Strain Fitness in Sphingobium sp. HT1-2 around GFF4301

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,309,207	-				+0.5
4,309,229	+				-1.6
4,309,237	-				-0.6
4,309,237	-				-1.3
4,309,243	+				-1.4
4,309,243	+				+0.9
4,309,243	+				+0.5
4,309,243	+				+0.1
4,309,248	+				+0.8
4,309,248	+				+0.4
4,309,248	+				-0.3
4,309,248	+				-0.8
4,309,251	-				+0.1
4,309,251	-				-1.5
4,309,251	-				-0.1
4,309,253	+				-0.2
4,309,256	-				-0.6
4,309,256	-				-1.2
4,309,256	-				-1.1
4,309,256	-				+0.5
4,309,256	-				+0.4
4,309,256	-				-0.3
4,309,256	-				-1.0
4,309,261	-				-0.9
4,309,277	+				-0.7
4,309,279	+				+0.1
4,309,279	+				+1.3
4,309,279	+				+1.3
4,309,279	+				-2.6
4,309,279	+				-0.9
4,309,279	+				-1.7
4,309,279	+				+0.4
4,309,280	-				-0.9
4,309,285	+				-0.9
4,309,287	-				-0.9
4,309,287	-				-1.4
4,309,298	+				-1.2
4,309,316	+				-0.3
4,309,322	+				-1.2
4,309,324	-				-1.0
4,309,332	+				-1.3
4,309,345	+				-0.3
4,309,345	+				-0.3
4,309,353	-				-2.5
4,309,379	-				+0.4
4,309,398	+		GFF4300	0.11	+1.2
4,309,404	-		GFF4300	0.11	-0.6
4,309,406	+		GFF4300	0.12	-0.3
4,309,420	-		GFF4300	0.13	+0.3
4,309,424	+		GFF4300	0.14	-0.8
4,309,429	+		GFF4300	0.14	-0.9
4,309,429	+		GFF4300	0.14	-0.6
4,309,442	+		GFF4300	0.16	-0.1
4,309,442	-		GFF4300	0.16	+0.6
4,309,448	+		GFF4300	0.16	-0.0
4,309,454	+		GFF4300	0.17	-1.7
4,309,454	+		GFF4300	0.17	+0.1
4,309,454	+		GFF4300	0.17	+1.1
4,309,454	+		GFF4300	0.17	-0.2
4,309,454	+		GFF4300	0.17	-1.4
4,309,454	+		GFF4300	0.17	-0.5
4,309,454	+		GFF4300	0.17	-1.6
4,309,454	+		GFF4300	0.17	-0.2
4,309,454	+		GFF4300	0.17	-0.7
4,309,454	+		GFF4300	0.17	+0.8
4,309,454	+		GFF4300	0.17	-0.7
4,309,454	+		GFF4300	0.17	-1.0
4,309,454	+		GFF4300	0.17	-0.6
4,309,454	+		GFF4300	0.17	-2.5
4,309,454	+		GFF4300	0.17	+0.5
4,309,454	+		GFF4300	0.17	-0.9
4,309,454	+		GFF4300	0.17	+0.4
4,309,454	+		GFF4300	0.17	+0.5
4,309,456	-		GFF4300	0.17	+1.7
4,309,456	-		GFF4300	0.17	+0.6
4,309,459	+		GFF4300	0.18	-1.2
4,309,459	+		GFF4300	0.18	-1.6
4,309,459	+		GFF4300	0.18	-1.9
4,309,459	+		GFF4300	0.18	-0.3
4,309,462	-		GFF4300	0.18	-1.6
4,309,462	-		GFF4300	0.18	+0.1
4,309,462	-		GFF4300	0.18	-0.8
4,309,462	-		GFF4300	0.18	-1.0
4,309,462	-		GFF4300	0.18	-0.1
4,309,462	-		GFF4300	0.18	-1.0
4,309,462	-		GFF4300	0.18	+0.3
