Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF389 and GFF390 are separated by 10 nucleotides GFF390 and GFF391 are separated by 4 nucleotides GFF391 and GFF392 overlap by 4 nucleotides GFF392 and GFF393 are separated by 11 nucleotides
GFF389 - Phosphopantothenoylcysteine decarboxylase (EC 4.1.1.36) / Phosphopantothenoylcysteine synthetase (EC 6.3.2.5), at 380,664 to 381,908
GFF389
GFF390 - 'Deoxyuridine 5'-triphosphate nucleotidohydrolase (EC 3.6.1.23)' transl_table=11, at 381,919 to 382,338
GFF390
GFF391 - hypothetical protein, at 382,343 to 382,747
GFF391
GFF392 - Molybdopterin-synthase adenylyltransferase (EC 2.7.7.80), at 382,744 to 383,511
GFF392
GFF393 - hypothetical protein, at 383,523 to 383,864
GFF393
Position (kb) 382
383 Strain fitness (log2 ratio) -2
-1
0
1
2 at 382.341 kb on - strand at 382.341 kb on - strand at 382.350 kb on - strand at 382.407 kb on + strand, within GFF391 at 382.415 kb on - strand, within GFF391 at 382.415 kb on - strand, within GFF391 at 382.415 kb on - strand, within GFF391 at 382.417 kb on + strand, within GFF391 at 382.417 kb on + strand, within GFF391 at 382.419 kb on + strand, within GFF391 at 382.424 kb on + strand, within GFF391 at 382.424 kb on + strand, within GFF391 at 382.428 kb on + strand, within GFF391 at 382.432 kb on + strand, within GFF391 at 382.433 kb on + strand, within GFF391 at 382.448 kb on - strand, within GFF391 at 382.449 kb on + strand, within GFF391 at 382.457 kb on - strand, within GFF391 at 382.457 kb on - strand, within GFF391 at 382.457 kb on - strand, within GFF391 at 382.481 kb on + strand, within GFF391 at 382.481 kb on + strand, within GFF391 at 382.489 kb on - strand, within GFF391 at 382.510 kb on - strand, within GFF391 at 382.510 kb on - strand, within GFF391 at 382.510 kb on - strand, within GFF391 at 382.515 kb on + strand, within GFF391 at 382.547 kb on + strand, within GFF391 at 382.556 kb on + strand, within GFF391 at 382.569 kb on - strand, within GFF391 at 382.569 kb on - strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.574 kb on + strand, within GFF391 at 382.582 kb on - strand, within GFF391 at 382.582 kb on - strand, within GFF391 at 382.582 kb on - strand, within GFF391 at 382.587 kb on - strand, within GFF391 at 382.625 kb on + strand, within GFF391 at 382.625 kb on + strand, within GFF391 at 382.625 kb on - strand, within GFF391 at 382.633 kb on - strand, within GFF391 at 382.633 kb on - strand, within GFF391 at 382.633 kb on - strand, within GFF391 at 382.633 kb on - strand, within GFF391 at 382.661 kb on + strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.669 kb on - strand, within GFF391 at 382.675 kb on + strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.683 kb on - strand, within GFF391 at 382.686 kb on + strand, within GFF391 at 382.689 kb on - strand, within GFF391 at 382.690 kb on + strand, within GFF391 at 382.697 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.700 kb on + strand, within GFF391 at 382.708 kb on - strand at 382.723 kb on - strand at 