Strain Fitness in Sphingobium sp. HT1-2 around GFF4227

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,242,349	-				+0.1
4,242,355	-				-0.4
4,242,360	+				-2.0
4,242,360	+				-0.5
4,242,360	-				-0.7
4,242,360	-				-1.6
4,242,360	-				-2.4
4,242,360	-				+1.0
4,242,365	-				-0.1
4,242,365	-				-1.8
4,242,368	-				-0.1
4,242,372	+				+0.5
4,242,419	-				+1.8
4,242,419	-				-0.6
4,242,458	+				+1.2
4,242,466	-				-0.6
4,242,471	-				-1.0
4,242,473	-				+0.2
4,242,505	-				+0.6
4,242,507	+				+0.3
4,242,515	-				-1.4
4,242,558	+		GFF4225	0.38	+0.2
4,242,578	+		GFF4225	0.53	+1.3
4,242,596	-		GFF4225	0.66	+0.1
4,242,604	-		GFF4225	0.72	+0.4
4,242,615	+		GFF4225	0.80	+0.8
4,242,615	+		GFF4225	0.80	+0.7
4,242,623	-		GFF4225	0.86	-0.5
4,242,623	-		GFF4225	0.86	-0.1
4,242,630	+				-1.0
4,242,631	-				+0.4
4,242,649	+				-1.5
4,242,649	+				+0.4
4,242,660	+				-0.1
4,242,707	+				+0.1
4,242,719	+				-0.0
4,242,719	+				-2.5
4,242,768	-				-0.5
4,242,771	+				+0.4
4,242,776	+				-0.6
4,242,784	-				-0.5
4,242,788	+				+1.1
4,242,788	-				+0.4
4,242,796	-				-0.4
4,242,796	-				+0.2
4,242,796	-				+0.3
4,242,796	-				+1.5
4,242,798	+				-0.0
4,242,798	+				-1.3
4,242,803	+				-1.3
4,242,806	-				-0.7
4,242,806	-				-2.3
4,242,806	-				-0.8
4,242,808	+				+0.0
4,242,856	+		GFF4226	0.19	+0.2
4,242,856	+		GFF4226	0.19	-0.2
4,242,856	+		GFF4226	0.19	-0.8
4,242,864	-		GFF4226	0.20	+0.5
4,242,864	-		GFF4226	0.20	+0.3
4,242,873	-		GFF4226	0.23	-0.6
4,242,874	+		GFF4226	0.23	-0.1
4,242,875	+		GFF4226	0.23	-0.4
4,242,897	-		GFF4226	0.28	-0.2
4,242,903	+		GFF4226	0.30	-0.8
4,242,903	+		GFF4226	0.30	-0.2
4,242,903	+		GFF4226	0.30	-0.5
4,242,908	+		GFF4226	0.31	-0.5
4,242,920	-		GFF4226	0.34	-1.4
4,242,940	+		GFF4226	0.38	-0.1
4,242,948	-		GFF4226	0.40	-2.0
4,242,948	-		GFF4226	0.40	-0.8
4,242,950	-		GFF4226	0.41	-0.0
4,242,953	-		GFF4226	0.41	-2.2
4,242,957	+		GFF4226	0.42	-1.2
4,242,965	-		GFF4226	0.44	-1.5
4,242,965	-		GFF4226	0.44	-1.0
4,242,967	+		GFF4226	0.45	-0.1
4,242,975	-		GFF4226	0.46	-2.1
4,242,975	-		GFF4226	0.46	-0.6
4,242,975	-		GFF4226	0.46	+0.9
4,242,992	-		GFF4226	0.50	-0.5
4,242,992	-		GFF4226	0.50	-1.4
4,242,997	-		GFF4226	0.52	-0.7
4,243,021	+		GFF4226	0.57	-0.4
4,243,029	-		GFF4226	0.59	+0.2
4,243,050	+		GFF4226	0.64	+2.1
4,243,055	+		GFF4226	0.65	+0.3
4,243,058	-		GFF4226	0.66	-1.9
4,243,065	-		GFF4226	0.68	-1.3
4,243,068	+		GFF4226	0.68	-0.3
4,243,068	+		GFF4226	0.68	-0.4
4,243,068	+		GFF4226	0.68	-0.4
4,243,071	-		GFF4226	0.69	+1.1
4,243,076	-		GFF4226	0.70	+1.6
4,243,076	-		GFF4226	0.70	-0.6
4,243,076	-		GFF4226	0.70	+1.0
4,243,076	-		GFF4226	0.70	-1.2
