Strain Fitness in Sphingobium sp. HT1-2 around GFF4046

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,058,740	+				+0.5
4,058,769	+				+0.1
4,058,792	+				+0.5
4,058,792	+				-0.3
4,058,799	+				-0.6
4,058,800	-				+1.3
4,058,832	-		GFF4044	0.22	+0.5
4,058,871	-		GFF4044	0.37	-0.9
4,058,877	+		GFF4044	0.40	-0.4
4,058,879	+		GFF4044	0.40	+0.4
4,058,879	+		GFF4044	0.40	-0.8
4,058,880	-		GFF4044	0.41	+1.5
4,058,880	-		GFF4044	0.41	-1.4
4,058,880	-		GFF4044	0.41	-0.2
4,058,887	-		GFF4044	0.43	+1.3
4,058,892	+		GFF4044	0.45	-1.7
4,058,966	+		GFF4044	0.74	+0.2
4,058,969	-		GFF4044	0.75	-0.2
4,058,974	-		GFF4044	0.77	-1.2
4,058,984	+		GFF4044	0.81	-0.5
4,058,984	+		GFF4044	0.81	+2.1
4,058,984	+		GFF4044	0.81	-1.7
4,058,992	-		GFF4044	0.84	-0.6
4,059,038	-				-0.2
4,059,115	-		GFF4045	0.12	-0.0
4,059,132	+		GFF4045	0.15	-0.7
4,059,145	-		GFF4045	0.17	+0.4
4,059,150	-		GFF4045	0.17	+0.2
4,059,158	+		GFF4045	0.18	+1.2
4,059,177	+		GFF4045	0.21	+0.3
4,059,215	-		GFF4045	0.27	-0.4
4,059,217	+		GFF4045	0.27	-0.5
4,059,223	+		GFF4045	0.28	+1.1
4,059,229	+		GFF4045	0.29	+0.8
4,059,229	+		GFF4045	0.29	+1.2
4,059,231	-		GFF4045	0.29	+0.2
4,059,237	-		GFF4045	0.30	-1.4
4,059,237	-		GFF4045	0.30	+0.1
4,059,237	-		GFF4045	0.30	-0.5
4,059,270	-		GFF4045	0.34	-0.4
4,059,284	+		GFF4045	0.36	-1.1
4,059,313	-		GFF4045	0.41	+0.7
4,059,346	-		GFF4045	0.45	+1.4
4,059,359	+		GFF4045	0.47	+0.2
4,059,374	-		GFF4045	0.49	+0.2
4,059,374	-		GFF4045	0.49	+1.5
4,059,403	-		GFF4045	0.54	-0.9
4,059,408	-		GFF4045	0.54	+0.5
4,059,408	-		GFF4045	0.54	-0.9
4,059,408	-		GFF4045	0.54	+0.4
4,059,408	-		GFF4045	0.54	+0.2
4,059,430	+		GFF4045	0.57	-1.2
4,059,438	-		GFF4045	0.59	-1.1
4,059,473	+		GFF4045	0.64	-0.3
4,059,503	-		GFF4045	0.68	-0.6
4,059,508	+		GFF4045	0.69	-0.7
4,059,516	-		GFF4045	0.70	+0.4
4,059,528	+		GFF4045	0.71	-1.2
4,059,529	+		GFF4045	0.72	-1.3
4,059,547	+		GFF4045	0.74	-1.7
4,059,574	-		GFF4045	0.78	-0.6
4,059,626	-		GFF4045	0.85	-0.7
4,059,633	-		GFF4045	0.86	+0.1
4,059,712	-				+1.2
4,059,716	+				+0.7
4,059,726	+				+0.1
4,059,773	-				-0.8
4,059,780	+				-0.7
4,059,788	-				-0.5
4,059,806	-				+0.0
4,059,844	+		GFF4046	0.11	-0.2
4,059,859	-		GFF4046	0.13	-0.3
4,059,859	-		GFF4046	0.13	-0.3
4,059,859	-		GFF4046	0.13	+0.3
4,059,898	+		GFF4046	0.17	-0.9
4,059,955	+		GFF4046	0.23	-0.7
4,060,012	-		GFF4046	0.28	-0.6
