Strain Fitness in Sphingobium sp. HT1-2 around GFF3979

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,010,119	+		GFF3977	0.17	-1.5
4,010,119	+		GFF3977	0.17	+1.6
4,010,119	+		GFF3977	0.17	+1.1
4,010,121	+		GFF3977	0.18	-2.0
4,010,121	+		GFF3977	0.18	-1.3
4,010,121	+		GFF3977	0.18	-1.0
4,010,121	+		GFF3977	0.18	-0.9
4,010,127	-		GFF3977	0.19	+0.5
4,010,129	-		GFF3977	0.20	+0.5
4,010,129	-		GFF3977	0.20	-3.2
4,010,148	+		GFF3977	0.25	-1.1
4,010,151	-		GFF3977	0.26	-1.1
4,010,172	-		GFF3977	0.31	-1.7
4,010,180	+		GFF3977	0.33	-0.1
4,010,182	-		GFF3977	0.34	-0.6
4,010,182	-		GFF3977	0.34	-0.6
4,010,182	-		GFF3977	0.34	-0.8
4,010,182	-		GFF3977	0.34	-1.3
4,010,206	-		GFF3977	0.40	-1.3
4,010,213	+		GFF3977	0.42	+0.4
4,010,213	+		GFF3977	0.42	+0.3
4,010,239	+		GFF3977	0.49	+1.6
4,010,239	+		GFF3977	0.49	+0.0
4,010,242	-		GFF3977	0.50	+1.5
4,010,244	+		GFF3977	0.50	-0.1
4,010,244	+		GFF3977	0.50	-0.5
4,010,244	+		GFF3977	0.50	+0.3
4,010,244	+		GFF3977	0.50	+0.8
4,010,245	-		GFF3977	0.51	-1.9
4,010,245	-		GFF3977	0.51	-1.3
4,010,247	-		GFF3977	0.51	+1.1
4,010,247	-		GFF3977	0.51	-0.5
4,010,247	-		GFF3977	0.51	-0.3
4,010,247	-		GFF3977	0.51	-0.6
4,010,247	-		GFF3977	0.51	-1.2
4,010,247	-		GFF3977	0.51	-1.6
4,010,247	-		GFF3977	0.51	-2.0
4,010,252	-		GFF3977	0.53	-0.6
4,010,254	+		GFF3977	0.53	+0.2
4,010,262	-		GFF3977	0.55	-0.9
4,010,265	+		GFF3977	0.56	+0.4
4,010,267	-		GFF3977	0.57	-0.6
4,010,267	-		GFF3977	0.57	+1.2
4,010,273	+		GFF3977	0.58	+0.7
4,010,281	-		GFF3977	0.60	-1.5
4,010,310	-		GFF3977	0.68	-1.1
4,010,315	+		GFF3977	0.69	-0.5
4,010,323	-		GFF3977	0.71	-0.1
4,010,364	+		GFF3977	0.82	-0.3
4,010,366	+		GFF3977	0.83	+0.4
4,010,372	-		GFF3977	0.85	+0.5
4,010,379	+		GFF3977	0.86	-1.3
4,010,396	-				-1.1
4,010,396	-				+0.7
4,010,419	-				-1.3
4,010,427	-				+0.2
4,010,481	+				+0.0
4,010,493	-				-0.7
4,010,493	-				-1.7
4,010,531	+		GFF3978	0.14	+0.6
4,010,531	+		GFF3978	0.14	+1.4
4,010,531	+		GFF3978	0.14	-0.3
4,010,531	+		GFF3978	0.14	+0.7
4,010,531	+		GFF3978	0.14	-0.8
4,010,531	+		GFF3978	0.14	+2.2
4,010,539	-		GFF3978	0.17	+1.1
4,010,539	-		GFF3978	0.17	-0.1
4,010,564	+		GFF3978	0.24	+0.9
4,010,564	+		GFF3978	0.24	-0.7
4,010,572	-		GFF3978	0.27	-0.3
4,010,572	-		GFF3978	0.27	+0.8
4,010,588	+		GFF3978	0.32	-0.7
4,010,588	+		GFF3978	0.32	-0.1
4,010,588	+		GFF3978	0.32	+1.1
4,010,588	+		GFF3978	0.32	-1.8
4,010,588	+		GFF3978	0.32	+0.8
4,010,596	-		GFF3978	0.34	+1.1
4,010,596	-		GFF3978	0.34	-0.3
4,010,596	-		GFF3978	0.34	+0.1
4,010,606	-		GFF3978	0.37	-0.8
4,010,611	-		GFF3978	0.39	-0.2
4,010,611	-		GFF3978	0.39	-1.5
