Strain Fitness in Sphingobium sp. HT1-2 around GFF40

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF39 and GFF40 are separated by 28 nucleotidesGFF40 and GFF41 are separated by 123 nucleotidesGFF41 and GFF42 are separated by 74 nucleotides GFF39 - Replication-associated recombination protein RarA, at 29,839 to 31,152 GFF39 GFF40 - Glycosyltransferase, at 31,181 to 32,359 GFF40 GFF41 - hypothetical protein, at 32,483 to 32,701 GFF41 GFF42 - hypothetical protein, at 32,776 to 33,429 GFF42 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2at 30.193 kb on - strand, within GFF39at 30.232 kb on + strand, within GFF39at 30.234 kb on + strand, within GFF39at 30.237 kb on - strand, within GFF39at 30.240 kb on - strand, within GFF39at 30.300 kb on - strand, within GFF39at 30.346 kb on - strand, within GFF39at 30.346 kb on - strand, within GFF39at 30.346 kb on - strand, within GFF39at 30.346 kb on - strand, within GFF39at 30.360 kb on + strand, within GFF39at 30.360 kb on + strand, within GFF39at 30.403 kb on + strand, within GFF39at 30.407 kb on - strand, within GFF39at 30.411 kb on - strand, within GFF39at 30.430 kb on - strand, within GFF39at 30.445 kb on + strand, within GFF39at 30.453 kb on + strand, within GFF39at 30.467 kb on + strand, within GFF39at 30.506 kb on + strand, within GFF39at 30.514 kb on - strand, within GFF39at 30.545 kb on + strand, within GFF39at 30.545 kb on + strand, within GFF39at 30.550 kb on + strand, within GFF39at 30.555 kb on + strand, within GFF39at 30.558 kb on - strand, within GFF39at 30.558 kb on - strand, within GFF39at 30.558 kb on - strand, within GFF39at 30.560 kb on + strand, within GFF39at 30.563 kb on - strand, within GFF39at 30.568 kb on - strand, within GFF39at 30.606 kb on - strand, within GFF39at 30.624 kb on - strand, within GFF39at 30.641 kb on + strand, within GFF39at 30.674 kb on + strand, within GFF39at 30.676 kb on + strand, within GFF39at 30.676 kb on + strand, within GFF39at 30.676 kb on + strand, within GFF39at 30.676 kb on + strand, within GFF39at 30.676 kb on + strand, within GFF39at 30.684 kb on - strand, within GFF39at 30.732 kb on + strand, within GFF39at 30.740 kb on + strand, within GFF39at 30.740 kb on - strand, within GFF39at 30.740 kb on - strand, within GFF39at 30.755 kb on - strand, within GFF39at 30.767 kb on + strand, within GFF39at 30.772 kb on - strand, within GFF39at 30.792 kb on - strand, within GFF39at 30.811 kb on + strand, within GFF39at 30.842 kb on - strand, within GFF39at 30.871 kb on - strand, within GFF39at 30.902 kb on + strand, within GFF39at 30.979 kb on - strand, within GFF39at 30.979 kb on - strand, within GFF39at 30.979 kb on - strand, within GFF39at 31.063 kb on + strandat 31.063 kb on + strandat 31.081 kb on - strandat 31.098 kb on + strandat 31.130 kb on - strandat 