4,309,462	-		GFF4300	0.18	-0.7
4,309,462	-		GFF4300	0.18	+0.3
4,309,462	-		GFF4300	0.18	-0.7
4,309,462	-		GFF4300	0.18	-0.7
4,309,462	-		GFF4300	0.18	-1.1
4,309,462	-		GFF4300	0.18	-0.8
4,309,462	-		GFF4300	0.18	-1.5
4,309,462	-		GFF4300	0.18	-3.0
4,309,462	-		GFF4300	0.18	-1.4
4,309,462	-		GFF4300	0.18	-1.9
4,309,462	-		GFF4300	0.18	-0.1
4,309,462	-		GFF4300	0.18	-0.7
4,309,462	-		GFF4300	0.18	-1.2
4,309,467	-		GFF4300	0.18	+0.0
4,309,468	+		GFF4300	0.19	-0.8
4,309,468	+		GFF4300	0.19	+0.9
4,309,472	-		GFF4300	0.19	-0.4
4,309,483	-		GFF4300	0.20	-1.3
4,309,483	-		GFF4300	0.20	-2.8
4,309,491	-		GFF4300	0.21	-1.8
4,309,492	+		GFF4300	0.21	+0.2
4,309,492	+		GFF4300	0.21	-0.8
4,309,498	+		GFF4300	0.22	+0.2
4,309,498	+		GFF4300	0.22	-1.1
4,309,506	-		GFF4300	0.23	-0.3
4,309,536	+		GFF4300	0.26	-0.6
4,309,538	-		GFF4300	0.26	+1.0
4,309,539	-		GFF4300	0.26	-1.8
4,309,539	-		GFF4300	0.26	-0.7
4,309,545	-		GFF4300	0.27	+1.0
4,309,553	-		GFF4300	0.28	+1.2
4,309,558	+		GFF4300	0.28	+0.1
4,309,569	+		GFF4300	0.30	-0.9
4,309,569	+		GFF4300	0.30	-1.8
4,309,587	-		GFF4300	0.32	+0.3
4,309,619	+		GFF4300	0.35	+0.6
4,309,627	-		GFF4300	0.36	-0.5
4,309,661	+		GFF4300	0.40	-0.9
4,309,661	+		GFF4300	0.40	-1.0
4,309,661	+		GFF4300	0.40	+0.2
4,309,661	+		GFF4300	0.40	-0.3
4,309,669	-		GFF4300	0.41	+0.5
4,309,669	-		GFF4300	0.41	-0.1
4,309,669	-		GFF4300	0.41	-0.0
4,309,676	+		GFF4300	0.42	-2.6
4,309,676	+		GFF4300	0.42	+0.5
4,309,679	-		GFF4300	0.42	-0.9
4,309,684	-		GFF4300	0.42	-0.1
4,309,691	+		GFF4300	0.43	-1.4
4,309,711	+		GFF4300	0.45	-0.3
4,309,718	+		GFF4300	0.46	-1.5
4,309,718	+		GFF4300	0.46	-2.2
4,309,718	+		GFF4300	0.46	-1.8
4,309,718	+		GFF4300	0.46	-2.6
4,309,718	+		GFF4300	0.46	-0.7
4,309,718	+		GFF4300	0.46	-0.3
4,309,718	+		GFF4300	0.46	-1.1
4,309,718	+		GFF4300	0.46	-1.1
4,309,721	-		GFF4300	0.46	-0.5
4,309,726	-		GFF4300	0.47	+0.4
4,309,736	-		GFF4300	0.48	-0.8
4,309,746	-		GFF4300	0.49	-1.7
4,309,748	-		GFF4300	0.49	-0.7
4,309,755	+		GFF4300	0.50	-1.1
4,309,761	-		GFF4300	0.51	-0.9
4,309,761	-		GFF4300	0.51	-0.8
4,309,761	-		GFF4300	0.51	-0.5
4,309,763	-		GFF4300	0.51	-0.1
4,309,773	+		GFF4300	0.52	+0.0
4,309,830	+		GFF4300	0.58	+0.3
4,309,835	+		GFF4300	0.59	-1.0
4,309,860	-		GFF4300	0.62	-2.7
4,309,892	-		GFF4300	0.65	-1.4