4,243,076	-		GFF4226	0.70	+1.1
4,243,076	-		GFF4226	0.70	-0.9
4,243,086	+		GFF4226	0.73	-0.3
4,243,096	+		GFF4226	0.75	+0.4
4,243,128	-		GFF4226	0.82	-0.6
4,243,135	+		GFF4226	0.84	-0.5
4,243,142	+		GFF4226	0.86	+0.8
4,243,142	+		GFF4226	0.86	-0.2
4,243,148	+		GFF4226	0.87	+0.1
4,243,156	+		GFF4226	0.89	-0.8
4,243,157	-		GFF4226	0.89	+0.6
4,243,158	+		GFF4226	0.89	+0.9
4,243,164	-				-0.6
4,243,166	-				-1.7
4,243,188	-				+0.9
4,243,192	+				-1.9
4,243,192	+				-1.3
4,243,192	+				-0.7
4,243,192	+				+1.0
4,243,192	+				-0.8
4,243,192	+				+0.4
4,243,192	+				-0.7
4,243,197	+				+1.1
4,243,197	+				-1.8
4,243,200	-				-0.3
4,243,200	-				-1.3
4,243,200	-				-0.6
4,243,200	-				-0.3
4,243,205	-				-1.3
4,243,205	-				-0.1
4,243,207	+				-0.7
4,243,207	+				-1.0
4,243,215	-				-1.0
4,243,221	-				-0.8
4,243,236	-				-0.1
4,243,236	-				-1.3
4,243,241	-				-0.4
4,243,247	+				-1.1
4,243,300	+				-1.8
4,243,307	+				-1.2
4,243,314	+				-0.8
4,243,314	+				+0.6
4,243,314	+				-1.5
4,243,314	+				-0.6
4,243,314	+				-0.1
4,243,314	+				-0.6
4,243,314	+				-0.8
4,243,314	+				-1.0
4,243,314	+				-1.7
4,243,314	+				+1.5
4,243,314	+				-0.9
4,243,314	+				-1.4
4,243,314	+				-0.5
4,243,314	+				+0.0
4,243,322	-				-0.9
4,243,322	-				-0.5
4,243,322	-				-0.9
4,243,322	-				+0.1
4,243,322	-				-0.3
4,243,322	-				-0.5
4,243,322	-				-0.8
4,243,322	-				+1.1
4,243,322	-				+0.6
4,243,322	-				+1.5
4,243,322	-				-2.3
4,243,322	-				+0.1
4,243,322	-				-0.3
4,243,351	+				-0.5
4,243,351	+				+0.3
4,243,352	+				+1.1
4,243,352	+				-0.4
4,243,355	-				-0.0
4,243,355	-				-0.5
4,243,357	+				+0.5
4,243,357	+				-1.0
4,243,359	-				-2.4
4,243,360	-				+1.0
4,243,360	-				-1.1
4,243,365	-				+0.4
4,243,370	-				+0.2
4,243,408	-				-0.4
4,243,415	+				-1.4
4,243,417	+				+0.5
4,243,425	-				+0.4
4,243,430	-				-1.3
4,243,447	-				-0.5
4,243,476	-		GFF4227	0.11	+0.4
4,243,478	+		GFF4227	0.12	-0.3
4,243,479	-		GFF4227	0.12	-0.6
4,243,495	-		GFF4227	0.13	-0.8
4,243,518	-		GFF4227	0.15	-0.8
4,243,532	+		GFF4227	0.16	-1.4
4,243,540	-		GFF4227	0.17	-1.1
4,243,542	+		GFF4227	0.17	-1.4
4,243,550	-		GFF4227	0.18	+0.9
4,243,550	-		GFF4227	0.18	+0.5
4,243,550	-		GFF4227	0.18	-1.8
4,243,550	-		GFF4227	0.18	-1.6
4,243,576	+		GFF4227	0.20	-1.3
4,243,580	+		GFF4227	0.21	+0.2
4,243,581	+		GFF4227	0.21	-0.6
4,243,589	-		GFF4227	0.21	-0.7
4,243,592	+		GFF4227	0.22	-2.0
4,243,594	-		GFF4227	0.22	-0.5
4,243,598	+		GFF4227	0.22	-0.8
4,243,600	-		GFF4227	0.22	-0.1
4,243,617	+		GFF4227	0.24	-1.2
4,243,647	+		GFF4227	0.27	-1.6
4,243,647	+		GFF4227	0.27	+0.6
4,243,649	-		GFF4227	0.27	-1.9
4,243,661	+		GFF4227	0.28	-0.2
