFF4302	0.72	+1.0
4,312,130	+		GFF4302	0.72	-0.6
4,312,138	-		GFF4302	0.73	-0.8
4,312,138	-		GFF4302	0.73	-0.7
4,312,139	-		GFF4302	0.73	+0.3
4,312,139	-		GFF4302	0.73	-1.0
4,312,154	+		GFF4302	0.73	+1.3
4,312,162	-		GFF4302	0.74	-0.3
4,312,169	+		GFF4302	0.74	-0.4
4,312,171	+		GFF4302	0.74	-0.6
4,312,171	+		GFF4302	0.74	+0.0
4,312,171	+		GFF4302	0.74	-1.6
4,312,171	+		GFF4302	0.74	-0.7
4,312,171	+		GFF4302	0.74	-1.3
4,312,171	+		GFF4302	0.74	-0.6
4,312,171	+		GFF4302	0.74	+0.7
4,312,177	-		GFF4302	0.74	-1.4
4,312,177	-		GFF4302	0.74	-2.5
4,312,179	-		GFF4302	0.75	-1.5
4,312,179	-		GFF4302	0.75	-2.1
4,312,179	-		GFF4302	0.75	-1.7
4,312,216	-		GFF4302	0.76	-1.6
4,312,218	+		GFF4302	0.76	-1.5
4,312,223	+		GFF4302	0.77	-1.3
4,312,223	+		GFF4302	0.77	+0.7
4,312,223	+		GFF4302	0.77	+0.9
4,312,223	+		GFF4302	0.77	-0.2
4,312,223	+		GFF4302	0.77	-0.3
4,312,223	+		GFF4302	0.77	-0.7
4,312,223	+		GFF4302	0.77	+1.0
4,312,223	+		GFF4302	0.77	-0.8
4,312,223	+		GFF4302	0.77	-2.2
4,312,223	+		GFF4302	0.77	-1.1
4,312,228	+		GFF4302	0.77	-1.4
4,312,231	-		GFF4302	0.77	+0.0
4,312,231	-		GFF4302	0.77	-0.5
4,312,231	-		GFF4302	0.77	-0.8
4,312,231	-		GFF4302	0.77	-1.1
4,312,231	-		GFF4302	0.77	+0.6
4,312,236	-		GFF4302	0.77	-1.9
4,312,270	+		GFF4302	0.79	-0.8
4,312,271	-		GFF4302	0.79	+0.4
4,312,278	+		GFF4302	0.79	-1.3
4,312,278	-		GFF4302	0.79	-0.5
4,312,286	-		GFF4302	0.80	-1.2
4,312,286	-		GFF4302	0.80	-1.8
4,312,286	-		GFF4302	0.80	-0.9
4,312,293	+		GFF4302	0.80	-0.5
4,312,314	-		GFF4302	0.81	-1.4
4,312,328	+		GFF4302	0.82	-0.1
4,312,328	+		GFF4302	0.82	-1.1
4,312,328	+		GFF4302	0.82	+0.7
4,312,328	+		GFF4302	0.82	-1.5
4,312,336	-		GFF4302	0.82	-1.1
4,312,336	-		GFF4302	0.82	-0.1
4,312,336	-		GFF4302	0.82	-0.4
4,312,336	-		GFF4302	0.82	-2.0
4,312,336	-		GFF4302	0.82	-0.6
4,312,336	-		GFF4302	0.82	-2.0
4,312,336	-		GFF4302	0.82	-1.5
4,312,336	-		GFF4302	0.82	+0.2
4,312,341	-		GFF4302	0.82	-0.3
4,312,372	+		GFF4302	0.84	-1.8
4,312,373	+		GFF4302	0.84	-2.0
4,312,373	+		GFF4302	0.84	-0.7
4,312,373	+		GFF4302	0.84	-0.3
4,312,373	+		GFF4302	0.84	+1.0
4,312,373	+		GFF4302	0.84	+0.4
4,312,378	+		GFF4302	0.84	-1.9
4,312,381	-		GFF4302	0.84	+0.3
4,312,381	-		GFF4302	0.84	-1.4
4,312,381	-		GFF4302	0.84	+0.1
4,312,381	-		GFF4302	0.84	-1.4
4,312,381	-		GFF4302	0.84	+0.1
4,312,381	-		GFF4302	0.84	-0.1
4,312,381	-		GFF4302	0.84	+1.0
4,312,395	+		GFF4302	0.85	+0.9
4,312,397	-		GFF4302	0.85	-1.2
4,312,399	-		GFF4302	0.85	-0.1
4,312,415	+		GFF4302	0.86	-1.0
4,312,423	-		GFF4302	0.86	-0.8
4,312,423	-		GFF4302	0.86	-0.7
4,312,423	-		GFF4302	0.86	+0.0
4,312,423	-		GFF4302	0.86	-1.3
4,312,451	+		GFF4302	0.88	-1.1
4,312,469	-		GFF4302	0.88	+1.1
4,312,477	-		GFF4302	0.89	-1.5
4,312,479	+		GFF4302	0.89	+1.0
4,312,479	+		GFF4302	0.89	-1.1
4,312,487	-		GFF4302	0.89	+1.1
4,312,496	-		GFF4302	0.90	-1.0
4,312,497	+		GFF4302	0.90	+0.6
4,312,501	-				-0.3
4,312,505	-				-0.9
4,312,505	-				-0.4
4,312,505	-				-0.6