382.731 kb on + strand at 382.739 kb on - strand at 382.740 kb on + strand at 382.750 kb on - strand at 382.762 kb on + strand at 382.765 kb on + strand at 382.775 kb on - strand at 382.787 kb on - strand at 382.792 kb on - strand at 382.817 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.818 kb on + strand at 382.826 kb on - strand, within GFF392 at 382.826 kb on - strand, within GFF392 at 382.826 kb on - strand, within GFF392 at 382.832 kb on + strand, within GFF392 at 382.835 kb on - strand, within GFF392 at 382.861 kb on - strand, within GFF392 at 382.869 kb on - strand, within GFF392 at 382.875 kb on + strand, within GFF392 at 382.878 kb on - strand, within GFF392 at 382.881 kb on + strand, within GFF392 at 382.884 kb on - strand, within GFF392 at 382.910 kb on + strand, within GFF392 at 382.920 kb on + strand, within GFF392 at 382.934 kb on + strand, within GFF392 at 382.934 kb on + strand, within GFF392 at 382.939 kb on + strand, within GFF392 at 382.947 kb on - strand, within GFF392 at 382.947 kb on - strand, within GFF392 at 382.952 kb on - strand, within GFF392 at 382.952 kb on - strand, within GFF392 at 382.958 kb on + strand, within GFF392 at 382.968 kb on + strand, within GFF392 at 382.971 kb on - strand, within GFF392 at 382.986 kb on - strand, within GFF392 at 382.997 kb on + strand, within GFF392 at 383.001 kb on - strand, within GFF392 at 383.005 kb on - strand, within GFF392 at 383.028 kb on + strand, within GFF392 at 383.028 kb on + strand, within GFF392 at 383.036 kb on - strand, within GFF392 at 383.075 kb on - strand, within GFF392 at 383.076 kb on + strand, within GFF392 at 383.103 kb on + strand, within GFF392 at 383.103 kb on + strand, within GFF392 at 383.113 kb on + strand, within GFF392 at 383.116 kb on - strand, within GFF392 at 383.156 kb on - strand, within GFF392 at 383.156 kb on - strand, within GFF392 at 383.170 kb on + strand, within GFF392 at 383.187 kb on + strand, within GFF392 at 383.187 kb on + strand, within GFF392 at 383.246 kb on + strand, within GFF392 at 383.247 kb on + strand, within GFF392 at 383.274 kb on + strand, within GFF392 at 383.282 kb on - strand, within GFF392 at 383.325 kb on - strand, within GFF392 at 383.349 kb on - strand, within GFF392 at 383.353 kb on - strand, within GFF392 at 383.354 kb on - strand, within GFF392 at 383.359 kb on - strand, within GFF392 at 383.370 kb on - strand, within GFF392 at 383.380 kb on - strand, within GFF392 at 383.382 kb on + strand, within GFF392 at 383.388 kb on + strand, within GFF392 at 383.390 kb on - strand, within GFF392 at 383.390 kb on - strand, within GFF392 at 383.410 kb on + strand, within GFF392 at 383.420 kb on + strand, within GFF392 at 383.420 kb on + strand, within GFF392 at 383.420 kb on - strand, within GFF392 at 383.427 kb on + strand, within GFF392 at 383.428 kb on - strand, within GFF392 at 383.460 kb on + strand at 383.475 kb on - strand at 383.485 kb on - strand at 383.491 kb on + strand at 383.491 kb on - strand at 383.496 kb on + strand at 383.504 kb on - strand