31.156 kb on + strandat 31.192 kb on - strandat 31.194 kb on - strandat 31.220 kb on - strandat 31.227 kb on + strandat 31.233 kb on - strandat 31.253 kb on - strandat 31.268 kb on - strandat 31.268 kb on - strandat 31.278 kb on - strandat 31.338 kb on + strand, within GFF40at 31.383 kb on + strand, within GFF40at 31.459 kb on + strand, within GFF40at 31.505 kb on - strand, within GFF40at 31.512 kb on + strand, within GFF40at 31.513 kb on - strand, within GFF40at 31.540 kb on - strand, within GFF40at 31.540 kb on - strand, within GFF40at 31.560 kb on - strand, within GFF40at 31.560 kb on - strand, within GFF40at 31.563 kb on + strand, within GFF40at 31.571 kb on - strand, within GFF40at 31.574 kb on + strand, within GFF40at 31.616 kb on + strand, within GFF40at 31.616 kb on + strand, within GFF40at 31.624 kb on - strand, within GFF40at 31.646 kb on + strand, within GFF40at 31.654 kb on - strand, within GFF40at 31.736 kb on + strand, within GFF40at 31.787 kb on + strand, within GFF40at 31.827 kb on - strand, within GFF40at 31.847 kb on + strand, within GFF40at 31.955 kb on + strand, within GFF40at 31.960 kb on + strand, within GFF40at 31.960 kb on + strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.968 kb on - strand, within GFF40at 31.988 kb on - strand, within GFF40at 31.991 kb on + strand, within GFF40at 31.999 kb on - strand, within GFF40at 31.999 kb on - strand, within GFF40at 32.002 kb on + strand, within GFF40at 32.005 kb on - strand, within GFF40at 32.010 kb on - strand, within GFF40at 32.017 kb on + strand, within GFF40at 32.017 kb on + strand, within GFF40at 32.017 kb on + strand, within GFF40at 32.017 kb on + strand, within GFF40at 32.031 kb on + strand, within GFF40at 32.044 kb on - strand, within GFF40at 32.044 kb on - strand, within GFF40at 32.044 kb on - strand, within GFF40at 32.067 kb on - strand, within GFF40at 32.067 kb on - strand, within GFF40at 32.072 kb on - strand, within GFF40at 32.072 kb on - strand, within GFF40at 32.098 kb on + strand, within GFF40at 32.123 kb on + strand, within GFF40at 32.166 kb on + strand, within GFF40at 32.166 kb on + strand, within GFF40at 32.166 kb on + strand, within GFF40at 32.174 kb on - strand, within GFF40at 32.174 kb on - strand, within GFF40at 32.174 kb on - strand, within GFF40at 32.174 kb on - strand, within GFF40at 32.178 kb on + strand, within GFF40at 32.186 kb on - strand, within GFF40at 32.208 kb on - strand, within GFF40at 32.212 kb on + strand, within GFF40at 32.223 kb on - strand, within GFF40at 32.235 kb on - strand, within GFF40at 32.240 kb on + strand, within GFF40at 32.242 kb on + strandat 32.242 kb on + strandat 32.248 kb on - strandat 32.250 kb on - strandat 32.298 kb on - strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.322 kb on + strandat 32.327 kb on + strandat 32.330 kb on - strandat 32.332 kb on + strandat 32.344 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.367 kb on + strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.375 kb on - strandat 32.502 kb on + strandat 32.524 kb on - strand, within GFF41at 32.563 kb on + strand, within GFF41at 32.636 kb on - strand, within GFF41at 32.641 kb on + strand, within GFF41at 32.649 kb on - strand, within GFF41at 32.649 kb on - strand, within GFF41at 32.679 kb on + strand, within GFF41at 32.687 kb on - strandat 32.687 kb on - strandat 32.692 kb on - strandat 32.718 kb on + strandat 32.718 kb on + strandat 32.727 kb on + strandat 32.727 kb on + strandat 32.737 kb on + strandat 32.772 kb on - strandat 32.778 kb on + strandat 32.782 kb on - strandat 32.786 kb on - strandat 32.788 kb on + strandat 32.788 kb on + strandat 32.808 kb on + strandat 32.816 kb on - strandat 32.820 kb on + strandat 32.820 kb on + strandat 32.820 kb on + strandat 32.820 kb on + strandat 32.847 kb on - strand, within GFF42at 32.919 kb on + strand, within GFF42at 32.919 kb on + strand, within GFF42at 32.924 kb on + strand, within GFF42at 32.927 kb on - strand, within GFF42at 32.946 kb on + strand, within GFF42at 32.954 kb on - strand, within GFF42at 32.985 kb on - strand, within GFF42at 33.026 kb on - strand, within GFF42at 33.070 kb on - strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.100 kb on + strand, within GFF42at 33.105 kb on + strand, within GFF42at 33.105 kb on + strand, within GFF42at 33.108 kb on - strand, within GFF42at 33.118 kb on - strand, within GFF42at 33.118 kb on - strand, within GFF42at 33.129 kb on - strand, within GFF42at 33.144 kb on - strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.195 kb on + strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.203 kb on - strand, within GFF42at 33.241 kb on + strand, within GFF42at 33.241 kb on + strand, within GFF42at 33.242 kb on - strand, within GFF42at 33.249 kb on - strand, within GFF42at 33.249 kb on - strand, within GFF42at 33.250 kb on - strand, within GFF42at 33.271 kb on + strand, within GFF42at 33.272 kb on - strand, within GFF42at 33.272 kb on - strand, within GFF42at 33.277 kb on + strand, within GFF42at 33.277 kb on - strand, within GFF42at 33.290 kb on - strand, within GFF42at 33.290 kb on - strand, within GFF42at 33.290 kb on - strand, within GFF42at 33.290 kb on - strand, within GFF42at 33.294 kb on - strand, within GFF42at 33.324 kb on + strand, within GFF42

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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30,193 - GFF39 0.27 -1.0
30,232 + GFF39 0.30 -1.6
30,234 + GFF39 0.30 +0.4
30,237 - GFF39 0.30 -0.2
30,240 - GFF39 0.31 +1.1
30,300 - GFF39 0.35 +0.0
30,346 - GFF39 0.39 +0.5
30,346 - GFF39 0.39 -0.9
30,346 - GFF39 0.39 +0.5
