Strain Fitness in Sphingobium sp. HT1-2 around GFF3864

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,906,155	+		GFF3863	0.12	-1.8
3,906,192	+		GFF3863	0.15	+0.1
3,906,261	+		GFF3863	0.22	+0.5
3,906,266	+		GFF3863	0.22	-0.2
3,906,268	+		GFF3863	0.23	-1.1
3,906,269	-		GFF3863	0.23	-1.7
3,906,269	-		GFF3863	0.23	-1.3
3,906,290	-		GFF3863	0.25	-1.4
3,906,301	+		GFF3863	0.26	-0.2
3,906,319	+		GFF3863	0.28	-0.8
3,906,325	+		GFF3863	0.28	-1.4
3,906,333	+		GFF3863	0.29	+0.3
3,906,338	+		GFF3863	0.30	+0.9
3,906,338	-		GFF3863	0.30	-0.6
3,906,343	+		GFF3863	0.30	+0.6
3,906,346	-		GFF3863	0.30	-1.1
3,906,347	+		GFF3863	0.30	+0.7
3,906,351	-		GFF3863	0.31	-0.7
3,906,367	-		GFF3863	0.32	+1.4
3,906,369	+		GFF3863	0.33	+0.5
3,906,379	+		GFF3863	0.34	-1.2
3,906,393	+		GFF3863	0.35	-1.3
3,906,398	+		GFF3863	0.36	-1.1
3,906,403	+		GFF3863	0.36	+1.8
3,906,406	-		GFF3863	0.36	+1.6
3,906,411	-		GFF3863	0.37	-1.0
3,906,451	-		GFF3863	0.41	-0.6
3,906,469	+		GFF3863	0.43	-0.9
3,906,477	+		GFF3863	0.43	-0.7
3,906,477	-		GFF3863	0.43	-0.9
3,906,477	-		GFF3863	0.43	-0.9
3,906,506	+		GFF3863	0.46	-0.9
3,906,514	-		GFF3863	0.47	+0.3
3,906,514	-		GFF3863	0.47	+0.5
3,906,514	-		GFF3863	0.47	+0.6
3,906,546	-		GFF3863	0.50	+0.6
3,906,557	+		GFF3863	0.51	+0.9
3,906,584	+		GFF3863	0.54	+0.6
3,906,609	+		GFF3863	0.56	+1.5
3,906,617	-		GFF3863	0.57	+0.9
3,906,638	-		GFF3863	0.59	-0.1
3,906,647	+		GFF3863	0.60	+1.2
3,906,647	+		GFF3863	0.60	+0.8
3,906,647	+		GFF3863	0.60	-0.8
3,906,647	+		GFF3863	0.60	-0.8
3,906,647	+		GFF3863	0.60	-0.4
3,906,647	+		GFF3863	0.60	-0.7
3,906,647	+		GFF3863	0.60	-1.7
3,906,647	+		GFF3863	0.60	+0.1
3,906,655	-		GFF3863	0.61	-0.9
3,906,655	-		GFF3863	0.61	-0.4
3,906,655	-		GFF3863	0.61	-0.4
3,906,655	-		GFF3863	0.61	+0.3
3,906,662	+		GFF3863	0.62	-1.8
3,906,662	+		GFF3863	0.62	-0.8
3,906,677	-		GFF3863	0.63	-0.1
3,906,688	+		GFF3863	0.64	-1.6
3,906,695	+		GFF3863	0.65	-0.5
3,906,695	+		GFF3863	0.65	-1.4
3,906,703	-		GFF3863	0.66	-0.2
3,906,722	+		GFF3863	0.67	+1.2
3,906,730	-		GFF3863	0.68	-1.1
3,906,730	-		GFF3863	0.68	-0.2
3,906,730	-		GFF3863	0.68	-0.7
3,906,730	-		GFF3863	0.68	-1.1
3,906,730	-		GFF3863	0.68	-0.5
3,906,778	+		GFF3863	0.73	+0.3
3,906,792	-		GFF3863	0.74	+0.1
3,906,799	-		GFF3863	0.75	+0.3
3,906,804	+		GFF3863	0.76	-2.1
3,906,804	+		GFF3863	0.76	+0.8
3,906,812	-		GFF3863	0.76	+0.6
3,906,812	-		GFF3863	0.76	-1.5
3,906,830	+		GFF3863	0.78	-1.5
3,906,830	+		GFF3863	0.78	-1.6
3,906,838	-		GFF3863	0.79	+0.5