4,309,898	+		GFF4300	0.66	-1.5
4,309,899	-		GFF4300	0.66	-1.2
4,309,906	-		GFF4300	0.67	-0.6
4,309,932	-		GFF4300	0.70	-0.4
4,309,937	+		GFF4300	0.70	-1.7
4,309,938	+		GFF4300	0.70	-0.8
4,309,938	+		GFF4300	0.70	-1.2
4,309,938	+		GFF4300	0.70	-0.0
4,309,943	+		GFF4300	0.71	+0.3
4,309,943	+		GFF4300	0.71	-1.1
4,309,943	+		GFF4300	0.71	-0.6
4,309,943	+		GFF4300	0.71	-0.6
4,309,945	-		GFF4300	0.71	-0.4
4,309,946	-		GFF4300	0.71	-0.8
4,309,946	-		GFF4300	0.71	+0.9
4,309,946	-		GFF4300	0.71	-1.0
4,309,946	-		GFF4300	0.71	-0.7
4,309,951	-		GFF4300	0.72	-1.2
4,309,951	-		GFF4300	0.72	-0.2
4,309,951	-		GFF4300	0.72	-1.6
4,309,951	-		GFF4300	0.72	+1.3
4,309,951	-		GFF4300	0.72	-1.4
4,309,951	-		GFF4300	0.72	+2.1
4,309,958	+		GFF4300	0.73	-0.6
4,309,961	-		GFF4300	0.73	-0.5
4,309,966	-		GFF4300	0.74	-1.2
4,310,001	-		GFF4300	0.77	-0.6
4,310,009	+		GFF4300	0.78	-1.2
4,310,033	-		GFF4300	0.81	-0.7
4,310,051	-		GFF4300	0.83	+0.0
4,310,102	+		GFF4300	0.89	+0.5
4,310,148	-				-0.8
4,310,150	-				-1.6
4,310,170	-				+0.2
4,310,178	-				-0.8
4,310,181	+				-1.7
4,310,181	+				-1.3
4,310,181	+				-0.6
4,310,181	+				-1.7
4,310,181	+				-1.6
4,310,181	+				-2.0
4,310,181	+				+1.2
4,310,181	+				-0.6
4,310,181	+				+0.4
4,310,181	+				-1.3
4,310,181	+				-1.0
4,310,181	+				+0.5
4,310,188	+				-1.2
4,310,188	+				+0.3
4,310,188	+				-0.3
4,310,188	+				-1.0
4,310,188	+				+0.4
4,310,188	+				-2.3
4,310,188	+				-0.4
4,310,188	+				-0.3
4,310,188	+				+0.0
4,310,188	+				+1.0
4,310,188	+				+0.4
4,310,188	+				-0.7
4,310,188	+				-1.9
4,310,188	+				+0.6
4,310,188	+				-1.4
4,310,188	+				-1.4
4,310,189	-				-0.7
4,310,189	-				-1.2
4,310,189	-				-2.7
4,310,189	-				-1.4
4,310,189	-				+0.1
4,310,189	-				+0.0
4,310,189	-				-1.6
4,310,189	-				-1.9
4,310,189	-				+0.4
4,310,189	-				-0.9
4,310,189	-				+0.1
4,310,190	-				-2.5
4,310,195	-				-0.3
4,310,196	-				-1.7
4,310,196	-				-1.7
4,310,196	-				-0.6
4,310,196	-				+0.1
4,310,196	-				-0.9
4,310,196	-				-0.8
4,310,196	-				-0.3
4,310,196	-				-2.9
4,310,196	-				-0.1
4,310,196	-				-1.6
4,310,196	-				-1.6
4,310,196	-				-1.3
4,310,196	-				-0.4
4,310,203	-				-1.9
4,310,205	+				-0.4
4,310,213	-				+0.2
4,310,213	-				-1.1
4,310,213	-				-0.3
4,310,213	-				-1.0
4,310,213	-				+0.4