4,243,661	+		GFF4227	0.28	-1.0
4,243,661	+		GFF4227	0.28	-0.4
4,243,661	+		GFF4227	0.28	-1.7
4,243,661	+		GFF4227	0.28	-0.6
4,243,661	+		GFF4227	0.28	-2.2
4,243,661	+		GFF4227	0.28	-1.4
4,243,661	+		GFF4227	0.28	-0.8
4,243,661	+		GFF4227	0.28	-2.0
4,243,661	+		GFF4227	0.28	-0.4
4,243,664	-		GFF4227	0.28	+0.5
4,243,669	-		GFF4227	0.29	+0.2
4,243,669	-		GFF4227	0.29	+0.4
4,243,669	-		GFF4227	0.29	-0.0
4,243,669	-		GFF4227	0.29	+1.3
4,243,669	-		GFF4227	0.29	-0.1
4,243,669	-		GFF4227	0.29	-0.6
4,243,669	-		GFF4227	0.29	-0.6
4,243,669	-		GFF4227	0.29	+0.3
4,243,669	-		GFF4227	0.29	-1.7
4,243,669	-		GFF4227	0.29	-0.0
4,243,669	-		GFF4227	0.29	-1.4
4,243,669	-		GFF4227	0.29	-0.8
4,243,669	-		GFF4227	0.29	-1.1
4,243,669	-		GFF4227	0.29	-0.2
4,243,669	-		GFF4227	0.29	+1.1
4,243,669	-		GFF4227	0.29	+1.2
4,243,669	-		GFF4227	0.29	-2.1
4,243,669	-		GFF4227	0.29	+0.4
4,243,669	-		GFF4227	0.29	-0.6
4,243,669	-		GFF4227	0.29	-0.2
4,243,671	+		GFF4227	0.29	-2.9
4,243,671	+		GFF4227	0.29	-0.4
4,243,676	+		GFF4227	0.29	+0.7
4,243,677	-		GFF4227	0.29	-0.2
4,243,679	-		GFF4227	0.29	-0.6
4,243,679	-		GFF4227	0.29	+0.9
4,243,684	+		GFF4227	0.30	-1.4
4,243,708	+		GFF4227	0.32	-1.0
4,243,708	+		GFF4227	0.32	+0.4
4,243,716	-		GFF4227	0.33	-2.0
4,243,723	+		GFF4227	0.33	-2.4
4,243,740	+		GFF4227	0.35	-0.5
4,243,757	+		GFF4227	0.36	+0.5
4,243,758	+		GFF4227	0.37	-0.6
4,243,760	+		GFF4227	0.37	-1.8
4,243,760	+		GFF4227	0.37	-1.0
4,243,763	+		GFF4227	0.37	-1.0
4,243,766	-		GFF4227	0.37	-1.2
4,243,768	+		GFF4227	0.37	+0.2
4,243,768	+		GFF4227	0.37	-2.4
4,243,768	+		GFF4227	0.37	-1.1
4,243,768	-		GFF4227	0.37	-0.8
4,243,768	-		GFF4227	0.37	-1.2
4,243,771	-		GFF4227	0.38	+0.3
4,243,776	-		GFF4227	0.38	-1.2
4,243,789	+		GFF4227	0.39	-0.1
4,243,820	+		GFF4227	0.42	-1.2
4,243,820	+		GFF4227	0.42	+0.4
4,243,820	+		GFF4227	0.42	-0.3
4,243,828	-		GFF4227	0.43	-1.4
4,243,828	-		GFF4227	0.43	-0.1
4,243,835	+		GFF4227	0.43	-1.3
4,243,835	+		GFF4227	0.43	-0.9
4,243,835	+		GFF4227	0.43	+0.7
4,243,843	-		GFF4227	0.44	+1.1
4,243,843	-		GFF4227	0.44	-0.5
4,243,843	-		GFF4227	0.44	-0.2
4,243,889	+		GFF4227	0.48	+0.1
4,243,891	+		GFF4227	0.48	-1.0
4,243,899	-		GFF4227	0.49	+0.1
4,243,904	-		GFF4227	0.50	-0.2
4,243,914	+		GFF4227	0.50	-1.7
4,243,916	+		GFF4227	0.51	-0.6
4,243,924	-		GFF4227	0.51	+0.4
4,243,924	-		GFF4227	0.51	+0.3
4,243,936	+		GFF4227	0.52	+1.1
4,243,936	+		GFF4227	0.52	-0.8
4,243,936	+		GFF4227	0.52	+0.2
4,243,936	+		GFF4227	0.52	-0.3
4,243,936	+		GFF4227	0.52	+0.2
4,243,936	+		GFF4227	0.52	+1.0
4,243,936	+		GFF4227	0.52	-1.1
4,243,944	-		GFF4227	0.53	-0.9
4,243,944	-		GFF4227	0.53	-2.6