at 383.506 kb on + strand at 383.507 kb on - strand at 383.551 kb on + strand at 383.559 kb on + strand, within GFF393 at 383.564 kb on + strand, within GFF393 at 383.564 kb on + strand, within GFF393 at 383.567 kb on - strand, within GFF393 at 383.567 kb on - strand, within GFF393 at 383.572 kb on - strand, within GFF393 at 383.579 kb on - strand, within GFF393 at 383.580 kb on + strand, within GFF393 at 383.580 kb on + strand, within GFF393 at 383.588 kb on - strand, within GFF393 at 383.588 kb on - strand, within GFF393 at 383.602 kb on - strand, within GFF393 at 383.605 kb on + strand, within GFF393 at 383.607 kb on - strand, within GFF393 at 383.612 kb on + strand, within GFF393 at 383.649 kb on + strand, within GFF393 at 383.674 kb on + strand, within GFF393 at 383.696 kb on - strand, within GFF393 at 383.708 kb on - strand, within GFF393 at 383.720 kb on - strand, within GFF393 at 383.725 kb on + strand, within GFF393 at 383.725 kb on - strand, within GFF393 at 383.725 kb on - strand, within GFF393 at 383.725 kb on - strand, within GFF393 at 383.725 kb on - strand, within GFF393 at 383.727 kb on - strand, within GFF393 at 383.729 kb on + strand, within GFF393 at 383.733 kb on - strand, within GFF393 at 383.738 kb on - strand, within GFF393
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 382,341 - -0.7 382,341 - +0.8 382,350 - +0.3 382,407 + GFF391 0.16 -0.4 382,415 - GFF391 0.18 -0.0 382,415 - GFF391 0.18 -0.9 382,415 - GFF391 0.18 -0.8 382,417 + GFF391 0.18 -1.2 382,417 + GFF391 0.18 -0.6 382,419 + GFF391 0.19 -1.7 382,424 + GFF391 0.20 +0.7 382,424 + GFF391 0.20 +0.7 382,428 + GFF391 0.21 -1.0 382,432 + GFF391 0.22 -1.0 382,433 + GFF391 0.22 -1.3 382,448 - GFF391 0.26 +0.1 382,449 + GFF391 0.26 -0.3 382,457 - GFF391 0.28 -0.3 382,457 - GFF391 0.28 +0.3 382,457 - GFF391 0.28 +1.3 382,481 + GFF391 0.34 -0.9 382,481 + GFF391 0.34 -0.3 382,489 - GFF391 0.36 +0.2 382,510 - GFF391 0.41 -1.7 382,510 - GFF391 0.41 -1.1 382,510 - GFF391 0.41 +0.3 382,515 + GFF391 0.42 +1.3 382,547 + GFF391 0.50 -0.4 382,556 + GFF391 0.53 -2.0 382,569 - GFF391 0.56 -1.0 382,569 - GFF391 0.56 -0.9 382,574 + GFF391 0.57 -0.8 382,574 + GFF391 0.57 +0.5 382,574 + GFF391 0.57 -0.3 382,574 + GFF391 0.57 -0.5 382,574 + GFF391 0.57 -0.5 382,582 - GFF391 0.59 +0.2 382,582 - GFF391 0.59 -1.2 382,582 - GFF391 0.59 +1.3 382,587 - GFF391 0.60 -1.1 382,625 + GFF391 0.70 +1.2 382,625 + GFF391 0.70 -1.4 382,625 - GFF391 0.70 +0.6 382,633 - GFF391 0.72 -1.2 382,633 - GFF391 0.72 -0.3 382,633 - GFF391 0.72 -0.8 382,633 - GFF391 0.72 -1.9 382,661 + GFF391 0.79 -1.8 382,669 - GFF391 0.80 +0.3 382,669 - GFF391 0.80 +0.4 382,669 - GFF391 0.80 -0.5 382,669 - GFF391 0.80 -0.6 382,669 - GFF391 0.80 +0.9 382,675 + GFF391 0.82 -1.5 382,683 - GFF391 0.84 -0.3 382,683 - GFF391 0.84 -1.9 382,683 - GFF391 0.84 -1.4 382,683 - GFF391 0.84 +0.2 382,683 - GFF391 0.84 +0.6 382,686 + GFF391 0.85 -1.5 382,689 - GFF391 0.85 +1.1 382,690 + GFF391 0.86 -0.7 382,697 + GFF391 0.87 -0.1 382,700 + GFF391 0.88 -0.5 382,700 + GFF391 