4,060,012	-		GFF4046	0.28	-0.5
4,060,014	+		GFF4046	0.29	+0.3
4,060,028	-		GFF4046	0.30	-1.6
4,060,030	+		GFF4046	0.30	-0.8
4,060,030	+		GFF4046	0.30	+2.2
4,060,030	+		GFF4046	0.30	-1.0
4,060,038	-		GFF4046	0.31	+0.7
4,060,038	-		GFF4046	0.31	+1.0
4,060,051	+		GFF4046	0.32	-0.2
4,060,051	+		GFF4046	0.32	-1.2
4,060,059	-		GFF4046	0.33	+0.7
4,060,059	-		GFF4046	0.33	-0.6
4,060,059	-		GFF4046	0.33	-0.5
4,060,059	-		GFF4046	0.33	+0.7
4,060,059	-		GFF4046	0.33	-0.0
4,060,059	-		GFF4046	0.33	+1.0
4,060,089	+		GFF4046	0.36	-0.7
4,060,090	+		GFF4046	0.36	-0.7
4,060,128	+		GFF4046	0.40	-0.6
4,060,189	-		GFF4046	0.46	+0.9
4,060,200	+		GFF4046	0.48	-0.5
4,060,200	+		GFF4046	0.48	+0.2
4,060,205	+		GFF4046	0.48	-0.5
4,060,205	+		GFF4046	0.48	-0.0
4,060,213	-		GFF4046	0.49	+0.5
4,060,213	-		GFF4046	0.49	-0.4
4,060,213	-		GFF4046	0.49	-0.4
4,060,213	-		GFF4046	0.49	+0.7
4,060,213	-		GFF4046	0.49	+0.2
4,060,213	-		GFF4046	0.49	-0.2
4,060,217	+		GFF4046	0.49	+1.2
4,060,222	+		GFF4046	0.50	+0.7
4,060,223	-		GFF4046	0.50	-0.6
4,060,230	-		GFF4046	0.51	+0.5
4,060,230	-		GFF4046	0.51	+0.3
4,060,247	+		GFF4046	0.52	-0.1
4,060,249	-		GFF4046	0.52	-0.8
4,060,255	-		GFF4046	0.53	+1.0
4,060,258	+		GFF4046	0.53	-0.7
4,060,258	+		GFF4046	0.53	+1.7
4,060,266	-		GFF4046	0.54	-1.8
4,060,277	+		GFF4046	0.55	+0.8
4,060,291	+		GFF4046	0.57	+1.5
4,060,291	+		GFF4046	0.57	+0.3
4,060,299	-		GFF4046	0.58	-0.4
4,060,316	+		GFF4046	0.59	-0.4
4,060,326	-		GFF4046	0.60	+2.0
4,060,327	+		GFF4046	0.60	+0.2
4,060,335	-		GFF4046	0.61	-1.8
4,060,335	-		GFF4046	0.61	+0.6
4,060,348	+		GFF4046	0.63	-0.5
4,060,349	+		GFF4046	0.63	+0.7
4,060,350	-		GFF4046	0.63	+0.3
4,060,356	-		GFF4046	0.63	+0.0
4,060,374	+		GFF4046	0.65	-0.5
4,060,374	-		GFF4046	0.65	+0.0
4,060,387	-		GFF4046	0.67	-1.0
4,060,435	-		GFF4046	0.71	+0.8
4,060,480	+		GFF4046	0.76	+0.5
4,060,505	+		GFF4046	0.79	-0.0
4,060,510	+		GFF4046	0.79	+0.0
4,060,571	-		GFF4046	0.85	+1.5
4,060,571	-		GFF4046	0.85	-1.8
4,060,590	-		GFF4046	0.87	+1.1
4,060,597	-		GFF4046	0.88	+0.4
4,060,604	+		GFF4046	0.89	+0.4
4,060,604	+		GFF4046	0.89	+0.6
4,060,604	+		GFF4046	0.89	+1.0
4,060,604	+		GFF4046	0.89	+1.4
4,060,604	+		GFF4046	0.89	+2.4
4,060,604	+		GFF4046	0.89	+1.0
4,060,610	+		GFF4046	0.89	+1.2
4,060,612	-		GFF4046	0.90	+1.0
4,060,612	-		GFF4046	0.90	+1.0
4,060,612	-		GFF4046	0.90	+1.0
4,060,618	-				+1.2
4,060,618	-				+1.5