4,010,621	-		GFF3978	0.42	-2.2
4,010,621	-		GFF3978	0.42	+0.7
4,010,621	-		GFF3978	0.42	-2.3
4,010,628	+		GFF3978	0.44	-0.5
4,010,628	+		GFF3978	0.44	+0.3
4,010,628	+		GFF3978	0.44	+0.3
4,010,635	+		GFF3978	0.46	-1.4
4,010,635	+		GFF3978	0.46	+0.7
4,010,635	+		GFF3978	0.46	-1.8
4,010,635	+		GFF3978	0.46	-0.8
4,010,635	+		GFF3978	0.46	-0.4
4,010,635	+		GFF3978	0.46	-1.9
4,010,639	+		GFF3978	0.47	+0.2
4,010,643	-		GFF3978	0.49	+0.8
4,010,643	-		GFF3978	0.49	-1.2
4,010,643	-		GFF3978	0.49	-1.9
4,010,643	-		GFF3978	0.49	-0.8
4,010,643	-		GFF3978	0.49	-0.9
4,010,643	-		GFF3978	0.49	-0.8
4,010,643	-		GFF3978	0.49	-1.0
4,010,643	-		GFF3978	0.49	-1.2
4,010,643	-		GFF3978	0.49	-1.8
4,010,643	-		GFF3978	0.49	-1.3
4,010,643	-		GFF3978	0.49	-1.6
4,010,659	+		GFF3978	0.54	-1.8
4,010,670	+		GFF3978	0.57	-0.7
4,010,678	-		GFF3978	0.59	-0.9
4,010,678	-		GFF3978	0.59	-1.5
4,010,678	-		GFF3978	0.59	-1.2
4,010,729	+		GFF3978	0.75	-0.7
4,010,735	+		GFF3978	0.77	-1.6
4,010,743	-		GFF3978	0.79	-0.1
4,010,753	+		GFF3978	0.82	+0.6
4,010,780	+				-1.8
4,010,780	+				+0.1
4,010,788	-				-0.7
4,010,788	-				-1.0
4,010,790	+				+0.1
4,010,790	+				+0.1
4,010,798	-				-1.3
4,010,821	-				-1.6
4,010,822	-				-0.5
4,010,824	+				+0.8
4,010,829	+				+1.5
4,010,834	+				-1.3
4,010,834	+				-0.8
4,010,842	-				+0.4
4,010,863	+				+0.8
4,010,863	+				-1.4
4,010,863	+				-0.9
4,010,863	+				-0.5
4,010,868	+				-2.0
4,010,871	-				-0.6
4,010,871	-				-1.1
4,010,876	-				-0.6
4,010,876	-				+1.0
4,010,878	+				-0.6
4,010,878	+				+0.6
4,010,878	+				-0.3
4,010,878	+				-1.6
4,010,878	+				-0.7
4,010,878	+				+0.8
4,010,878	+				-0.1
4,010,878	+				+1.2
4,010,878	+				+1.2
4,010,878	+				-1.7
4,010,878	+				+0.3
4,010,878	+				+1.0
4,010,878	+				-1.7
4,010,878	+				-1.1
4,010,878	+				-0.1
4,010,878	+				+1.5
4,010,878	+				-0.6
4,010,878	+				+0.4
4,010,878	+				+0.9
4,010,878	+				-1.5
4,010,878	+				-1.1
4,010,886	-				+0.6
4,010,886	-				-0.5
4,010,886	-				-1.2
4,010,886	-				-0.2
4,010,886	-				-0.6
4,010,886	-				-1.0
4,010,886	-				-0.5
4,010,886	-				-0.2
4,010,886	-				-0.4
4,010,886	-				-1.0
4,010,886	-				-0.8
4,010,886	-				-1.3
4,010,886	-				-0.2
4,010,892	-				-0.8
4,010,892	-				+0.9
4,010,903	+				+0.7
4,010,916	+				+0.6
4,010,932	-				-0.3
4,010,980	+				-0.3
4,011,001	+				-1.7
4,011,002	-				+0.7
4,011,008	+				-0.1
4,011,012	+				-1.1
4,011,013	+				+0.1
4,011,014	+				-1.5
4,011,014	+				-1.3
4,011,020	-				-1.4
4,011,022	+				-1.8
4,011,022	-				-1.5
4,011,022	-				-2.5
4,011,022	-				-1.6
4,011,023	+				+1.0
4,011,023	+				-2.4
4,011,024	+				-1.5