30,346 - GFF39 0.39 -0.1
30,360 + GFF39 0.40 -2.3
30,360 + GFF39 0.40 -0.9
30,403 + GFF39 0.43 +0.1
30,407 - GFF39 0.43 +0.2
30,411 - GFF39 0.44 -0.0
30,430 - GFF39 0.45 -0.7
30,445 + GFF39 0.46 +1.9
30,453 + GFF39 0.47 -0.4
30,467 + GFF39 0.48 +0.2
30,506 + GFF39 0.51 +0.2
30,514 - GFF39 0.51 -0.4
30,545 + GFF39 0.54 +0.8
30,545 + GFF39 0.54 +0.1
30,550 + GFF39 0.54 +1.3
30,555 + GFF39 0.54 -0.7
30,558 - GFF39 0.55 -0.0
30,558 - GFF39 0.55 +1.6
30,558 - GFF39 0.55 -1.4
30,560 + GFF39 0.55 -0.2
30,563 - GFF39 0.55 +0.4
30,568 - GFF39 0.55 -1.6
30,606 - GFF39 0.58 +0.1
30,624 - GFF39 0.60 -0.5
30,641 + GFF39 0.61 +0.3
30,674 + GFF39 0.64 -0.8
30,676 + GFF39 0.64 -0.9
30,676 + GFF39 0.64 +0.0
30,676 + GFF39 0.64 -1.7
30,676 + GFF39 0.64 +2.6
30,676 + GFF39 0.64 +0.9
30,684 - GFF39 0.64 +0.1
30,732 + GFF39 0.68 +2.0
30,740 + GFF39 0.69 +1.1
30,740 - GFF39 0.69 -1.1
30,740 - GFF39 0.69 +0.3
30,755 - GFF39 0.70 -1.3
30,767 + GFF39 0.71 -0.3
30,772 - GFF39 0.71 -0.5
30,792 - GFF39 0.73 +2.1
30,811 + GFF39 0.74 -0.5
30,842 - GFF39 0.76 +0.4
30,871 - GFF39 0.79 +0.9
30,902 + GFF39 0.81 +2.2
30,979 - GFF39 0.87 -0.2
30,979 - GFF39 0.87 -0.2
30,979 - GFF39 0.87 -0.5
31,063 + +0.3
31,063 + -1.0
31,081 - -0.4
31,098 + -2.0
31,130 - -1.4
31,156 + +1.2
31,192 - -0.0
31,194 - -0.5
31,220 - +0.6
31,227 + +0.2
31,233 - +2.3
31,253 - -0.6
31,268 - +1.8
31,268 - -0.3
31,278 - -0.6
31,338 + GFF40 0.13 +0.2
31,383 + GFF40 0.17 +1.4
31,459 + GFF40 0.24 +0.5
31,505 - GFF40 0.27 +1.2
31,512 + GFF40 0.28 +0.5
31,513 - GFF40 0.28 -0.1
31,540 - GFF40 0.30 -0.3
31,540 - GFF40 0.30 +0.7
31,560 - GFF40 0.32 -0.7
31,560 - GFF40 0.32 -0.1
31,563 + GFF40 0.32 -0.6
31,571 - GFF40 0.33 -0.4
31,574 + GFF40 0.33 +0.0
31,616 + GFF40 0.37 +2.3
31,616 + GFF40 0.37 -1.0
31,624 - GFF40 0.38 +0.7
31,646 + GFF40 0.39 -0.3
31,654 - GFF40 0.40 +0.2
31,736 + GFF40 0.47 -2.1
31,787 + GFF40 0.51 +0.8
31,827 - GFF40 0.55 +1.1
31,847 + GFF40 0.56 +2.0
31,955 + GFF40 0.66 +0.0
31,960 + GFF40 0.66 +0.4
31,960 + GFF40 0.66 +0.3
31,968 - GFF40 0.67 -1.1
31,968 - GFF40 0.67 +0.4
31,968 - GFF40 0.67 +0.6
31,968 - GFF40 0.67 +0.4
31,968 - GFF40 0.67 +0.7
31,968 - GFF40 0.67 -1.1
31,988 - GFF40 0.68 +1.9
31,991 + GFF40 0.69 -0.2
31,999 - GFF40 0.69 +0.6
31,999 - GFF40 0.69 -1.3
32,002 + GFF40 0.70 +1.0
32,005 - GFF40 0.70 -1.3
32,010 - GFF40 0.70 +0.8
32,017 + GFF40 0.71 -0.8
32,017 + GFF40 0.71 -1.2
32,017 + GFF40 0.71 -1.5
32,017 + GFF40 0.71 +1.6
32,031 + GFF40 0.72 +0.4
32,044 - GFF40 0.73 -0.6
32,044 - GFF40 0.73 +0.0
32,044 - GFF40 0.73 +0.9
32,067 - GFF40 0.75 -1.3
32,067 - GFF40 0.75 -0.3
32,072 - GFF40 0.76 -0.6
32,072 - GFF40 0.76 +0.8
32,098 + GFF40 0.78 +0.4
32,123 + GFF40 0.80 +2.6
32,166 + GFF40 0.84 +0.9
32,166 + GFF40 0.84 +1.6
32,166 + GFF40 0.84 +0.8
32,174 - GFF40 0.84 +0.8