4,060,632	+				-0.7
4,060,632	+				+0.4
4,060,632	+				-0.1
4,060,632	+				+0.9
4,060,640	-				+1.0
4,060,640	-				+1.0
4,060,640	-				+1.4
4,060,656	+				-0.4
4,060,657	-				+1.2
4,060,657	-				+1.9
4,060,668	+				-0.1
4,060,668	+				-0.0
4,060,669	+				-0.7
4,060,677	-				+0.1
4,060,677	-				+0.0
4,060,680	+				+1.0
4,060,688	-				+0.9
4,060,688	-				+1.2
4,060,688	-				+0.4
4,060,737	-				+0.7
4,060,738	-				-1.5
4,060,739	+				+0.2
4,060,747	-		GFF4047	0.11	+0.8
4,060,747	-		GFF4047	0.11	+0.9
4,060,747	-		GFF4047	0.11	+0.1
4,060,747	-		GFF4047	0.11	+1.7
4,060,759	-		GFF4047	0.13	+1.7
4,060,760	-		GFF4047	0.13	-0.2
4,060,767	+		GFF4047	0.14	+0.3
4,060,792	+		GFF4047	0.18	+1.1
4,060,792	+		GFF4047	0.18	-0.5
4,060,792	+		GFF4047	0.18	-1.1
4,060,792	+		GFF4047	0.18	-0.9
4,060,792	+		GFF4047	0.18	+1.0
4,060,800	-		GFF4047	0.19	+0.0
4,060,800	-		GFF4047	0.19	-0.4
4,060,800	-		GFF4047	0.19	-2.2
4,060,800	-		GFF4047	0.19	+1.1
4,060,807	+		GFF4047	0.20	+0.7
4,060,824	+		GFF4047	0.23	+1.0
4,060,827	-		GFF4047	0.24	+0.7
4,060,918	+		GFF4047	0.39	+0.3
4,060,970	+		GFF4047	0.47	+0.0
4,060,983	+		GFF4047	0.50	-1.9
4,061,036	+		GFF4047	0.58	+0.6
4,061,043	+		GFF4047	0.59	+0.5
4,061,043	-		GFF4047	0.59	+0.0
4,061,044	-		GFF4047	0.60	+0.5
4,061,094	+		GFF4047	0.68	-0.7
4,061,102	-		GFF4047	0.69	+1.5
4,061,126	-		GFF4047	0.73	+0.1
4,061,131	-		GFF4047	0.74	-0.9
4,061,162	-		GFF4047	0.79	-0.1
4,061,162	-		GFF4047	0.79	+0.3
4,061,178	-		GFF4047	0.82	-0.5
4,061,220	+		GFF4047	0.89	-0.9
4,061,220	+		GFF4047	0.89	-0.2
4,061,223	-		GFF4047	0.89	+0.3
4,061,228	-				+0.6
4,061,228	-				+0.2
4,061,251	+				+0.0
4,061,251	+				+1.5
4,061,259	-				-0.0
4,061,269	-				+1.0
4,061,277	+				-0.8
4,061,281	-				+0.7
4,061,287	-				-1.2
4,061,287	-				+0.7
4,061,373	-				-0.6
4,061,505	-		GFF4048	0.22	-0.6
4,061,505	-		GFF4048	0.22	-0.0
4,061,505	-		GFF4048	0.22	-0.9
4,061,507	+		GFF4048	0.23	-0.0
4,061,517	+		GFF4048	0.28	-0.6
4,061,569	+		GFF4048	0.54	-0.0
4,061,592	-		GFF4048	0.66	+1.0
4,061,617	+		GFF4048	0.78	-0.4
4,061,617	+		GFF4048	0.78	-0.2
4,061,617	+		GFF4048	0.78	-2.3
4,061,617	+		GFF4048	0.78	+0.3
4,061,621	+		GFF4048	0.80	+2.2
4,061,636	-		GFF4048	0.88	+0.5
4,061,641	+				-0.7
4,061,641	+				-1.2
4,061,641	+				+0.5
4,061,641	+				+0.5
4,061,641	+				-1.1
4,061,649	-				-1.7
4,061,659	+				-0.8
4,061,668	-				+0.5
4,061,695	+				-0.1