Strain Fitness in Sphingobium sp. HT1-2 around GFF3914

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,950,138	+		GFF3911	0.17	+1.0
3,950,138	+		GFF3911	0.17	-1.6
3,950,141	-		GFF3911	0.17	-0.8
3,950,141	-		GFF3911	0.17	-0.0
3,950,141	-		GFF3911	0.17	-1.3
3,950,146	-		GFF3911	0.18	-0.3
3,950,146	-		GFF3911	0.18	-1.7
3,950,146	-		GFF3911	0.18	-1.5
3,950,146	-		GFF3911	0.18	-0.9
3,950,185	+		GFF3911	0.25	+0.4
3,950,185	+		GFF3911	0.25	-0.4
3,950,193	-		GFF3911	0.26	-1.2
3,950,206	+		GFF3911	0.28	-0.1
3,950,206	+		GFF3911	0.28	+0.6
3,950,236	-		GFF3911	0.34	-0.2
3,950,275	+		GFF3911	0.40	+0.4
3,950,275	+		GFF3911	0.40	+0.5
3,950,316	-		GFF3911	0.47	+0.7
3,950,352	+		GFF3911	0.53	+0.4
3,950,369	-		GFF3911	0.56	-0.3
3,950,375	+		GFF3911	0.57	-1.2
3,950,385	+		GFF3911	0.59	-0.1
3,950,385	+		GFF3911	0.59	-0.2
3,950,385	+		GFF3911	0.59	+1.1
3,950,393	-		GFF3911	0.60	-1.6
3,950,413	+		GFF3911	0.63	-0.8
3,950,442	+		GFF3911	0.68	-1.9
3,950,450	-		GFF3911	0.70	+0.2
3,950,450	-		GFF3911	0.70	-1.5
3,950,465	+		GFF3911	0.72	-0.4
3,950,478	-		GFF3911	0.74	-0.4
3,950,485	+		GFF3911	0.76	+0.3
3,950,508	+		GFF3911	0.80	-0.8
3,950,525	+		GFF3911	0.82	+0.5
3,950,525	+		GFF3911	0.82	-1.9
3,950,525	+		GFF3911	0.82	-0.2
3,950,525	+		GFF3911	0.82	+0.6
3,950,535	+		GFF3911	0.84	+0.2
3,950,535	+		GFF3911	0.84	+0.2
3,950,535	+		GFF3911	0.84	+1.6
3,950,582	+				-0.2
3,950,602	+				+0.4
3,950,625	+				-1.2
3,950,635	+				-1.5
3,950,643	-				-1.5
3,950,643	-				-2.3
3,950,643	-				+0.0
3,950,658	-				-1.0
3,950,688	+				-1.1
3,950,693	+				-0.1
3,950,726	+				-0.3
3,950,726	+				-0.0
3,950,730	+				+1.3
3,950,734	-		GFF3912	0.11	-0.1
3,950,734	-		GFF3912	0.11	-0.2
3,950,734	-		GFF3912	0.11	+1.6
3,950,734	-		GFF3912	0.11	-1.2
3,950,761	-		GFF3912	0.22	-0.8
3,950,765	-		GFF3912	0.24	-0.2
3,950,768	-		GFF3912	0.25	-1.8
3,950,775	+		GFF3912	0.28	-0.9
3,950,775	-		GFF3912	0.28	-1.2
3,950,783	-		GFF3912	0.31	+0.4
3,950,785	+		GFF3912	0.32	+0.8
3,950,785	-		GFF3912	0.32	+1.4
3,950,791	-		GFF3912	0.34	-0.6
3,950,804	+		GFF3912	0.39	+0.6
3,950,812	-		GFF3912	0.43	-1.4
3,950,812	-		GFF3912	0.43	-1.4
3,950,812	-		GFF3912	0.43	-0.2
3,950,814	+		GFF3912	0.43	-0.3
3,950,814	+		GFF3912	0.43	-1.1
3,950,814	+		GFF3912	0.43	-0.0
3,950,814	+		GFF3912	0.43	-0.0
3,950,814	+		GFF3912	0.43	+0.6
3,950,814	+		GFF3912	0.43	+0.6
3,950,814	+		GFF3912	0.43	-0.8
3,950,814	+		GFF3912	0.43	-0.8
3,950,814	+		GFF3912	0.43	-0.5
3,950,822	-		GFF3912	0.47	+0.1
3,950,822	-		GFF3912	0.47	+1.3
3,950,822	-		GFF3912	0.47	-1.0
3,950,822	-		GFF3912	0.47	-1.3
3,950,822	-		GFF3912	0.47	-0.5
3,950,822	-		GFF3912	0.47	+1.6
3,950,822	-		GFF3912	0.47	-1.0