4,011,030	-				+1.0
4,011,031	+				-2.3
4,011,031	+				-0.4
4,011,031	+				-0.5
4,011,111	+		GFF3979	0.25	+0.9
4,011,114	-		GFF3979	0.27	-1.6
4,011,130	-		GFF3979	0.36	+0.7
4,011,150	+		GFF3979	0.46	-1.1
4,011,150	+		GFF3979	0.46	+0.0
4,011,170	+		GFF3979	0.57	-1.0
4,011,175	+		GFF3979	0.60	+0.0
4,011,178	-		GFF3979	0.62	-0.4
4,011,180	+		GFF3979	0.63	-1.1
4,011,194	+		GFF3979	0.70	+0.3
4,011,194	+		GFF3979	0.70	+0.1
4,011,202	-		GFF3979	0.75	-1.6
4,011,202	-		GFF3979	0.75	-0.5
4,011,202	-		GFF3979	0.75	-1.0
4,011,202	-		GFF3979	0.75	-0.9
4,011,203	-		GFF3979	0.75	-1.0
4,011,204	+		GFF3979	0.76	-0.4
4,011,204	+		GFF3979	0.76	+0.2
4,011,204	+		GFF3979	0.76	-0.3
4,011,204	+		GFF3979	0.76	-1.5
4,011,212	-		GFF3979	0.80	+1.1
4,011,212	-		GFF3979	0.80	-0.1
4,011,212	-		GFF3979	0.80	-0.9
4,011,212	-		GFF3979	0.80	-0.4
4,011,214	+		GFF3979	0.81	-0.8
4,011,214	+		GFF3979	0.81	-1.2
4,011,214	+		GFF3979	0.81	-0.8
4,011,214	+		GFF3979	0.81	-1.1
4,011,214	+		GFF3979	0.81	+0.1
4,011,231	+				-1.5
4,011,231	+				+0.1
4,011,231	+				+0.2
4,011,231	+				-1.9
4,011,231	+				+0.7
4,011,231	+				-0.4
4,011,239	-				-1.9
4,011,239	-				-1.7
4,011,239	-				-0.4
4,011,239	-				+0.0
4,011,239	-				-0.7
4,011,247	+				-1.1
4,011,248	+				+0.3
4,011,248	+				-0.8
4,011,248	+				-0.6
4,011,256	-				+0.9
4,011,263	+				-0.1
4,011,265	+				-0.1
4,011,271	-				+0.4
4,011,285	+		GFF3980	0.12	-1.0
4,011,285	+		GFF3980	0.12	-0.4
4,011,293	-		GFF3980	0.14	-1.2
4,011,298	-		GFF3980	0.16	-0.9
4,011,301	+		GFF3980	0.17	-0.8
4,011,341	-		GFF3980	0.29	-0.4
4,011,344	+		GFF3980	0.30	-0.3
4,011,359	+		GFF3980	0.35	-1.1
4,011,367	-		GFF3980	0.37	+0.8
4,011,369	+		GFF3980	0.38	-2.1
4,011,373	+		GFF3980	0.39	+1.2
4,011,373	+		GFF3980	0.39	+0.4
4,011,373	+		GFF3980	0.39	+0.4
4,011,381	-		GFF3980	0.42	-0.9
4,011,381	-		GFF3980	0.42	-0.6
4,011,407	-		GFF3980	0.50	-1.0
4,011,438	-		GFF3980	0.60	-0.3
4,011,447	+		GFF3980	0.62	-0.1
4,011,447	+		GFF3980	0.62	-2.5
4,011,448	+		GFF3980	0.63	-0.5
4,011,448	+		GFF3980	0.63	+0.8
4,011,449	-		GFF3980	0.63	-0.6
4,011,452	+		GFF3980	0.64	+0.5
4,011,452	+		GFF3980	0.64	-0.8
4,011,452	+		GFF3980	0.64	+0.8
4,011,460	-		GFF3980	0.66	+0.3
4,011,460	-		GFF3980	0.66	-1.1
4,011,460	-		GFF3980	0.66	-2.2
4,011,460	-		GFF3980	0.66	-1.6
4,011,460	-		GFF3980	0.66	-2.3
4,011,477	-		GFF3980	0.72	+0.1
4,011,477	-		GFF3980	0.72	-1.3
4,011,482	-		GFF3980	0.73	-0.1
4,011,485	+		GFF3980	0.74	-0.4
4,011,492	+		GFF3980	0.76	-0.8
4,011,513	-		GFF3980	0.83	+2.3
4,011,522	+		GFF3980	0.86	-0.3
4,011,522	+		GFF3980	0.86	-0.2
4,011,522	+		GFF3980	0.86	-0.6