32,174 - GFF40 0.84 +0.7
32,174 - GFF40 0.84 -0.2
32,174 - GFF40 0.84 +0.3
32,178 + GFF40 0.85 -0.4
32,186 - GFF40 0.85 -0.3
32,208 - GFF40 0.87 -0.2
32,212 + GFF40 0.87 +0.0
32,223 - GFF40 0.88 +0.3
32,235 - GFF40 0.89 -0.8
32,240 + GFF40 0.90 +0.3
32,242 + +1.0
32,242 + -0.4
32,248 - -0.1
32,250 - -1.6
32,298 - +0.7
32,322 + -1.0
32,322 + +1.6
32,322 + +0.9
32,322 + +0.9
32,322 + -0.1
32,322 + -0.3
32,327 + -0.6
32,330 - -0.2
32,332 + -1.5
32,344 + +1.4
32,367 + -0.2
32,367 + -1.1
32,367 + +1.2
32,367 + -0.0
32,367 + -0.5
32,367 + +0.8
32,375 - +0.6
32,375 - +0.6
32,375 - +0.2
32,375 - +1.4
32,375 - +0.1
32,375 - +0.8
32,502 + +0.1
32,524 - GFF41 0.19 +0.7
32,563 + GFF41 0.37 -0.5
32,636 - GFF41 0.70 -0.4
32,641 + GFF41 0.72 -1.0
32,649 - GFF41 0.76 +2.3
32,649 - GFF41 0.76 +0.8
32,679 + GFF41 0.89 -0.1
32,687 - +1.1
32,687 - +0.5
32,692 - +0.3
32,718 + -0.8
32,718 + +0.1
32,727 + -0.3
32,727 + +1.6
32,737 + -0.8
32,772 - +0.8
32,778 + +0.0
32,782 - -0.9
32,786 - +0.5
32,788 + -1.4
32,788 + +0.2
32,808 + -1.1
32,816 - -1.1
32,820 + -0.1
32,820 + +0.7
32,820 + +1.0
32,820 + -0.6
32,847 - GFF42 0.11 -1.2
32,919 + GFF42 0.22 +0.6
32,919 + GFF42 0.22 -1.5
32,924 + GFF42 0.23 -1.3
32,927 - GFF42 0.23 -0.5
32,946 + GFF42 0.26 +0.6
32,954 - GFF42 0.27 +0.3
32,985 - GFF42 0.32 -0.0
33,026 - GFF42 0.38 -0.1
33,070 - GFF42 0.45 -0.5
33,100 + GFF42 0.50 -0.1
33,100 + GFF42 0.50 +0.3
33,100 + GFF42 0.50 -0.7
33,100 + GFF42 0.50 +0.4
33,100 + GFF42 0.50 +0.9
33,100 + GFF42 0.50 +0.7
33,100 + GFF42 0.50 +0.2
33,105 + GFF42 0.50 +1.4
33,105 + GFF42 0.50 -1.4
33,108 - GFF42 0.51 -0.6
33,118 - GFF42 0.52 +1.3
33,118 - GFF42 0.52 +0.7
33,129 - GFF42 0.54 +0.9
33,144 - GFF42 0.56 +1.0
33,195 + GFF42 0.64 -1.4
33,195 + GFF42 0.64 +0.5
33,195 + GFF42 0.64 +1.0
33,195 + GFF42 0.64 +0.4
33,195 + GFF42 0.64 +1.0
33,195 + GFF42 0.64 -0.7
33,195 + GFF42 0.64 +1.8
33,195 + GFF42 0.64 -2.3
33,195 + GFF42 0.64 +0.7
33,195 + GFF42 0.64 +0.8
33,195 + GFF42 0.64 +0.9
33,195 + GFF42 0.64 +1.1
33,195 + GFF42 0.64 -0.2
33,203 - GFF42 0.65 -1.4
33,203 - GFF42 0.65 +0.5
33,203 - GFF42 0.65 -1.6
33,203 - GFF42 0.65 -1.3
33,203 - GFF42 0.65 -1.3
33,203 - GFF42 0.65 +0.8
33,203 - GFF42 0.65 -0.6
33,203 - GFF42 0.65 +0.4
33,203 - GFF42 0.65 +0.6
33,203 - GFF42 0.65 +0.4
33,203 - GFF42 0.65 -1.3
33,203 - GFF42 0.65 +0.4
33,203 - GFF42 0.65 -2.5
33,241 + GFF42 0.71 -0.8
33,241 + GFF42 0.71 +1.0
33,242 - GFF42 0.71 +0.2
33,249 - GFF42 0.72 -0.4
33,249 - GFF42 0.72 +0.8
33,250 - GFF42 0.72 +0.1
33,271 + GFF42 0.76 +0.2
33,272 - GFF42 0.76 -0.3
33,272 - GFF42 0.76 -0.4
33,277 + GFF42 0.77 -0.1
33,277 - GFF42 0.77 +0.0
33,290 - GFF42 0.79 +1.2
33,290 - GFF42 0.79 -1.6
33,290 - GFF42 0.79 -0.2
33,290 - GFF42 0.79 +1.1
33,294 - GFF42 0.79 +0.8
33,324 + GFF42 0.84 +0.4

Or see this region's nucleotide sequence