0.88 -2.6 382,700 + GFF391 0.88 +0.9 382,700 + GFF391 0.88 +0.8 382,700 + GFF391 0.88 +2.3 382,700 + GFF391 0.88 +0.6 382,708 - +0.9 382,723 - -0.1 382,731 + -1.5 382,739 - -2.6 382,740 + -1.5 382,750 - +0.8 382,762 + -0.4 382,765 + -0.6 382,775 - -0.0 382,787 - -0.9 382,792 - -1.0 382,817 + -1.1 382,818 + -0.0 382,818 + -2.3 382,818 + -0.5 382,818 + +0.4 382,818 + -1.3 382,818 + -1.9 382,826 - GFF392 0.11 +2.1 382,826 - GFF392 0.11 +0.5 382,826 - GFF392 0.11 -1.0 382,832 + GFF392 0.11 +0.7 382,835 - GFF392 0.12 -0.5 382,861 - GFF392 0.15 -0.0 382,869 - GFF392 0.16 -1.5 382,875 + GFF392 0.17 -0.4 382,878 - GFF392 0.17 -0.7 382,881 + GFF392 0.18 -0.9 382,884 - GFF392 0.18 -0.2 382,910 + GFF392 0.22 -2.0 382,920 + GFF392 0.23 +1.2 382,934 + GFF392 0.25 +0.1 382,934 + GFF392 0.25 -1.4 382,939 + GFF392 0.25 -0.7 382,947 - GFF392 0.26 -0.7 382,947 - GFF392 0.26 -0.9 382,952 - GFF392 0.27 +0.8 382,952 - GFF392 0.27 +0.7 382,958 + GFF392 0.28 -1.7 382,968 + GFF392 0.29 -2.1 382,971 - GFF392 0.30 -0.4 382,986 - GFF392 0.32 -0.8 382,997 + GFF392 0.33 -0.8 383,001 - GFF392 0.33 +0.1 383,005 - GFF392 0.34 +0.1 383,028 + GFF392 0.37 -0.2 383,028 + GFF392 0.37 -1.6 383,036 - GFF392 0.38 -0.5 383,075 - GFF392 0.43 -0.5 383,076 + GFF392 0.43 -1.1 383,103 + GFF392 0.47 +0.2 383,103 + GFF392 0.47 -0.2 383,113 + GFF392 0.48 +0.5 383,116 - GFF392 0.48 -0.8 383,156 - GFF392 0.54 -0.3 383,156 - GFF392 0.54 +0.1 383,170 + GFF392 0.55 -0.6 383,187 + GFF392 0.58 -0.7 383,187 + GFF392 0.58 +0.3 383,246 + GFF392 0.65 -1.3 383,247 + GFF392 0.65 -0.5 383,274 + GFF392 0.69 -0.0 383,282 - GFF392 0.70 +1.1 383,325 - GFF392 0.76 -0.4 383,349 - GFF392 0.79 -0.8 383,353 - GFF392 0.79 -0.7 383,354 - GFF392 0.79 -0.2 383,359 - GFF392 0.80 -2.2 383,370 - GFF392 0.82 +0.2 383,380 - GFF392 0.83 -1.4 383,382 + GFF392 0.83 -1.2 383,388 + GFF392 0.84 -0.7 383,390 - GFF392 0.84 -1.3 383,390 - GFF392 0.84 +1.7 383,410 + GFF392 0.87 +0.9 383,420 + GFF392 0.88 -0.0 383,420 + GFF392 0.88 -0.1 383,420 - GFF392 0.88 -1.2 383,427 + GFF392 0.89 +1.0 383,428 - GFF392 0.89 -0.9 383,460 + -2.5 383,475 - -0.7 383,485 - -0.6 383,491 + +1.7 383,491 - -1.4 383,496 + -0.2 383,504 - -1.2 383,506 + +1.1 383,507 - -0.8 383,551 + -1.2 383,559 + GFF393 0.11 -0.2 383,564 + GFF393 0.12 -1.5 383,564 + GFF393 0.12 -1.0 383,567 - GFF393 0.13 -1.2 383,567 - GFF393 0.13 -0.5 383,572 - GFF393 0.14 -0.6 383,579 - GFF393 0.16 -0.4 383,580 + GFF393 0.17 -2.5 383,580 + GFF393 0.17 +1.3 383,588 - GFF393 0.19 -2.0 383,588 - GFF393 0.19 +0.6 383,602 - GFF393 0.23 +0.8 383,605 + GFF393 0.24 -0.9 383,607 - GFF393 0.25 -1.1 383,612 + GFF393 0.26 -1.0 383,649 + GFF393 0.37 -0.1 383,674 + GFF393 0.44 -0.2 383,696 - GFF393 0.51 -0.4 383,708 - GFF393 0.54 +0.6 383,720 - GFF393 0.58 +0.6 383,725 + GFF393 0.59 +1.6 383,725 - GFF393 0.59 -0.7 383,725 - GFF393 0.59 +0.4 383,725 - GFF393 0.59 +0.6 383,725 - GFF393 0.59 -0.1 383,727 - GFF393 0.60 -1.4 383,729 + GFF393 0.60 -1.1 383,733 - GFF393 0.61 -2.2 383,738 - GFF393 0.63 -0.1
Or see this region's nucleotide sequence