4,243,944	-		GFF4227	0.53	-0.1
4,243,944	-		GFF4227	0.53	-0.9
4,243,944	-		GFF4227	0.53	-1.4
4,243,944	-		GFF4227	0.53	-0.5
4,243,944	-		GFF4227	0.53	-0.5
4,243,944	-		GFF4227	0.53	-1.1
4,243,944	-		GFF4227	0.53	-0.3
4,243,944	-		GFF4227	0.53	+0.9
4,243,944	-		GFF4227	0.53	+0.6
4,243,944	-		GFF4227	0.53	-1.1
4,243,944	-		GFF4227	0.53	-0.6
4,243,944	-		GFF4227	0.53	-0.5
4,243,956	+		GFF4227	0.54	-1.1
4,243,964	-		GFF4227	0.55	-0.8
4,243,978	-		GFF4227	0.56	-0.2
4,243,987	+		GFF4227	0.57	-1.5
4,243,987	+		GFF4227	0.57	-0.8
4,243,987	+		GFF4227	0.57	-0.8
4,243,987	+		GFF4227	0.57	+0.8
4,243,988	-		GFF4227	0.57	+0.6
4,243,995	-		GFF4227	0.58	+0.2
4,243,998	+		GFF4227	0.58	+0.3
4,244,006	-		GFF4227	0.59	+1.4
4,244,008	+		GFF4227	0.59	-0.8
4,244,008	+		GFF4227	0.59	-1.9
4,244,009	+		GFF4227	0.59	+0.0
4,244,016	-		GFF4227	0.60	-1.7
4,244,024	-		GFF4227	0.60	+1.0
4,244,036	+		GFF4227	0.61	-0.7
4,244,054	+		GFF4227	0.63	+0.4
4,244,055	+		GFF4227	0.63	-0.8
4,244,062	-		GFF4227	0.64	-1.6
4,244,070	+		GFF4227	0.64	-1.0
4,244,070	+		GFF4227	0.64	+1.2
4,244,070	+		GFF4227	0.64	-2.0
4,244,070	+		GFF4227	0.64	+0.5
4,244,086	+		GFF4227	0.66	-1.4
4,244,087	+		GFF4227	0.66	-1.0
4,244,108	+		GFF4227	0.68	-0.7
4,244,110	+		GFF4227	0.68	-0.8
4,244,110	+		GFF4227	0.68	-0.5
4,244,110	+		GFF4227	0.68	+0.3
4,244,110	+		GFF4227	0.68	-0.5
4,244,110	+		GFF4227	0.68	+0.1
4,244,117	-		GFF4227	0.69	-0.8
4,244,118	-		GFF4227	0.69	+1.0
4,244,118	-		GFF4227	0.69	-1.3
4,244,118	-		GFF4227	0.69	+0.4
4,244,118	-		GFF4227	0.69	-0.8
4,244,118	-		GFF4227	0.69	-0.8
4,244,118	-		GFF4227	0.69	-0.4
4,244,118	-		GFF4227	0.69	-0.9
4,244,118	-		GFF4227	0.69	-1.6
4,244,118	-		GFF4227	0.69	-1.1
4,244,120	+		GFF4227	0.69	-1.9
4,244,139	+		GFF4227	0.71	-0.5
4,244,147	-		GFF4227	0.71	+0.4
4,244,157	-		GFF4227	0.72	-1.3
4,244,164	+		GFF4227	0.73	-0.5
4,244,174	-		GFF4227	0.74	-0.7
4,244,174	-		GFF4227	0.74	-0.8
4,244,176	+		GFF4227	0.74	-1.0
4,244,209	+		GFF4227	0.77	-1.3
4,244,224	-		GFF4227	0.78	+0.2
4,244,224	-		GFF4227	0.78	-0.8
4,244,247	+		GFF4227	0.80	-1.5
4,244,247	+		GFF4227	0.80	-1.1
4,244,247	+		GFF4227	0.80	-0.6
4,244,247	+		GFF4227	0.80	+0.6
4,244,247	+		GFF4227	0.80	-1.5
4,244,247	+		GFF4227	0.80	-0.9
4,244,247	+		GFF4227	0.80	-0.3
4,244,255	-		GFF4227	0.81	+0.4
4,244,255	-		GFF4227	0.81	-1.3
4,244,255	-		GFF4227	0.81	-1.8
4,244,255	-		GFF4227	0.81	-0.4
4,244,255	-		GFF4227	0.81	-0.3
4,244,255	-		GFF4227	0.81	-1.1
4,244,255	-		GFF4227	0.81	-1.2
4,244,255	-		GFF4227	0.81	-2.2
4,244,270	+		GFF4227	0.82	+1.0
4,244,270	+		GFF4227	0.82	-1.7
4,244,278	-		GFF4227	0.83	-0.0
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