Strain Fitness in Sphingobium sp. HT1-2 around GFF4057

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,071,820	+		GFF4056	0.74	-1.7
4,071,821	+		GFF4056	0.74	+0.9
4,071,821	+		GFF4056	0.74	+0.1
4,071,823	-		GFF4056	0.74	-0.3
4,071,825	+		GFF4056	0.74	-0.9
4,071,825	+		GFF4056	0.74	-0.4
4,071,825	+		GFF4056	0.74	+1.4
4,071,825	+		GFF4056	0.74	-0.9
4,071,828	-		GFF4056	0.74	-0.4
4,071,828	-		GFF4056	0.74	-1.1
4,071,831	+		GFF4056	0.74	-1.2
4,071,834	-		GFF4056	0.74	-0.8
4,071,839	-		GFF4056	0.74	-1.1
4,071,844	-		GFF4056	0.74	+0.2
4,071,844	-		GFF4056	0.74	-1.2
4,071,847	+		GFF4056	0.74	-1.1
4,071,865	-		GFF4056	0.75	-2.2
4,071,895	+		GFF4056	0.76	+1.0
4,071,896	+		GFF4056	0.76	-0.9
4,071,896	+		GFF4056	0.76	-0.7
4,071,896	+		GFF4056	0.76	-2.5
4,071,896	+		GFF4056	0.76	+1.3
4,071,896	+		GFF4056	0.76	+0.6
4,071,896	+		GFF4056	0.76	-1.9
4,071,896	+		GFF4056	0.76	+0.6
4,071,917	+		GFF4056	0.76	-0.8
4,071,925	-		GFF4056	0.77	-0.3
4,071,925	-		GFF4056	0.77	+0.7
4,071,925	-		GFF4056	0.77	+0.3
4,071,938	-		GFF4056	0.77	-0.3
4,071,954	+		GFF4056	0.78	+0.2
4,071,976	-		GFF4056	0.78	-1.2
4,071,993	+		GFF4056	0.79	-0.3
4,072,001	+		GFF4056	0.79	+1.7
4,072,007	-		GFF4056	0.79	-0.1
4,072,012	+		GFF4056	0.79	-1.3
4,072,012	+		GFF4056	0.79	-0.8
4,072,020	-		GFF4056	0.80	-1.5
4,072,020	-		GFF4056	0.80	-0.0
4,072,022	-		GFF4056	0.80	-1.1
4,072,044	-		GFF4056	0.80	-0.4
4,072,050	+		GFF4056	0.80	-1.6
4,072,140	+		GFF4056	0.83	-1.9
4,072,140	+		GFF4056	0.83	-0.6
4,072,140	-		GFF4056	0.83	-0.3
4,072,148	-		GFF4056	0.83	-0.4
4,072,148	-		GFF4056	0.83	-0.2
4,072,148	-		GFF4056	0.83	-0.2
4,072,150	-		GFF4056	0.83	+0.4
4,072,158	-		GFF4056	0.84	-0.6
4,072,167	-		GFF4056	0.84	-0.0
4,072,180	+		GFF4056	0.84	+0.1
4,072,190	-		GFF4056	0.85	+0.2
4,072,199	-		GFF4056	0.85	+1.3
4,072,213	-		GFF4056	0.85	-0.3
4,072,221	+		GFF4056	0.86	-0.5
4,072,222	+		GFF4056	0.86	-0.1
4,072,222	+		GFF4056	0.86	-1.4
4,072,222	+		GFF4056	0.86	+0.8
4,072,222	+		GFF4056	0.86	-0.8
4,072,226	+		GFF4056	0.86	-1.2
4,072,230	-		GFF4056	0.86	+0.8
4,072,253	+		GFF4056	0.86	+0.4
4,072,260	-		GFF4056	0.87	+0.6
4,072,288	-		GFF4056	0.88	-1.7
4,072,293	+		GFF4056	0.88	+0.6
4,072,301	-		GFF4056	0.88	-1.5
4,072,301	-		GFF4056	0.88	-1.8
4,072,309	-		GFF4056	0.88	-0.4
4,072,348	+		GFF4056	0.89	-2.4
4,072,353	-		GFF4056	0.89	-1.1
4,072,353	-		GFF4056	0.89	+0.4
4,072,353	-		GFF4056	0.89	+2.3
4,072,355	+		GFF4056	0.90	-0.5
4,072,355	+		GFF4056	0.90	-0.4
4,072,361	+		GFF4056	0.90	+0.1
4,072,396	+				+0.9
4,072,396	+				-1.0
4,072,404	-				-1.9
4,072,404	-				-0.7
4,072,404	-				+0.6
4,072,405	+				-0.0
4,072,405	+				-0.4
4,072,413	-				-1.3
4,072,472	+				-2.0
4,072,477	+				-1.0
4,072,485	-				-1.7
4,072,485	-				+0.1
4,072,485	-				-0.5
4,072,485	-				-0.1
4,072,503	+				-1.9
4,072,510	+				-1.0
4,072,532	+				-0.1