4,011,522	+		GFF3980	0.86	-1.6
4,011,522	+		GFF3980	0.86	-0.6
4,011,522	+		GFF3980	0.86	+0.0
4,011,522	+		GFF3980	0.86	-0.6
4,011,530	-		GFF3980	0.88	-0.7
4,011,533	+		GFF3980	0.89	-0.4
4,011,541	+				-1.4
4,011,543	+				-1.3
4,011,548	-				-1.4
4,011,559	+				+0.7
4,011,567	-				-0.2
4,011,568	+				+1.1
4,011,580	+				-0.7
4,011,588	-				-1.5
4,011,588	-				+1.1
4,011,598	+				-0.3
4,011,617	-				-0.6
4,011,639	+		GFF3981	0.13	+0.3
4,011,645	-		GFF3981	0.14	+0.3
4,011,661	+		GFF3981	0.17	-1.4
4,011,669	-		GFF3981	0.19	-2.5
4,011,679	+		GFF3981	0.20	-0.1
4,011,679	+		GFF3981	0.20	+0.1
4,011,679	+		GFF3981	0.20	-1.0
4,011,679	+		GFF3981	0.20	-1.1
4,011,679	+		GFF3981	0.20	-1.2
4,011,679	+		GFF3981	0.20	+0.2
4,011,679	+		GFF3981	0.20	+0.3
4,011,679	+		GFF3981	0.20	-1.0
4,011,679	+		GFF3981	0.20	+1.4
4,011,679	+		GFF3981	0.20	+0.3
4,011,679	+		GFF3981	0.20	+0.5
4,011,679	+		GFF3981	0.20	+0.0
4,011,684	+		GFF3981	0.21	-0.8
4,011,684	+		GFF3981	0.21	-1.3
4,011,684	+		GFF3981	0.21	-1.1
4,011,687	-		GFF3981	0.22	+0.4
4,011,687	-		GFF3981	0.22	-1.5
4,011,687	-		GFF3981	0.22	-0.7
4,011,687	-		GFF3981	0.22	-0.9
4,011,687	-		GFF3981	0.22	+1.2
4,011,687	-		GFF3981	0.22	-0.0
4,011,687	-		GFF3981	0.22	+0.7
4,011,687	-		GFF3981	0.22	-1.7
4,011,687	-		GFF3981	0.22	-0.9
4,011,687	-		GFF3981	0.22	-1.6
4,011,687	-		GFF3981	0.22	-0.3
4,011,687	-		GFF3981	0.22	+0.6
4,011,687	-		GFF3981	0.22	+1.6
4,011,687	-		GFF3981	0.22	-0.3
4,011,687	-		GFF3981	0.22	-0.1
4,011,687	-		GFF3981	0.22	-1.1
4,011,687	-		GFF3981	0.22	-1.3
4,011,687	-		GFF3981	0.22	-2.1
4,011,692	+		GFF3981	0.23	+0.5
4,011,692	+		GFF3981	0.23	+0.2
4,011,692	+		GFF3981	0.23	-0.6
4,011,692	-		GFF3981	0.23	-0.1
4,011,700	-		GFF3981	0.24	+1.2
4,011,700	-		GFF3981	0.24	+0.4
4,011,701	-		GFF3981	0.24	+2.3
4,011,701	-		GFF3981	0.24	-0.7
4,011,701	-		GFF3981	0.24	-0.8
4,011,723	-		GFF3981	0.28	-1.2
4,011,725	+		GFF3981	0.29	-1.8
4,011,733	-		GFF3981	0.30	-1.3
4,011,733	-		GFF3981	0.30	+0.7
4,011,750	+		GFF3981	0.33	-1.0
4,011,758	-		GFF3981	0.35	-0.3
4,011,782	+		GFF3981	0.39	+0.7
4,011,782	+		GFF3981	0.39	-1.1
4,011,815	+		GFF3981	0.45	-0.1
4,011,822	-		GFF3981	0.46	-0.5
4,011,823	-		GFF3981	0.46	-1.5
4,011,844	+		GFF3981	0.50	+1.2
4,011,844	+		GFF3981	0.50	-0.5
4,011,844	+		GFF3981	0.50	-1.3
4,011,844	+		GFF3981	0.50	+1.0
4,011,844	+		GFF3981	0.50	-0.0
4,011,844	+		GFF3981	0.50	+0.8
4,011,844	+		GFF3981	0.50	-0.6
4,011,844	+		GFF3981	0.50	-1.1
4,011,844	+		GFF3981	0.50	-1.3
4,011,844	+		GFF3981	0.50	+0.4
4,011,844	+		GFF3981	0.50	+1.5
4,011,844	+		GFF3981	0.50	-0.4
4,011,849	+		GFF3981	0.51	+0.7