4,312,505	-				-0.9
4,312,505	-				-1.3
4,312,508	+				-2.2
4,312,508	+				+0.4
4,312,512	+				+0.2
4,312,515	+				-0.6
4,312,522	+				-0.3
4,312,522	+				-0.1
4,312,533	+				-2.7
4,312,541	-				+0.0
4,312,541	-				-0.1
4,312,541	-				+0.4
4,312,546	-				+0.9
4,312,546	-				-0.8
4,312,551	-				-0.6
4,312,551	-				+0.1
4,312,556	-				-0.4
4,312,581	+				-0.6
4,312,583	-				-0.4
4,312,591	+				-1.2
4,312,591	+				+0.1
4,312,591	+				-0.8
4,312,591	+				-0.6
4,312,591	+				+0.7
4,312,591	+				-0.4
4,312,591	+				-1.5
4,312,591	+				-1.5
4,312,591	+				-0.5
4,312,591	+				-0.6
4,312,591	+				-1.3
4,312,591	+				-1.7
4,312,591	+				+0.9
4,312,594	-				-1.6
4,312,594	-				-0.9
4,312,599	-				-0.9
4,312,599	-				-0.4
4,312,599	-				-0.6
4,312,599	-				-0.6
4,312,599	-				-0.3
4,312,599	-				-0.6
4,312,599	-				-1.3
4,312,599	-				+0.8
4,312,599	-				-1.3
4,312,599	-				-1.3
4,312,599	-				-0.0
4,312,607	-				-0.7
4,312,614	+				-0.3
4,312,615	+				-1.5
4,312,615	+				-1.2
4,312,627	-				-0.9
4,312,652	+				+0.0
4,312,658	+				+1.3
4,312,660	-				-2.1
4,312,663	+				+0.0
4,312,663	+				-2.2
4,312,671	-				-0.9
4,312,671	-				-1.7
4,312,671	-				-1.1
4,312,671	-				+1.8
4,312,712	+				+0.9
4,312,729	+				+1.0
4,312,729	+				-1.0
4,312,729	+				+0.0
4,312,729	+				-1.4
4,312,729	+				-0.7
4,312,729	+				-0.1
4,312,729	+				-2.0
4,312,737	-				-0.5
4,312,737	-				-1.1
4,312,737	-				-1.0
4,312,737	-				-1.6
4,312,737	-				+1.3
4,312,737	-				-1.3
4,312,737	-				+0.2
4,312,737	-				-0.1
4,312,737	-				-1.1
4,312,760	+				-1.4
4,312,762	+				-1.3
4,312,768	-				-2.3
4,312,768	-				+0.7
4,312,778	+				-2.0
4,312,779	+				-0.6
4,312,785	+				-0.5
4,312,793	-		GFF4303	0.11	-0.8
4,312,794	-		GFF4303	0.11	-0.3
4,312,813	-		GFF4303	0.13	-0.6
4,312,827	+		GFF4303	0.15	-1.8
4,312,827	+		GFF4303	0.15	+0.5
4,312,827	+		GFF4303	0.15	-1.1
4,312,827	+		GFF4303	0.15	-0.3
4,312,827	+		GFF4303	0.15	-0.2
4,312,828	-		GFF4303	0.15	-1.1
4,312,835	-		GFF4303	0.16	-0.7
4,312,835	-		GFF4303	0.16	+0.3
4,312,847	+		GFF4303	0.18	+0.4
4,312,854	+		GFF4303	0.19	-0.3
4,312,854	+		GFF4303	0.19	-0.4
4,312,854	+		GFF4303	0.19	+0.0
4,312,854	+		GFF4303	0.19	-0.6
4,312,854	-		GFF4303	0.19	-2.3
4,312,859	+		GFF4303	0.20	-0.7
4,312,862	-		GFF4303	0.20	+0.1
4,312,862	-		GFF4303	0.20	+1.3
4,312,862	-		GFF4303	0.20	-1.0
4,312,869	+		GFF4303	0.21	+0.2
4,312,899	+		GFF4303	0.25	-0.2
4,312,899	+		GFF4303	0.25	+0.2
4,312,902	-		GFF4303	0.25	+0.0
4,312,907	-		GFF4303	0.26	-1.3
4,312,907	-		GFF4303	0.26	-1.3
4,312,907	-		GFF4303	0.26	-1.4
4,312,907	-		GFF4303	0.26	+0.8
4,312,907	-		GFF4303	0.26	+1.4
4,312,914	+		GFF4303	0.27	-1.7
4,312,922	-		GFF4303	0.28	-0.9
4,312,924	+		GFF4303	0.28	-0.4
4,312,929	+		GFF4303	0.29	-1.7
4,312,932	-		GFF4303	0.29	+0.6
4,312,934	+		GFF4303	0.30	+0.2
4,312,937	-		GFF4303	0.30	-0.1
4,312,937	-		GFF4303	0.30	-0.6
4,312,937	-		GFF4303	0.30	-0.2
4,312,937	-		GFF4303	0.30	-0.8
4,312,940	+		GFF4303	0.31	-0.8
