Strain Fitness in Sphingobium sp. HT1-2 around GFF401

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF400 and GFF401 are separated by 70 nucleotidesGFF401 and GFF402 are separated by 49 nucleotidesGFF402 and GFF403 are separated by 178 nucleotides GFF400 - Possible NADH oxidoreductase, at 388,700 to 389,812 GFF400 GFF401 - Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11), at 389,883 to 390,494 GFF401 GFF402 - hypothetical protein, at 390,544 to 390,837 GFF402 GFF403 - Aspartate aminotransferase (EC 2.6.1.1), at 391,016 to 392,257 GFF403 Position (kb) 389 390 391Strain fitness (log2 ratio) -2 -1 0 1 2at 388.921 kb on + strand, within GFF400at 388.929 kb on - strand, within GFF400at 388.970 kb on + strand, within GFF400at 388.971 kb on + strand, within GFF400at 388.971 kb on + strand, within GFF400at 388.979 kb on - strand, within GFF400at 388.989 kb on - strand, within GFF400at 389.006 kb on + strand, within GFF400at 389.014 kb on - strand, within GFF400at 389.014 kb on - strand, within GFF400at 389.025 kb on + strand, within GFF400at 389.025 kb on + strand, within GFF400at 389.030 kb on - strand, within GFF400at 389.035 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.156 kb on + strand, within GFF400at 389.164 kb on - strand, within GFF400at 389.173 kb on + strand, within GFF400at 389.190 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.217 kb on + strand, within GFF400at 389.225 kb on - strand, within GFF400at 389.225 kb on - strand, within GFF400at 389.235 kb on - strand, within GFF400at 389.272 kb on + strand, within GFF400at 389.273 kb on + strand, within GFF400at 389.274 kb on - strand, within GFF400at 389.279 kb on - strand, within GFF400at 389.280 kb on - strand, within GFF400at 389.289 kb on + strand, within GFF400at 389.294 kb on + strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.297 kb on - strand, within GFF400at 389.302 kb on - strand, within GFF400at 389.303 kb on + strand, within GFF400at 389.306 kb on + strand, within GFF400at 389.372 kb on + strand, within GFF400at 389.452 kb on - strand, within GFF400at 389.463 kb on - strand, within GFF400at 389.470 kb on - strand, within GFF400at 389.477 kb on + strand, within GFF400at 389.530 kb on + strand, within GFF400at 389.566 kb on + strand, within GFF400at 389.631 kb on - strand, within GFF400at 389.659 kb on + strand, within GFF400at 389.673 kb on + strand, within GFF400at 389.678 kb on + strand, within GFF400at 389.686 kb on - strand, within GFF400at 389.696 kb on - strand, within GFF400at 389.696 kb on - strand, within GFF400at 389.715 kb on - strandat 389.715 kb on - strandat 389.715 kb on - strandat 389.715 kb on - strandat 389.720 kb on - strandat 389.732 kb on + strandat 389.732 kb on + strandat 389.732 kb on + strandat 389.742 kb on + strandat 389.844 kb on - strandat 389.905 kb on - strandat 389.907 kb on - strandat 389.913 kb on + strandat 389.913 kb on + strandat 