4,310,260	+		GFF4301	0.13	-1.4
4,310,260	+		GFF4301	0.13	+0.3
4,310,260	+		GFF4301	0.13	-1.2
4,310,269	-		GFF4301	0.15	-1.5
4,310,270	+		GFF4301	0.15	-0.8
4,310,270	+		GFF4301	0.15	-2.2
4,310,278	-		GFF4301	0.17	-1.0
4,310,288	-		GFF4301	0.20	-1.3
4,310,289	-		GFF4301	0.20	+1.3
4,310,290	-		GFF4301	0.20	-0.8
4,310,299	-		GFF4301	0.22	+0.2
4,310,322	-		GFF4301	0.28	-0.8
4,310,327	-		GFF4301	0.29	-0.8
4,310,327	-		GFF4301	0.29	-1.8
4,310,350	-		GFF4301	0.35	-1.3
4,310,361	+		GFF4301	0.37	+0.4
4,310,361	+		GFF4301	0.37	-0.1
4,310,361	+		GFF4301	0.37	+0.1
4,310,361	+		GFF4301	0.37	-2.1
4,310,361	+		GFF4301	0.37	-1.2
4,310,361	+		GFF4301	0.37	-0.4
4,310,369	-		GFF4301	0.39	-2.5
4,310,379	-		GFF4301	0.42	-0.9
4,310,381	-		GFF4301	0.42	+0.0
4,310,394	-		GFF4301	0.45	-0.4
4,310,398	+		GFF4301	0.46	+1.1
4,310,406	-		GFF4301	0.48	+1.0
4,310,406	-		GFF4301	0.48	-0.7
4,310,406	-		GFF4301	0.48	-1.2
4,310,419	-		GFF4301	0.51	-2.4
4,310,421	+		GFF4301	0.52	-0.7
4,310,424	-		GFF4301	0.52	-1.5
4,310,460	-		GFF4301	0.61	+0.4
4,310,473	+		GFF4301	0.64	-1.9
4,310,521	+		GFF4301	0.76	-0.6
4,310,528	-		GFF4301	0.78	-0.9
4,310,529	-		GFF4301	0.78	+0.2
4,310,532	+		GFF4301	0.79	-0.8
4,310,532	+		GFF4301	0.79	-1.5
4,310,532	+		GFF4301	0.79	+1.5
4,310,532	+		GFF4301	0.79	-0.8
4,310,532	+		GFF4301	0.79	-2.3
4,310,532	+		GFF4301	0.79	+0.0
4,310,532	+		GFF4301	0.79	-0.6
4,310,532	+		GFF4301	0.79	-0.8
4,310,540	-		GFF4301	0.80	+0.5
4,310,540	-		GFF4301	0.80	+0.1
4,310,540	-		GFF4301	0.80	-0.7
4,310,540	-		GFF4301	0.80	-1.3
4,310,540	-		GFF4301	0.80	-1.9
4,310,542	+		GFF4301	0.81	-0.7
4,310,552	-		GFF4301	0.83	-0.9
4,310,573	-		GFF4301	0.88	-1.7
4,310,594	-				-0.9
4,310,626	-				-1.3
4,310,636	+				+0.0
4,310,645	+				-0.3
4,310,645	+				-0.4
4,310,645	+				-1.5
4,310,645	+				-0.3
4,310,645	+				-0.4
4,310,645	+				-0.9
4,310,645	+				-0.7
4,310,645	+				-0.7
4,310,645	+				+0.4
4,310,645	+				-0.6
4,310,645	+				-0.4
4,310,645	+				-2.1
4,310,653	-				-1.1
4,310,653	-				-1.4
4,310,653	-				-0.6
4,310,653	-				-1.5
4,310,667	+				-0.4
4,310,667	+				-1.1
4,310,667	+				-0.4
4,310,667	+				-1.5
4,310,667	+				-0.5
4,310,667	+				-0.8
4,310,675	-				+0.3
4,310,684	+				-1.3
4,310,694	+				-1.2
4,310,717	+				-0.2
4,310,747	+				-0.3
4,310,781	-				-0.7
4,310,787	-				+1.5