4,072,532	+				-0.0
4,072,532	+				-1.7
4,072,540	-				+1.6
4,072,540	-				-1.6
4,072,576	+				-0.4
4,072,581	+				+0.1
4,072,581	+				+1.1
4,072,586	+				+0.1
4,072,586	+				-0.8
4,072,589	-				+1.0
4,072,589	-				-0.1
4,072,589	-				-1.9
4,072,589	-				-1.7
4,072,589	-				-0.5
4,072,589	-				-0.9
4,072,589	-				-0.6
4,072,591	+				-1.6
4,072,596	+				-1.4
4,072,599	-				-0.6
4,072,604	-				+1.2
4,072,636	-				+0.7
4,072,638	+				+0.1
4,072,646	-				-0.8
4,072,665	+				-0.8
4,072,665	+				-1.7
4,072,665	+				-1.6
4,072,665	+				+0.2
4,072,665	+				-0.5
4,072,665	+				-1.3
4,072,665	+				+0.1
4,072,665	+				-2.1
4,072,673	-				-1.0
4,072,673	-				-0.4
4,072,673	-				+0.6
4,072,673	-				+1.0
4,072,673	-				-0.4
4,072,673	-				+0.3
4,072,697	-				-1.3
4,072,698	-				-0.5
4,072,705	-				-0.8
4,072,711	+				-0.7
4,072,729	-				-0.8
4,072,769	+				-0.2
4,072,780	+				-0.1
4,072,792	+				-0.4
4,072,811	-				-0.6
4,072,811	-				+1.4
4,072,812	-				-1.1
4,072,819	-				-0.8
4,072,821	+				+1.3
4,072,821	+				+0.6
4,072,824	+				+0.1
4,072,826	+				+0.2
4,072,829	-				-0.8
4,072,832	-				-0.7
4,072,834	-				-1.7
4,072,834	-				-1.1
4,072,834	-				-1.8
4,072,834	-				-0.7
4,072,841	+				-1.6
4,072,849	-				-1.8
4,072,863	+				-1.0
4,072,863	+				-2.1
4,072,876	-		GFF4057	0.12	-0.0
4,072,906	+		GFF4057	0.16	-0.0
4,072,907	+		GFF4057	0.16	-0.3
4,072,921	-		GFF4057	0.18	-0.7
4,072,932	+		GFF4057	0.19	+1.0
4,072,937	+		GFF4057	0.20	-0.7
4,072,939	-		GFF4057	0.20	-1.1
4,072,943	-		GFF4057	0.21	-1.2
4,072,970	-		GFF4057	0.24	-1.1
4,072,979	+		GFF4057	0.25	+1.1
4,073,022	-		GFF4057	0.31	-1.3
4,073,030	-		GFF4057	0.32	+0.2
4,073,034	+		GFF4057	0.33	-1.7
4,073,044	-		GFF4057	0.34	-1.6
4,073,044	-		GFF4057	0.34	+0.1
4,073,054	+		GFF4057	0.35	-0.7
4,073,057	-		GFF4057	0.36	-1.1
4,073,063	+		GFF4057	0.37	-0.8
4,073,063	+		GFF4057	0.37	-1.0
4,073,063	+		GFF4057	0.37	+1.0
4,073,071	-		GFF4057	0.38	-0.9
4,073,071	-		GFF4057	0.38	-0.1
4,073,076	-		GFF4057	0.38	-1.0
4,073,079	-		GFF4057	0.39	+1.3
4,073,080	+		GFF4057	0.39	+1.1
4,073,086	+		GFF4057	0.40	+0.2
4,073,094	-		GFF4057	0.41	-0.7
4,073,110	+		GFF4057	0.43	-1.2
4,073,110	+		GFF4057	0.43	+0.6
4,073,110	+		GFF4057	0.43	-1.0
4,073,198	+		GFF4057	0.55	+1.1
4,073,206	-		GFF4057	0.56	+0.4
4,073,230	+		GFF4057	0.59	-1.2
4,073,249	+		GFF4057	0.61	-0.2
4,073,249	+		GFF4057	0.61	-2.2
4,073,249	+		GFF4057	0.61	-0.7
4,073,308	+		GFF4057	0.69	+1.1
4,073,323	-		GFF4057	0.71	-1.1
4,073,341	-		GFF4057	0.74	-0.4
4,073,341	-		GFF4057	0.74	-0.6
4,073,367	+		GFF4057	0.77	-2.0
4,073,380	-		GFF4057	0.79	-1.7
4,073,392	+		GFF4057	0.80	-1.3
4,073,405	-		GFF4057	0.82	-0.0
4,073,433	-		GFF4057	0.86	-2.3
4,073,471	-				+0.2
4,073,482	-				-0.6
4,073,494	-				-1.7
4,073,519	+				-0.7
4,073,575	-				-0.4
4,073,578	+				-0.8
4,073,612	+				-0.6
4,073,616	+				+0.4