389.926 kb on - strandat 389.931 kb on - strandat 389.932 kb on + strandat 389.932 kb on + strandat 389.933 kb on + strandat 389.940 kb on - strandat 389.947 kb on - strand, within GFF401at 389.951 kb on - strand, within GFF401at 389.953 kb on - strand, within GFF401at 389.960 kb on + strand, within GFF401at 389.968 kb on - strand, within GFF401at 389.968 kb on - strand, within GFF401at 389.994 kb on + strand, within GFF401at 390.025 kb on - strand, within GFF401at 390.026 kb on - strand, within GFF401at 390.030 kb on + strand, within GFF401at 390.034 kb on + strand, within GFF401at 390.068 kb on + strand, within GFF401at 390.086 kb on + strand, within GFF401at 390.094 kb on - strand, within GFF401at 390.094 kb on - strand, within GFF401at 390.099 kb on - strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.116 kb on + strand, within GFF401at 390.119 kb on - strand, within GFF401at 390.135 kb on - strand, within GFF401at 390.216 kb on + strand, within GFF401at 390.224 kb on - strand, within GFF401at 390.248 kb on + strand, within GFF401at 390.248 kb on + strand, within GFF401at 390.248 kb on + strand, within GFF401at 390.266 kb on - strand, within GFF401at 390.389 kb on + strand, within GFF401at 390.497 kb on - strandat 390.518 kb on + strandat 390.525 kb on + strandat 390.595 kb on + strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.603 kb on - strand, within GFF402at 390.756 kb on - strand, within GFF402at 390.760 kb on + strand, within GFF402at 390.768 kb on - strand, within GFF402at 390.771 kb on + strand, within GFF402at 391.029 kb on + strandat 391.120 kb on - strandat 391.125 kb on + strandat 391.142 kb on - strand, within GFF403at 391.279 kb on - strand, within GFF403at 391.287 kb on + strand, within GFF403at 391.302 kb on - strand, within GFF403at 391.332 kb on + strand, within GFF403at 391.399 kb on + strand, within GFF403at 391.453 kb on + strand, within GFF403at 391.456 kb on - strand, within GFF403at 391.459 kb on - strand, within GFF403

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
remove
388,921 + GFF400 0.20 -0.7
388,929 - GFF400 0.21 +0.5
388,970 + GFF400 0.24 -0.5
388,971 + GFF400 0.24 -1.5
388,971 + GFF400 0.24 -0.2
388,979 - GFF400 0.25 -0.2
388,989 - GFF400 0.26 -0.9
389,006 + GFF400 0.27 +0.3
389,014 - GFF400 0.28 -0.5
389,014 - GFF400 0.28 +0.3
389,025 + GFF400 0.29 -1.6
389,025 + GFF400 0.29 -0.1
389,030 - GFF400 0.30 +1.1
389,035 + GFF400 0.30 -1.1
389,156 + GFF400 0.41 +1.6
389,156 + GFF400 0.41 -0.5
389,164 - GFF400 0.42 +0.3
389,173 + GFF400 0.42 -0.5
389,190 + GFF400 0.44 -1.6
389,217 + GFF400 0.46 +1.0
389,217 + GFF400 0.46 -0.4
389,217 + GFF400 0.46 -0.6
389,217 + GFF400 0.46 +0.7
389,225 - GFF400 0.47 +0.3
389,225 - GFF400 0.47 +0.5
389,235 - GFF400 0.48 -0.7
389,272 + GFF400 0.51 +0.2
389,273 + GFF400 0.51 -0.1
389,274 - GFF400 0.52 -0.1
389,279 - GFF400 0.52 -1.0
389,280 - GFF400 0.52 +0.6
389,289 + GFF400 0.53 +0.0
