Strain Fitness in Sphingobium sp. HT1-2 around GFF4074

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,085,048	+		GFF4072	0.37	+0.5
4,085,048	+		GFF4072	0.37	+1.4
4,085,048	+		GFF4072	0.37	-0.4
4,085,054	-		GFF4072	0.38	-0.8
4,085,056	-		GFF4072	0.38	-0.4
4,085,061	-		GFF4072	0.39	+1.1
4,085,061	-		GFF4072	0.39	+0.3
4,085,075	+		GFF4072	0.40	-1.4
4,085,086	+		GFF4072	0.42	+0.6
4,085,094	-		GFF4072	0.43	+2.3
4,085,095	-		GFF4072	0.43	+2.4
4,085,130	-		GFF4072	0.48	+0.5
4,085,143	+		GFF4072	0.49	-0.7
4,085,148	+		GFF4072	0.50	+0.2
4,085,265	-		GFF4072	0.66	+0.6
4,085,275	-		GFF4072	0.67	-1.5
4,085,280	+		GFF4072	0.68	+0.5
4,085,280	+		GFF4072	0.68	-2.1
4,085,288	-		GFF4072	0.69	+0.2
4,085,336	-		GFF4072	0.75	-0.6
4,085,351	-		GFF4072	0.77	-1.4
4,085,374	+		GFF4072	0.80	-0.3
4,085,380	+		GFF4072	0.81	-1.5
4,085,402	+		GFF4072	0.84	+1.2
4,085,433	+		GFF4072	0.88	-0.2
4,085,470	+				-0.8
4,085,470	+				-0.9
4,085,470	+				+0.7
4,085,470	+				-0.8
4,085,470	+				+0.9
4,085,470	+				-2.2
4,085,470	+				-1.1
4,085,471	-				+1.2
4,085,475	+				+0.5
4,085,478	-				+0.2
4,085,478	-				-0.2
4,085,478	-				-0.3
4,085,478	-				-0.4
4,085,478	-				-0.9
4,085,478	-				-0.4
4,085,502	-				-3.0
4,085,502	-				+0.0
4,085,502	-				+0.1
4,085,507	-				+0.7
4,085,507	-				-0.2
4,085,520	-				-0.7
4,085,525	-				+0.7
4,085,531	-				-0.9
4,085,569	-				+0.9
4,085,574	-				+0.3
4,085,603	+				+2.5
4,085,616	+				-1.2
4,085,616	+				-0.9
4,085,616	+				+2.2
4,085,616	+				+0.6
4,085,616	+				-0.3
4,085,616	+				-0.2
4,085,624	+				-1.3
4,085,625	+				+0.5
4,085,633	-				+0.1
4,085,640	+				-0.0
4,085,681	-		GFF4073	0.20	+0.1
4,085,681	-		GFF4073	0.20	+1.1
4,085,706	+		GFF4073	0.26	+1.0
4,085,706	+		GFF4073	0.26	+1.8
4,085,706	+		GFF4073	0.26	+1.5
4,085,706	+		GFF4073	0.26	+0.5
4,085,706	+		GFF4073	0.26	+0.1
4,085,706	+		GFF4073	0.26	-1.2
4,085,711	+		GFF4073	0.27	+0.9
4,085,714	-		GFF4073	0.28	-0.7
4,085,719	-		GFF4073	0.29	+0.7
4,085,721	+		GFF4073	0.30	-1.9
4,085,721	+		GFF4073	0.30	+0.2
4,085,729	-		GFF4073	0.32	-1.1
4,085,753	+		GFF4073	0.38	-0.9
4,085,762	+		GFF4073	0.40	-0.8
4,085,798	-		GFF4073	0.49	+1.4
4,085,811	+		GFF4073	0.52	+1.1
4,085,822	+		GFF4073	0.55	+0.5
4,085,842	+		GFF4073	0.60	+0.6
4,085,850	-		GFF4073	0.62	+0.4
4,085,874	+		GFF4073	0.68	-0.4
4,085,879	+		GFF4073	0.69	+0.8
4,085,879	+		GFF4073	0.69	-0.7
4,085,879	+		GFF4073	0.69	-0.2
4,085,887	-		GFF4073	0.71	-0.6
4,085,997	+				+0.0
4,085,997	+				+1.0
4,086,005	-				+0.4
4,086,007	-				-0.8
4,086,043	+				-0.7
4,086,076	-		GFF4074	0.12	-0.7
4,086,104	-		GFF4074	0.20	-1.2
4,086,258	-		GFF4074	0.64	-0.6
4,086,263	-		GFF4074	0.65	-1.1
4,086,325	+		GFF4074	0.83	+0.9
4,086,344	+		GFF4074	0.88	-0.7
4,086,371	-				+0.2
4,086,377	+				+1.5
4,086,395	-				-0.9
4,086,405	-				-0.0
4,086,414	-				+1.1
4,086,421	+				-0.7
4,086,508	+				-0.6
4,086,520	+				-0.1
4,086,525	+				-0.5
4,086,528	-				-0.7
4,086,591	+				+1.5
4,086,592	+				+0.3
4,086,592	+				-2.0
4,086,597	+				+0.1
4,086,600	-				+0.1
4,086,600	-				-1.1
4,086,602	+				+0.5