3,950,822	-		GFF3912	0.47	+0.4
3,950,822	-		GFF3912	0.47	-0.6
3,950,841	-		GFF3912	0.54	+0.2
3,950,866	-		GFF3912	0.65	-0.0
3,950,875	+		GFF3912	0.68	-2.1
3,950,875	+		GFF3912	0.68	+1.7
3,950,883	-		GFF3912	0.72	+0.4
3,950,883	-		GFF3912	0.72	+1.6
3,950,883	-		GFF3912	0.72	-0.9
3,950,883	-		GFF3912	0.72	+1.6
3,950,883	-		GFF3912	0.72	-0.2
3,950,883	-		GFF3912	0.72	-2.0
3,950,883	-		GFF3912	0.72	-0.9
3,950,884	+		GFF3912	0.72	-0.2
3,950,888	+		GFF3912	0.74	-0.7
3,950,898	+		GFF3912	0.78	-1.8
3,950,906	-		GFF3912	0.81	-0.9
3,950,906	-		GFF3912	0.81	-0.9
3,950,911	-		GFF3912	0.83	-1.4
3,950,970	+				-1.0
3,950,970	+				-0.0
3,950,970	+				-0.2
3,950,970	+				+0.6
3,950,970	+				+0.5
3,950,970	+				-0.7
3,950,970	+				+0.9
3,950,970	+				-0.4
3,950,970	+				-1.9
3,950,970	+				+0.7
3,950,970	+				+0.6
3,950,970	+				-0.1
3,950,970	+				-1.4
3,950,978	-		GFF3913	0.14	+1.4
3,950,978	-		GFF3913	0.14	-1.4
3,950,978	-		GFF3913	0.14	-0.2
3,950,978	-		GFF3913	0.14	-0.7
3,950,988	-		GFF3913	0.19	-0.1
3,951,012	+		GFF3913	0.33	-1.6
3,951,022	+		GFF3913	0.38	+0.3
3,951,031	-		GFF3913	0.44	-1.0
3,951,099	+		GFF3913	0.82	-0.7
3,951,107	-		GFF3913	0.86	-1.3
3,951,124	-				-0.2
3,951,151	+				-0.9
3,951,151	+				-0.4
3,951,151	+				-1.8
3,951,151	+				-1.0
3,951,151	+				+1.5
3,951,151	+				-0.7
3,951,151	+				-1.4
3,951,151	+				+0.0
3,951,159	-				+0.9
3,951,159	-				-0.2
3,951,159	-				-1.3
3,951,159	-				+0.2
3,951,159	-				+0.1
3,951,159	-				-0.6
3,951,159	-				-2.1
3,951,159	-				-0.7
3,951,159	-				+0.5
3,951,177	+				-0.2
3,951,182	+				-0.7
3,951,182	+				-1.8
3,951,187	+				-1.1
3,951,190	-				-1.7
3,951,236	+				-0.2
3,951,244	-				+0.2
3,951,254	-				-1.2
3,951,272	-		GFF3914	0.11	-0.6
3,951,291	+		GFF3914	0.12	+0.7
3,951,303	+		GFF3914	0.13	-1.1
3,951,303	+		GFF3914	0.13	-1.6
3,951,303	+		GFF3914	0.13	-0.0
3,951,303	+		GFF3914	0.13	-0.0
3,951,311	-		GFF3914	0.14	-1.5
3,951,311	-		GFF3914	0.14	-0.4
3,951,326	-		GFF3914	0.15	+0.6
3,951,340	+		GFF3914	0.16	-0.5
3,951,353	+		GFF3914	0.17	-1.6
3,951,402	+		GFF3914	0.20	+1.4
3,951,461	+		GFF3914	0.25	-0.8
3,951,473	-		GFF3914	0.26	-0.3
3,951,475	+		GFF3914	0.26	-0.6
3,951,494	+		GFF3914	0.27	-0.8
3,951,494	+		GFF3914	0.27	-1.4
3,951,499	+		GFF3914	0.28	-1.3
3,951,502	-		GFF3914	0.28	+0.1
3,951,502	-		GFF3914	0.28	-1.1
3,951,502	-		GFF3914	0.28	-1.7
3,951,502	-		GFF3914	0.28	-1.1
3,951,526	+		GFF3914	0.30	-0.6
3,951,532	+		GFF3914	0.30	-0.2
3,951,537	+		GFF3914	0.31	-1.6
3,951,539	-		GFF3914	0.31	-1.8
3,951,539	-		GFF3914	0.31	-0.2
3,951,540	-		GFF3914	0.31	-0.8
3,951,542	+		GFF3914	0.31	-1.2
3,951,542	+		GFF3914	0.31	-1.7
3,951,542	+		GFF3914	0.31	-0.8