4,073,626	+				-1.3
4,073,650	-				+0.7
4,073,662	+				+0.4
4,073,670	-				-0.1
4,073,672	+				-0.9
4,073,674	+				-1.5
4,073,675	-				-1.0
4,073,682	-		GFF4058	0.10	+0.1
4,073,682	-		GFF4058	0.10	-0.5
4,073,711	-		GFF4058	0.13	-0.3
4,073,760	+		GFF4058	0.17	-1.7
4,073,760	+		GFF4058	0.17	-1.9
4,073,760	+		GFF4058	0.17	-1.3
4,073,768	-		GFF4058	0.17	-0.3
4,073,782	-		GFF4058	0.18	-0.0
4,073,782	-		GFF4058	0.18	-1.0
4,073,795	+		GFF4058	0.19	-0.6
4,073,812	+		GFF4058	0.21	-0.9
4,073,813	-		GFF4058	0.21	-0.8
4,073,814	+		GFF4058	0.21	-0.4
4,073,818	-		GFF4058	0.21	+0.1
4,073,829	-		GFF4058	0.22	-0.9
4,073,837	-		GFF4058	0.22	-1.2
4,073,846	-		GFF4058	0.23	-0.6
4,073,866	+		GFF4058	0.25	-1.2
4,073,874	-		GFF4058	0.25	+0.1
4,073,884	-		GFF4058	0.26	-0.6
4,073,891	+		GFF4058	0.27	-0.5
4,073,891	+		GFF4058	0.27	-0.7
4,073,891	+		GFF4058	0.27	+1.2
4,073,891	+		GFF4058	0.27	-1.0
4,073,891	+		GFF4058	0.27	-1.2
4,073,894	-		GFF4058	0.27	+0.7
4,073,899	-		GFF4058	0.27	-0.8
4,073,899	-		GFF4058	0.27	+0.2
4,073,899	-		GFF4058	0.27	+0.4
4,073,924	-		GFF4058	0.29	-1.0
4,073,941	-		GFF4058	0.31	-0.3
4,073,952	-		GFF4058	0.31	+0.3
4,073,965	+		GFF4058	0.32	-0.4
4,073,965	+		GFF4058	0.32	-0.8
4,073,978	-		GFF4058	0.33	-0.5
4,073,980	+		GFF4058	0.34	-1.1
4,074,018	+		GFF4058	0.37	-1.2
4,074,048	+		GFF4058	0.39	-0.2
4,074,049	+		GFF4058	0.39	+0.7
4,074,049	+		GFF4058	0.39	+0.9
4,074,049	+		GFF4058	0.39	-1.1
4,074,056	-		GFF4058	0.39	-1.5
4,074,056	-		GFF4058	0.39	-0.4
4,074,056	-		GFF4058	0.39	+0.2
4,074,061	-		GFF4058	0.40	+0.6
4,074,062	-		GFF4058	0.40	-2.5
4,074,101	+		GFF4058	0.43	-0.8
4,074,110	+		GFF4058	0.44	-1.9
4,074,112	+		GFF4058	0.44	-2.0
4,074,119	-		GFF4058	0.44	-0.9
4,074,127	-		GFF4058	0.45	-0.9
4,074,149	-		GFF4058	0.47	-1.4
4,074,151	+		GFF4058	0.47	-0.2
4,074,153	+		GFF4058	0.47	-0.4
4,074,182	-		GFF4058	0.49	+1.1
4,074,192	+		GFF4058	0.50	+1.0
4,074,196	-		GFF4058	0.50	-0.4
4,074,203	+		GFF4058	0.51	-0.3
4,074,214	-		GFF4058	0.52	-1.6
4,074,216	+		GFF4058	0.52	-1.9
4,074,225	+		GFF4058	0.53	-1.0
4,074,233	-		GFF4058	0.53	-1.3
4,074,233	-		GFF4058	0.53	-0.5
4,074,289	-		GFF4058	0.58	+1.7
4,074,294	+		GFF4058	0.58	+0.1
4,074,294	+		GFF4058	0.58	-0.8
4,074,302	-		GFF4058	0.59	-0.1
4,074,302	-		GFF4058	0.59	+1.6
4,074,376	+		GFF4058	0.64	-0.2
4,074,376	+		GFF4058	0.64	-2.1
4,074,387	+		GFF4058	0.65	-0.5
4,074,390	-		GFF4058	0.65	+0.6
4,074,394	+		GFF4058	0.66	-1.1
4,074,394	+		GFF4058	0.66	-0.2
4,074,398	+		GFF4058	0.66	+0.1
4,074,398	+		GFF4058	0.66	-0.4
4,074,402	-		GFF4058	0.66	+0.3
4,074,424	-		GFF4058	0.68	-1.7
4,074,452	+		GFF4058	0.70	-0.2
4,074,472	-		GFF4058	0.72	+0.6
4,074,475	+		GFF4058	0.72	-0.6
4,074,490	+		GFF4058	0.73	-1.2
4,074,491	-		GFF4058	0.73	+0.9
4,074,498	-		GFF4058	0.74	-0.9
4,074,498	-		GFF4058	0.74	-0.1
4,074,513	+		GFF4058	0.75	+0.4