4,086,605	-				-0.4
4,086,659	+		GFF4075	0.13	+0.1
4,086,678	-		GFF4075	0.14	+0.1
4,086,694	+		GFF4075	0.15	+1.5
4,086,835	-		GFF4075	0.26	-0.6
4,086,844	-		GFF4075	0.26	+0.3
4,086,844	-		GFF4075	0.26	+0.6
4,086,859	-		GFF4075	0.28	-0.9
4,086,859	-		GFF4075	0.28	-2.0
4,086,859	-		GFF4075	0.28	+0.1
4,086,885	+		GFF4075	0.30	-2.1
4,086,885	+		GFF4075	0.30	-0.8
4,086,885	+		GFF4075	0.30	-0.2
4,086,893	-		GFF4075	0.30	+0.9
4,086,893	-		GFF4075	0.30	-0.0
4,086,893	-		GFF4075	0.30	-1.2
4,086,893	-		GFF4075	0.30	-1.6
4,086,893	-		GFF4075	0.30	+0.2
4,086,893	-		GFF4075	0.30	-0.1
4,086,893	-		GFF4075	0.30	-0.0
4,086,893	-		GFF4075	0.30	+0.5
4,086,893	-		GFF4075	0.30	+0.9
4,086,903	-		GFF4075	0.31	+0.7
4,086,903	-		GFF4075	0.31	+1.3
4,086,904	-		GFF4075	0.31	-1.7
4,086,904	-		GFF4075	0.31	-1.5
4,086,904	-		GFF4075	0.31	+0.1
4,086,904	-		GFF4075	0.31	+0.1
4,086,916	-		GFF4075	0.32	-1.5
4,086,916	-		GFF4075	0.32	+0.3
4,086,921	-		GFF4075	0.32	+0.9
4,086,921	-		GFF4075	0.32	-0.7
4,086,921	-		GFF4075	0.32	-0.1
4,086,921	-		GFF4075	0.32	-0.2
4,086,921	-		GFF4075	0.32	+1.5
4,086,921	-		GFF4075	0.32	+1.5
4,086,921	-		GFF4075	0.32	+1.7
4,086,921	-		GFF4075	0.32	-1.3
4,086,921	-		GFF4075	0.32	-0.9
4,086,968	+		GFF4075	0.36	+1.0
4,086,968	+		GFF4075	0.36	+1.1
4,086,968	+		GFF4075	0.36	-0.6
4,086,968	+		GFF4075	0.36	-0.1
4,087,014	+		GFF4075	0.39	-1.8
4,087,022	-		GFF4075	0.40	-0.2
4,087,061	+		GFF4075	0.42	+1.8
4,087,061	+		GFF4075	0.42	+0.2
4,087,068	-		GFF4075	0.43	+0.3
4,087,069	-		GFF4075	0.43	-1.2
4,087,069	-		GFF4075	0.43	+0.1
4,087,076	-		GFF4075	0.44	+1.1
4,087,101	-		GFF4075	0.45	+1.5
4,087,103	+		GFF4075	0.46	+0.7
4,087,127	-		GFF4075	0.47	-0.7
4,087,127	-		GFF4075	0.47	-1.1
4,087,127	-		GFF4075	0.47	+0.3
4,087,127	-		GFF4075	0.47	-1.5
4,087,127	-		GFF4075	0.47	+0.7
4,087,127	-		GFF4075	0.47	-0.7
4,087,127	-		GFF4075	0.47	-0.1
4,087,151	+		GFF4075	0.49	-0.2
4,087,172	+		GFF4075	0.51	-0.3
4,087,188	+		GFF4075	0.52	-0.6
4,087,203	-		GFF4075	0.53	+1.2
4,087,235	-		GFF4075	0.55	+0.1
4,087,240	-		GFF4075	0.56	+0.5
4,087,251	+		GFF4075	0.56	-0.1
4,087,251	+		GFF4075	0.56	+2.2
4,087,251	+		GFF4075	0.56	+0.3
4,087,259	-		GFF4075	0.57	-0.1
4,087,259	-		GFF4075	0.57	-1.4
4,087,264	+		GFF4075	0.57	-1.6
4,087,272	-		GFF4075	0.58	-1.1
4,087,310	+		GFF4075	0.61	-0.1
4,087,310	+		GFF4075	0.61	+0.7
4,087,310	+		GFF4075	0.61	-0.1
4,087,310	+		GFF4075	0.61	-0.4
4,087,310	+		GFF4075	0.61	-1.0
4,087,310	+		GFF4075	0.61	-0.1
4,087,310	+		GFF4075	0.61	+0.3
4,087,318	-		GFF4075	0.61	-1.1
4,087,318	-		GFF4075	0.61	+0.8
4,087,318	-		GFF4075	0.61	+0.2
4,087,320	+		GFF4075	0.62	+0.3
4,087,320	+		GFF4075	0.62	-0.5
4,087,320	+		GFF4075	0.62	+0.7
4,087,320	+		GFF4075	0.62	-1.3
4,087,320	+		GFF4075	0.62	+1.3
4,087,320	+		GFF4075	0.62	+0.3
4,087,328	-		GFF4075	0.62	+0.9
4,087,328	-		GFF4075	0.62	-1.4
4,087,334	+		GFF4075	0.63	-0.5
4,087,334	+		GFF4075	0.63	-0.3
4,087,334	+		GFF4075	0.63	+0.2
4,087,334	+		GFF4075	0.63	+0.7
4,087,334	+		GFF4075	0.63	+1.2
4,087,334	+		GFF4075	0.63	+0.2
4,087,334	+		GFF4075	0.63	+0.4