3,951,545	-		GFF3914	0.31	-0.4
3,951,550	-		GFF3914	0.32	-0.5
3,951,556	+		GFF3914	0.32	-0.7
3,951,556	+		GFF3914	0.32	+0.4
3,951,556	+		GFF3914	0.32	+0.2
3,951,561	+		GFF3914	0.32	+1.1
3,951,561	+		GFF3914	0.32	-0.4
3,951,561	+		GFF3914	0.32	-1.4
3,951,564	-		GFF3914	0.33	-0.8
3,951,568	-		GFF3914	0.33	-2.0
3,951,569	-		GFF3914	0.33	-1.5
3,951,623	-		GFF3914	0.37	-1.9
3,951,623	-		GFF3914	0.37	+0.9
3,951,673	-		GFF3914	0.41	-0.2
3,951,717	-		GFF3914	0.44	-0.5
3,951,769	-		GFF3914	0.48	-0.6
3,951,773	-		GFF3914	0.48	-0.4
3,951,788	-		GFF3914	0.50	-0.8
3,951,803	+		GFF3914	0.51	-1.1
3,951,817	-		GFF3914	0.52	-1.4
3,951,846	-		GFF3914	0.54	-0.1
3,951,853	+		GFF3914	0.54	-0.6
3,951,853	+		GFF3914	0.54	-1.9
3,951,853	-		GFF3914	0.54	+0.5
3,951,861	-		GFF3914	0.55	+1.3
3,951,861	-		GFF3914	0.55	-1.3
3,951,861	-		GFF3914	0.55	+0.4
3,951,863	+		GFF3914	0.55	-0.9
3,951,871	-		GFF3914	0.56	+0.1
3,951,871	-		GFF3914	0.56	+0.4
3,951,871	-		GFF3914	0.56	+0.6
3,951,874	-		GFF3914	0.56	+0.1
3,951,926	-		GFF3914	0.60	-0.6
3,951,957	-		GFF3914	0.62	-0.1
3,951,987	-		GFF3914	0.65	-0.7
3,951,989	-		GFF3914	0.65	-0.6
3,951,999	-		GFF3914	0.66	-0.4
3,952,002	+		GFF3914	0.66	+0.1
3,952,010	-		GFF3914	0.66	+0.1
3,952,020	+		GFF3914	0.67	-0.6
3,952,028	+		GFF3914	0.68	-0.6
3,952,031	-		GFF3914	0.68	-1.3
3,952,036	-		GFF3914	0.68	+0.1
3,952,036	-		GFF3914	0.68	+0.8
3,952,037	-		GFF3914	0.68	-1.0
3,952,059	+		GFF3914	0.70	-0.8
3,952,077	+		GFF3914	0.71	-0.5
3,952,080	-		GFF3914	0.72	+0.0
3,952,080	-		GFF3914	0.72	-1.0
3,952,082	+		GFF3914	0.72	+1.8
3,952,085	-		GFF3914	0.72	+1.6
3,952,085	-		GFF3914	0.72	-1.3
3,952,087	+		GFF3914	0.72	-0.7
3,952,087	+		GFF3914	0.72	-1.4
3,952,087	+		GFF3914	0.72	+0.7
3,952,087	+		GFF3914	0.72	-1.5
3,952,087	+		GFF3914	0.72	-1.3
3,952,087	+		GFF3914	0.72	-0.6
3,952,087	+		GFF3914	0.72	-1.2
3,952,087	+		GFF3914	0.72	-0.8
3,952,087	+		GFF3914	0.72	-1.6
3,952,087	+		GFF3914	0.72	-1.4
3,952,087	+		GFF3914	0.72	-1.1
3,952,087	+		GFF3914	0.72	-1.3
3,952,087	+		GFF3914	0.72	-0.9
3,952,087	+		GFF3914	0.72	-1.1
3,952,087	+		GFF3914	0.72	+0.1
3,952,087	+		GFF3914	0.72	+0.4
3,952,087	+		GFF3914	0.72	-1.7
3,952,092	+		GFF3914	0.73	-0.9
3,952,095	-		GFF3914	0.73	-0.2
3,952,095	-		GFF3914	0.73	-0.7
3,952,095	-		GFF3914	0.73	+0.6
3,952,095	-		GFF3914	0.73	+0.0
3,952,095	-		GFF3914	0.73	-1.2
3,952,099	+		GFF3914	0.73	-0.6
3,952,099	+		GFF3914	0.73	+0.1
3,952,099	+		GFF3914	0.73	-1.3
3,952,100	-		GFF3914	0.73	+0.1
3,952,100	-		GFF3914	0.73	-0.9
3,952,107	-		GFF3914	0.74	+0.2
3,952,107	-		GFF3914	0.74	+1.1
3,952,107	-		GFF3914	0.74	-1.4
3,952,109	+		GFF3914	0.74	-2.1
3,952,112	+		GFF3914	0.74	-0.6