4,011,849	+		GFF3981	0.51	-0.6
4,011,852	-		GFF3981	0.51	-1.1
4,011,852	-		GFF3981	0.51	-1.1
4,011,852	-		GFF3981	0.51	-1.0
4,011,852	-		GFF3981	0.51	-0.3
4,011,852	-		GFF3981	0.51	-0.2
4,011,852	-		GFF3981	0.51	-2.3
4,011,852	-		GFF3981	0.51	-2.2
4,011,852	-		GFF3981	0.51	-1.5
4,011,852	-		GFF3981	0.51	-0.9
4,011,854	+		GFF3981	0.52	+0.6
4,011,854	+		GFF3981	0.52	+0.8
4,011,857	-		GFF3981	0.52	-0.3
4,011,858	-		GFF3981	0.52	-1.3
4,011,859	+		GFF3981	0.53	-1.0
4,011,861	+		GFF3981	0.53	+0.1
4,011,867	-		GFF3981	0.54	-1.5
4,011,869	-		GFF3981	0.54	-0.4
4,011,887	-		GFF3981	0.58	-1.4
4,011,896	+		GFF3981	0.59	-0.6
4,011,907	+		GFF3981	0.61	-2.0
4,011,915	-		GFF3981	0.63	-0.3
4,011,938	+		GFF3981	0.67	+0.6
4,011,946	-		GFF3981	0.68	+0.0
4,011,995	-		GFF3981	0.77	+0.8
4,012,016	-		GFF3981	0.81	+0.1
4,012,020	-		GFF3981	0.81	+0.7
4,012,020	-		GFF3981	0.81	-1.9
4,012,030	-		GFF3981	0.83	-1.5
4,012,036	-		GFF3981	0.84	-0.2
4,012,038	-		GFF3981	0.84	-2.0
4,012,045	+		GFF3981	0.86	+0.7
4,012,046	-		GFF3981	0.86	-1.6
4,012,048	-		GFF3981	0.86	-1.2
4,012,051	+		GFF3981	0.87	-1.3
4,012,051	+		GFF3981	0.87	-0.3
4,012,053	-		GFF3981	0.87	-1.9
4,012,053	-		GFF3981	0.87	+0.1
4,012,053	-		GFF3981	0.87	+0.9
4,012,059	-		GFF3981	0.88	-0.3
4,012,059	-		GFF3981	0.88	-0.5
4,012,064	-		GFF3981	0.89	-1.7
4,012,076	-				-0.7
4,012,109	+				-0.6
4,012,112	+				-0.1
4,012,125	+				+0.7
4,012,127	-				-0.5
4,012,156	+				-0.5
4,012,164	-				+0.4
4,012,164	-				-0.6
4,012,182	+				-1.7
4,012,182	+				+0.4
4,012,182	+				-1.5
4,012,182	+				-0.1
4,012,182	+				+0.7
4,012,182	+				-0.5
4,012,182	+				-1.0
4,012,182	+				-0.2
4,012,182	+				-0.6
4,012,182	+				-0.3
4,012,182	+				-2.1
4,012,182	+				+0.2
4,012,182	+				+0.4
4,012,182	+				-0.1
4,012,182	+				-0.9
4,012,182	+				-0.8
4,012,182	+				+0.3
4,012,182	+				-0.3
4,012,182	+				-0.2
4,012,182	+				-0.3
4,012,182	+				-1.0
4,012,182	+				-1.0
4,012,182	+				-0.5
4,012,182	+				-0.4
4,012,182	+				-0.9
4,012,182	+				-0.2
4,012,182	+				+1.3
4,012,182	-				-0.8
4,012,190	-				-2.6
4,012,190	-				-0.0
4,012,190	-				+0.1
4,012,190	-				-0.1
4,012,190	-				-0.1
4,012,190	-				-0.8
4,012,190	-				-0.7
4,012,190	-				-0.9
4,012,190	-				-0.3
4,012,190	-				+1.2
4,012,190	-				-1.0
4,012,190	-				-0.1
4,012,190	-				+0.6
4,012,190	-				+0.4
4,012,190	-				-0.3
4,012,190	-				-0.7
4,012,190	-				-1.1
4,012,190	-				+1.0
4,012,190	-				-0.4
4,012,190	-				-1.7
4,012,190	-				-2.7
4,012,190	-				-0.1
4,012,190	-				+0.5
4,012,195	-				+2.0
4,012,200	-				+0.2
4,012,228	+		GFF3982	0.10	-0.3
4,012,237	-		GFF3982	0.12	-1.3