4,310,801	-				-0.3
4,310,806	+				+2.1
4,310,806	+				-0.5
4,310,814	-				+0.1
4,310,816	+				-1.3
4,310,821	-				-0.3
4,310,822	-				-1.1
4,310,834	+		GFF4302	0.10	-1.9
4,310,852	+		GFF4302	0.11	+1.1
4,310,873	-		GFF4302	0.12	-0.7
4,310,875	+		GFF4302	0.12	-0.8
4,310,875	+		GFF4302	0.12	+1.1
4,310,875	+		GFF4302	0.12	-1.5
4,310,883	-		GFF4302	0.13	-1.5
4,310,883	-		GFF4302	0.13	-0.7
4,310,883	-		GFF4302	0.13	-0.4
4,310,883	-		GFF4302	0.13	-1.3
4,310,883	-		GFF4302	0.13	-0.9
4,310,883	-		GFF4302	0.13	-0.9
4,310,883	-		GFF4302	0.13	+1.4
4,310,883	-		GFF4302	0.13	-0.8
4,310,889	+		GFF4302	0.13	+0.2
4,310,905	+		GFF4302	0.14	-0.3
4,310,905	+		GFF4302	0.14	-0.8
4,310,906	+		GFF4302	0.14	-0.6
4,310,913	-		GFF4302	0.14	+0.2
4,310,921	+		GFF4302	0.15	-1.5
4,310,921	+		GFF4302	0.15	+0.3
4,310,921	+		GFF4302	0.15	-0.9
4,310,921	+		GFF4302	0.15	+0.2
4,310,921	+		GFF4302	0.15	-1.2
4,310,921	+		GFF4302	0.15	-1.2
4,310,921	+		GFF4302	0.15	-1.3
4,310,924	-		GFF4302	0.15	-1.5
4,310,926	+		GFF4302	0.15	-0.9
4,310,926	+		GFF4302	0.15	-0.8
4,310,929	-		GFF4302	0.15	-0.3
4,310,929	-		GFF4302	0.15	+1.0
4,310,929	-		GFF4302	0.15	-1.7
4,310,929	-		GFF4302	0.15	+0.2
4,310,934	-		GFF4302	0.15	+0.1
4,310,947	+		GFF4302	0.16	-1.2
4,310,959	+		GFF4302	0.16	-0.8
4,310,959	+		GFF4302	0.16	-0.3
4,310,967	-		GFF4302	0.17	-0.3
4,310,984	-		GFF4302	0.18	-0.1
4,310,993	-		GFF4302	0.18	-0.6
4,310,995	+		GFF4302	0.18	-0.4
4,310,995	+		GFF4302	0.18	-0.6
4,311,001	-		GFF4302	0.18	-2.9
4,311,003	-		GFF4302	0.18	-1.1
4,311,004	+		GFF4302	0.18	+0.9
4,311,074	+		GFF4302	0.22	-1.0
4,311,074	+		GFF4302	0.22	-0.8
4,311,074	+		GFF4302	0.22	-1.0
4,311,074	+		GFF4302	0.22	+0.1
4,311,078	+		GFF4302	0.22	-1.4
4,311,082	-		GFF4302	0.22	-0.2
4,311,084	+		GFF4302	0.22	-1.3
4,311,084	+		GFF4302	0.22	-0.5
4,311,084	+		GFF4302	0.22	-0.9
4,311,085	+		GFF4302	0.22	-0.2
4,311,091	+		GFF4302	0.23	-0.2
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4,311,092	-		GFF4302	0.23	+0.0
4,311,092	-		GFF4302	0.23	-0.8
4,311,092	-		GFF4302	0.23	-0.6
4,311,093	-		GFF4302	0.23	+0.3
4,311,093	-		GFF4302	0.23	-1.8
4,311,106	+		GFF4302	0.23	-1.0
4,311,107	+		GFF4302	0.23	+0.5
4,311,109	+		GFF4302	0.23	-0.5
4,311,118	+		GFF4302	0.24	+0.2
4,311,118	+		GFF4302	0.24	+0.3
4,311,136	-		GFF4302	0.25	-0.8