3,906,838	-		GFF3863	0.79	-1.4
3,906,838	-		GFF3863	0.79	+0.5
3,906,838	-		GFF3863	0.79	+1.4
3,906,848	+		GFF3863	0.80	-0.1
3,906,850	+		GFF3863	0.80	+0.1
3,906,901	+		GFF3863	0.85	-0.0
3,906,901	+		GFF3863	0.85	-1.8
3,906,901	+		GFF3863	0.85	+0.4
3,906,901	+		GFF3863	0.85	+2.1
3,906,909	-		GFF3863	0.86	-1.0
3,906,909	-		GFF3863	0.86	-0.4
3,906,909	-		GFF3863	0.86	+0.1
3,906,909	-		GFF3863	0.86	+1.5
3,906,909	-		GFF3863	0.86	+0.2
3,906,911	-		GFF3863	0.86	-0.6
3,906,913	+		GFF3863	0.86	-2.4
3,906,926	+		GFF3863	0.88	-0.5
3,906,926	+		GFF3863	0.88	-0.5
3,906,934	-		GFF3863	0.88	-0.5
3,906,934	-		GFF3863	0.88	+1.4
3,906,945	+		GFF3863	0.89	-0.4
3,906,951	-				-0.3
3,906,970	+				-1.2
3,906,972	+				+1.2
3,906,984	-				-0.4
3,906,999	+				-0.1
3,907,018	+				+0.8
3,907,026	-				+0.1
3,907,026	-				-1.2
3,907,026	-				-1.4
3,907,031	+				-0.8
3,907,039	-				-1.5
3,907,050	+				+0.8
3,907,054	-				-0.7
3,907,058	-				+0.5
3,907,131	+				+0.3
3,907,133	+				-1.2
3,907,133	+				-0.2
3,907,139	-				+0.6
3,907,139	-				+0.4
3,907,158	+				+0.3
3,907,158	+				-0.0
3,907,169	-				-0.2
3,907,175	+				-1.0
3,907,183	-				+0.4
3,907,188	-				-0.6
3,907,190	+				-0.2
3,907,190	+				+0.6
3,907,191	+				-0.3
3,907,199	-				-0.9
3,907,199	-				-1.2
3,907,201	+				-0.2
3,907,201	+				+1.2
3,907,201	+				+1.6
3,907,201	+				-1.2
3,907,201	+				-0.9
3,907,209	-				-1.6
3,907,209	-				-0.1
3,907,209	-				-2.2
3,907,214	-		GFF3864	0.10	-0.4
3,907,214	-		GFF3864	0.10	+0.2
3,907,217	+		GFF3864	0.11	-0.6
3,907,218	-		GFF3864	0.11	-1.8
3,907,235	+		GFF3864	0.13	-0.2
3,907,239	+		GFF3864	0.13	+0.6
3,907,256	+		GFF3864	0.16	+1.1
3,907,264	-		GFF3864	0.17	-0.2
3,907,264	-		GFF3864	0.17	-0.6
3,907,334	-		GFF3864	0.26	-2.0
3,907,345	+		GFF3864	0.27	+0.4
3,907,353	-		GFF3864	0.28	+1.5
3,907,360	+		GFF3864	0.29	-0.6
3,907,360	+		GFF3864	0.29	+0.5
3,907,391	+		GFF3864	0.33	+0.1
3,907,397	-		GFF3864	0.34	-0.8
3,907,408	+		GFF3864	0.36	-0.9
3,907,409	+		GFF3864	0.36	-0.5
3,907,409	+		GFF3864	0.36	-0.6
3,907,412	-		GFF3864	0.36	-0.9
3,907,412	-		GFF3864	0.36	-0.2
3,907,412	-		GFF3864	0.36	-1.8
3,907,412	-		GFF3864	0.36	-0.7
3,907,417	-		GFF3864	0.37	-0.8
3,907,417	-		GFF3864	0.37	-0.2
3,907,417	-		GFF3864	0.37	+0.4
3,907,426	-		GFF3864	0.38	-1.6
3,907,453	-		GFF3864	0.42	+0.4
3,907,455	+		GFF3864	0.42	-0.5
3,907,460	+		GFF3864	0.43	-1.6
3,907,466	+		GFF3864	0.43	-1.5
3,907,466	+		GFF3864	0.43	+0.8
3,907,466	+		GFF3864	0.43	-0.2
3,907,466	+		GFF3864	0.43	+0.6