3,952,112	+		GFF3914	0.74	+0.3
3,952,118	+		GFF3914	0.75	+0.9
3,952,160	+		GFF3914	0.78	-1.3
3,952,168	-		GFF3914	0.78	+0.3
3,952,188	+		GFF3914	0.80	+1.0
3,952,190	+		GFF3914	0.80	-0.9
3,952,196	-		GFF3914	0.80	+0.8
3,952,196	-		GFF3914	0.80	+0.7
3,952,196	-		GFF3914	0.80	-1.0
3,952,207	+		GFF3914	0.81	-0.5
3,952,207	+		GFF3914	0.81	-0.5
3,952,207	+		GFF3914	0.81	-0.8
3,952,215	-		GFF3914	0.82	+0.6
3,952,220	+		GFF3914	0.82	-1.1
3,952,228	-		GFF3914	0.83	-0.6
3,952,269	+		GFF3914	0.86	-0.2
3,952,272	-		GFF3914	0.86	-0.8
3,952,277	-		GFF3914	0.87	+0.1
3,952,277	-		GFF3914	0.87	-0.6
3,952,306	+		GFF3914	0.89	+0.9
3,952,319	-		GFF3914	0.90	+0.9
3,952,333	-				-0.4
3,952,343	-				+1.5
3,952,348	+				-0.8
3,952,358	+				+0.5
3,952,358	+				-1.2
3,952,361	-				-0.9
3,952,377	+				+0.1
3,952,401	+				-0.1
3,952,401	+				-0.7
3,952,401	+				-0.9
3,952,439	+				-0.5
3,952,447	-				-0.2
3,952,455	+				-0.1
3,952,457	-				-1.7
3,952,473	+				-0.4
3,952,497	-				+0.3
3,952,507	+				+0.2
3,952,515	-				-0.2
3,952,541	+				+0.0
3,952,542	+				-1.0
3,952,546	+				-0.5
3,952,549	-				-0.6
3,952,551	+				-0.9
3,952,551	+				-2.1
3,952,559	-				-0.5
3,952,563	-				+0.7
3,952,579	+				-1.2
3,952,614	+				-2.0
3,952,622	-				+1.1
3,952,624	-				-0.5
3,952,632	+				-1.3
3,952,632	+				-0.2
3,952,632	+				+0.3
3,952,632	+				-1.6
3,952,632	+				+1.3
3,952,632	+				+0.4
3,952,637	+				-0.4
3,952,640	-				-1.1
3,952,640	-				+1.3
3,952,640	-				+0.2
3,952,640	-				-1.2
3,952,640	-				+0.2
3,952,640	-				-1.2
3,952,640	-				+2.0
3,952,640	-				-0.6
3,952,645	-				+1.1
3,952,645	-				-0.6
3,952,645	-				+0.4
3,952,650	-				-1.6
3,952,674	-				-0.2
3,952,677	+				-0.6
3,952,682	+				+0.4
3,952,682	+				+0.3
3,952,682	+				-0.5
3,952,682	+				-0.3
3,952,682	+				+0.8
3,952,682	+				+1.0
3,952,682	+				-2.0
3,952,682	+				+0.1
3,952,682	+				+0.3
3,952,682	+				-0.4
3,952,682	+				-0.8
3,952,682	+				-0.3
3,952,682	+				-1.0
3,952,682	+				+0.1
3,952,682	+				+0.4
3,952,682	+				+1.6
3,952,682	+				+0.3
3,952,682	+				-1.5
3,952,690	-				-1.2
3,952,690	-				-0.5
3,952,690	-				+0.7
3,952,690	-				+0.6
3,952,690	-				-1.5
3,952,690	-				-0.2
3,952,690	-				-0.6
3,952,690	-				-1.8
3,952,690	-				-0.5
3,952,690	-				-0.7
3,952,707	+				-0.5
3,952,713	+				+0.9
3,952,714	-				+0.1
3,952,721	+				-2.1
3,952,721	-				-0.5
3,952,725	+				+0.1
3,952,742	+				+0.6
3,952,746	+				-0.4
3,952,759	-				-0.8
3,952,776	+				-0.2
3,952,776	+				+0.4
3,952,781	+				-0.6
3,952,784	-				+0.4
3,952,789	-				-0.6
3,952,808	+				-0.9
3,952,827	+		GFF3915	0.11	-0.6
3,952,829	+		GFF3915	0.11	-2.0
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