4,312,948	-		GFF4303	0.32	-1.1
4,312,953	-		GFF4303	0.32	+0.0
4,312,962	+		GFF4303	0.33	-0.3
4,312,962	+		GFF4303	0.33	+0.4
4,312,962	+		GFF4303	0.33	-1.0
4,312,970	-		GFF4303	0.35	-1.4
4,312,970	-		GFF4303	0.35	-1.0
4,312,974	+		GFF4303	0.35	-0.8
4,312,974	+		GFF4303	0.35	-1.6
4,312,976	+		GFF4303	0.35	+0.3
4,312,979	+		GFF4303	0.36	-0.5
4,312,982	-		GFF4303	0.36	-1.2
4,312,989	-		GFF4303	0.37	-1.1
4,313,004	+		GFF4303	0.39	-0.7
4,313,004	-		GFF4303	0.39	-0.5
4,313,004	-		GFF4303	0.39	-1.1
4,313,007	-		GFF4303	0.40	+0.6
4,313,009	+		GFF4303	0.40	-0.2
4,313,017	-		GFF4303	0.41	-0.6
4,313,037	-		GFF4303	0.44	+0.0
4,313,042	-		GFF4303	0.44	+0.7
4,313,047	-		GFF4303	0.45	-0.7
4,313,061	+		GFF4303	0.47	-0.7
4,313,062	-		GFF4303	0.47	-1.1
4,313,078	+		GFF4303	0.49	+0.9
4,313,085	+		GFF4303	0.50	-1.0
4,313,093	-		GFF4303	0.51	-1.0
4,313,103	+		GFF4303	0.52	+0.2
4,313,109	+		GFF4303	0.53	+0.1
4,313,145	+		GFF4303	0.58	-0.6
4,313,146	+		GFF4303	0.58	-0.7
4,313,146	+		GFF4303	0.58	-1.6
4,313,147	+		GFF4303	0.58	+0.5
4,313,147	+		GFF4303	0.58	+0.2
4,313,147	+		GFF4303	0.58	-0.4
4,313,147	+		GFF4303	0.58	-1.6
4,313,153	-		GFF4303	0.59	-1.6
4,313,154	-		GFF4303	0.59	-0.8
4,313,154	-		GFF4303	0.59	+0.5
4,313,154	-		GFF4303	0.59	-1.8
4,313,155	-		GFF4303	0.59	-0.6
4,313,155	-		GFF4303	0.59	-0.3
4,313,160	-		GFF4303	0.60	+0.2
4,313,161	+		GFF4303	0.60	-1.3
4,313,165	-		GFF4303	0.61	-1.3
4,313,179	-		GFF4303	0.63	+0.2
4,313,194	+		GFF4303	0.65	-0.3
4,313,207	-		GFF4303	0.66	-1.8
4,313,248	+		GFF4303	0.72	-2.3
4,313,264	-		GFF4303	0.74	-0.7
4,313,298	+		GFF4303	0.79	+0.3
4,313,298	+		GFF4303	0.79	-1.7
4,313,298	+		GFF4303	0.79	-0.2
4,313,306	-		GFF4303	0.80	-1.0
4,313,306	-		GFF4303	0.80	-0.7
4,313,308	+		GFF4303	0.80	-1.2
4,313,316	-		GFF4303	0.81	-1.0
4,313,332	+		GFF4303	0.83	-0.6
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4,313,376	-		GFF4303	0.89	-1.7
4,313,378	+		GFF4303	0.89	-1.0
4,313,378	+		GFF4303	0.89	-0.2
4,313,378	+		GFF4303	0.89	+0.4
4,313,378	+		GFF4303	0.89	-2.1
4,313,378	+		GFF4303	0.89	+0.7
4,313,378	+		GFF4303	0.89	-1.3
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4,313,386	-				-1.1
4,313,386	-				+0.2
4,313,386	-				-0.3
4,313,390	+				-1.2
4,313,390	+				+1.1
4,313,398	-				-1.2
4,313,402	-				-0.6
4,313,418	-				-0.7
4,313,437	+				+0.9
4,313,445	-				-0.6
4,313,454	-				-0.3
4,313,463	+				-1.3
4,313,463	+				-0.5
4,313,463	+				-1.0
4,313,463	+				-1.8
4,313,471	-				+1.1
4,313,490	+				-0.9
4,313,490	+				-1.1
4,313,498	-				-2.1
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4,313,510	+				+0.1
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4,314,182	+		GFF4304	0.71	-2.1
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4,314,406	+				+0.1
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4,314,417	+				-0.2
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4,314,423	+				+0.2
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