389,294 + GFF400 0.53 -1.5
389,297 - GFF400 0.54 +0.3
389,297 - GFF400 0.54 +1.1
389,297 - GFF400 0.54 +0.6
389,302 - GFF400 0.54 -1.5
389,303 + GFF400 0.54 -0.2
389,306 + GFF400 0.54 -1.3
389,372 + GFF400 0.60 -0.6
389,452 - GFF400 0.68 -0.7
389,463 - GFF400 0.69 -1.7
389,470 - GFF400 0.69 -0.4
389,477 + GFF400 0.70 -2.2
389,530 + GFF400 0.75 -2.0
389,566 + GFF400 0.78 +0.9
389,631 - GFF400 0.84 +0.3
389,659 + GFF400 0.86 +0.5
389,673 + GFF400 0.87 +1.5
389,678 + GFF400 0.88 -0.4
389,686 - GFF400 0.89 +1.8
389,696 - GFF400 0.89 -0.8
389,696 - GFF400 0.89 -0.7
389,715 - -0.7
389,715 - -0.2
389,715 - +1.2
389,715 - +0.2
389,720 - +0.8
389,732 + -0.6
389,732 + -0.5
389,732 + +1.8
389,742 + +0.6
389,844 - -1.1
389,905 - +0.2
389,907 - +0.1
389,913 + +1.5
389,913 + -0.1
389,926 - -0.1
389,931 - +0.4
389,932 + +1.8
389,932 + +0.9
389,933 + -0.2
389,940 - -0.8
389,947 - GFF401 0.10 -2.1
389,951 - GFF401 0.11 -0.1
389,953 - GFF401 0.11 +0.6
389,960 + GFF401 0.13 +0.2
389,968 - GFF401 0.14 +0.5
389,968 - GFF401 0.14 +1.8
389,994 + GFF401 0.18 +0.2
390,025 - GFF401 0.23 -0.5
390,026 - GFF401 0.23 -0.4
390,030 + GFF401 0.24 -1.3
390,034 + GFF401 0.25 -0.1
390,068 + GFF401 0.30 +0.7
390,086 + GFF401 0.33 +1.5
390,094 - GFF401 0.34 +0.2
390,094 - GFF401 0.34 -0.7
390,099 - GFF401 0.35 +1.9
390,106 + GFF401 0.36 -0.4
390,106 + GFF401 0.36 -1.4
390,106 + GFF401 0.36 -0.3
390,106 + GFF401 0.36 -0.3
390,106 + GFF401 0.36 -1.6
390,106 + GFF401 0.36 +1.5
390,106 + GFF401 0.36 +0.3
390,106 + GFF401 0.36 +0.2
390,106 + GFF401 0.36 -1.4
390,106 + GFF401 0.36 -0.2
390,106 + GFF401 0.36 +0.5
390,106 + GFF401 0.36 -0.3
390,114 - GFF401 0.38 -1.6
390,114 - GFF401 0.38 -1.0
390,114 - GFF401 0.38 -0.8
390,114 - GFF401 0.38 -1.9
390,114 - GFF401 0.38 +0.1
390,114 - GFF401 0.38 -0.5
390,114 - GFF401 0.38 +1.0
390,114 - GFF401 0.38 -0.4
390,114 - GFF401 0.38 +0.3
390,114 - GFF401 0.38 +0.4
390,114 - GFF401 0.38 -0.4
390,114 - GFF401 0.38 +0.3
390,114 - GFF401 0.38 -1.0
390,114 - GFF401 0.38 -0.7
390,116 + GFF401 0.38 +0.8
390,119 - GFF401 0.39 -2.7
390,135 - GFF401 0.41 -2.2
390,216 + GFF401 0.54 +0.5
390,224 - GFF401 0.56 -1.1
390,248 + GFF401 0.60 +0.7
390,248 + GFF401 0.60 +0.2
390,248 + GFF401 0.60 +0.2
390,266 - GFF401 0.63 +0.3
390,389 + GFF401 0.83 -0.7
390,497 - +2.5
390,518 + -0.2
390,525 + +0.9
390,595 + GFF402 0.17 +0.5
390,598 - GFF402 0.18 +0.9
390,598 - GFF402 0.18 -0.1
390,598 - GFF402 0.18 -0.4
390,598 - GFF402 0.18 +0.4
390,603 - GFF402 0.20 +1.1
390,756 - GFF402 0.72 -1.7
390,760 + GFF402 0.73 -0.7
390,768 - GFF402 0.76 -1.0
390,771 + GFF402 0.77 -1.1
391,029 + +0.2
391,120 - -1.3
391,125 + -1.0
391,142 - GFF403 0.10 +0.3
391,279 - GFF403 0.21 -0.4
391,287 + GFF403 0.22 -0.4
391,302 - GFF403 0.23 -0.7
391,332 + GFF403 0.25 -2.2
391,399 + GFF403 0.31 -0.9
391,453 + GFF403 0.35 +0.0
391,456 - GFF403 0.35 -2.1
391,459 - GFF403 0.36 -0.7

Or see this region's nucleotide sequence