4,311,152	+		GFF4302	0.26	-0.1
4,311,152	+		GFF4302	0.26	-2.5
4,311,157	+		GFF4302	0.26	-1.7
4,311,176	+		GFF4302	0.27	-1.9
4,311,176	+		GFF4302	0.27	-1.2
4,311,179	-		GFF4302	0.27	-0.9
4,311,184	-		GFF4302	0.27	-0.6
4,311,184	-		GFF4302	0.27	-2.0
4,311,188	+		GFF4302	0.27	-0.5
4,311,188	+		GFF4302	0.27	-1.1
4,311,188	+		GFF4302	0.27	-1.3
4,311,189	-		GFF4302	0.27	-1.0
4,311,193	+		GFF4302	0.28	-2.2
4,311,196	-		GFF4302	0.28	+0.4
4,311,196	-		GFF4302	0.28	+0.1
4,311,196	-		GFF4302	0.28	-0.2
4,311,198	+		GFF4302	0.28	-1.7
4,311,198	+		GFF4302	0.28	-0.8
4,311,199	+		GFF4302	0.28	-2.3
4,311,203	+		GFF4302	0.28	-0.5
4,311,206	-		GFF4302	0.28	-1.8
4,311,206	-		GFF4302	0.28	-1.3
4,311,207	+		GFF4302	0.28	-0.1
4,311,211	-		GFF4302	0.28	-0.4
4,311,227	+		GFF4302	0.29	-0.4
4,311,245	+		GFF4302	0.30	-0.1
4,311,260	+		GFF4302	0.31	-0.0
4,311,260	+		GFF4302	0.31	+1.4
4,311,263	-		GFF4302	0.31	-1.7
4,311,268	-		GFF4302	0.31	+0.2
4,311,268	-		GFF4302	0.31	+0.1
4,311,268	-		GFF4302	0.31	-1.5
4,311,268	-		GFF4302	0.31	-0.6
4,311,268	-		GFF4302	0.31	-0.3
4,311,268	-		GFF4302	0.31	+0.1
4,311,291	-		GFF4302	0.32	-1.2
4,311,346	+		GFF4302	0.35	-0.1
4,311,346	+		GFF4302	0.35	+1.4
4,311,346	+		GFF4302	0.35	-1.7
4,311,347	+		GFF4302	0.35	-0.4
4,311,347	+		GFF4302	0.35	-0.2
4,311,347	+		GFF4302	0.35	-1.1
4,311,355	-		GFF4302	0.35	+1.4
4,311,355	-		GFF4302	0.35	-0.1
4,311,365	+		GFF4302	0.36	+0.9
4,311,367	-		GFF4302	0.36	-0.7
4,311,374	-		GFF4302	0.36	-1.1
4,311,377	-		GFF4302	0.36	+0.4
4,311,379	+		GFF4302	0.36	+1.0
4,311,387	-		GFF4302	0.37	-1.1
4,311,398	-		GFF4302	0.37	-0.2
4,311,411	+		GFF4302	0.38	-0.7
4,311,411	+		GFF4302	0.38	-1.0
4,311,411	+		GFF4302	0.38	-0.4
4,311,411	+		GFF4302	0.38	+0.1
4,311,413	+		GFF4302	0.38	-1.8
4,311,419	-		GFF4302	0.38	-0.6
4,311,419	-		GFF4302	0.38	-1.1
4,311,464	-		GFF4302	0.40	-1.0
4,311,468	+		GFF4302	0.41	-1.1
4,311,473	+		GFF4302	0.41	-1.2
4,311,478	-		GFF4302	0.41	-1.7
4,311,483	-		GFF4302	0.41	-1.7
4,311,511	+		GFF4302	0.43	-0.2
4,311,512	+		GFF4302	0.43	-0.1
4,311,519	-		GFF4302	0.43	-0.2
4,311,529	-		GFF4302	0.44	-2.5
4,311,580	+		GFF4302	0.46	+1.0
4,311,580	+		GFF4302	0.46	+0.8
4,311,580	+		GFF4302	0.46	+0.9
4,311,601	+		GFF4302	0.47	-0.9
4,311,607	-		GFF4302	0.47	+0.1
4,311,607	-		GFF4302	0.47	-0.8