3,907,469	-		GFF3864	0.44	-0.5
3,907,471	+		GFF3864	0.44	-0.6
3,907,474	-		GFF3864	0.44	+0.5
3,907,474	-		GFF3864	0.44	-0.3
3,907,474	-		GFF3864	0.44	-1.3
3,907,474	-		GFF3864	0.44	+0.5
3,907,474	-		GFF3864	0.44	+0.1
3,907,476	+		GFF3864	0.45	-0.9
3,907,476	+		GFF3864	0.45	-1.4
3,907,479	-		GFF3864	0.45	-1.1
3,907,484	-		GFF3864	0.46	-1.4
3,907,495	-		GFF3864	0.47	+0.2
3,907,495	-		GFF3864	0.47	-0.7
3,907,499	+		GFF3864	0.48	-0.1
3,907,507	-		GFF3864	0.49	+0.9
3,907,507	-		GFF3864	0.49	-0.4
3,907,507	-		GFF3864	0.49	+0.3
3,907,507	-		GFF3864	0.49	-1.7
3,907,523	+		GFF3864	0.51	+0.4
3,907,554	+		GFF3864	0.55	+0.8
3,907,556	+		GFF3864	0.55	-1.4
3,907,556	+		GFF3864	0.55	+0.5
3,907,559	+		GFF3864	0.56	+0.3
3,907,564	-		GFF3864	0.56	-0.6
3,907,564	-		GFF3864	0.56	-1.2
3,907,564	-		GFF3864	0.56	+0.4
3,907,564	-		GFF3864	0.56	+1.1
3,907,564	-		GFF3864	0.56	-0.1
3,907,564	-		GFF3864	0.56	-0.6
3,907,567	-		GFF3864	0.57	-0.4
3,907,569	-		GFF3864	0.57	-0.4
3,907,625	-		GFF3864	0.64	-0.0
3,907,628	+		GFF3864	0.65	+1.1
3,907,631	-		GFF3864	0.65	-0.2
3,907,638	+		GFF3864	0.66	-1.2
3,907,638	+		GFF3864	0.66	-1.4
3,907,638	+		GFF3864	0.66	-1.9
3,907,638	+		GFF3864	0.66	+0.4
3,907,638	+		GFF3864	0.66	+0.2
3,907,642	+		GFF3864	0.67	-0.7
3,907,646	-		GFF3864	0.67	-2.2
3,907,646	-		GFF3864	0.67	-0.8
3,907,646	-		GFF3864	0.67	+0.2
3,907,646	-		GFF3864	0.67	+0.2
3,907,646	-		GFF3864	0.67	-0.9
3,907,670	+		GFF3864	0.70	-0.4
3,907,672	-		GFF3864	0.70	+0.1
3,907,673	-		GFF3864	0.71	+1.1
3,907,680	-		GFF3864	0.72	+0.7
3,907,680	-		GFF3864	0.72	-1.1
3,907,700	+		GFF3864	0.74	-1.2
3,907,706	+		GFF3864	0.75	+1.5
3,907,708	-		GFF3864	0.75	-0.3
3,907,728	+		GFF3864	0.78	-0.9
3,907,734	-		GFF3864	0.79	+0.2
3,907,736	-		GFF3864	0.79	-1.4
3,907,736	-		GFF3864	0.79	+0.5
3,907,737	-		GFF3864	0.79	-0.0
3,907,739	+		GFF3864	0.79	-0.8
3,907,744	+		GFF3864	0.80	+0.3
3,907,747	-		GFF3864	0.80	+0.1
3,907,749	+		GFF3864	0.81	-0.5
3,907,781	+		GFF3864	0.85	+0.5
3,907,805	-		GFF3864	0.88	+0.5
3,907,809	+		GFF3864	0.89	-0.8
3,907,819	+		GFF3864	0.90	-1.1
3,907,827	-				-2.1
3,907,839	-				-0.2
3,907,843	+				-1.2
3,907,851	+				-0.9
3,907,851	+				-0.2
3,907,859	-				+0.6
3,907,859	-				-0.9
3,907,859	-				-0.8
3,907,859	-				-0.7
3,907,859	-				-1.0
3,907,869	-				-1.1
3,907,929	+				-3.0
3,907,966	+				+0.7
3,907,990	+				-0.4
3,907,998	+				+0.3
3,907,998	-				+1.2
3,908,003	+				-1.4
3,908,017	+				-0.9
3,908,017	+				-1.0
3,908,017	+				+1.1
3,908,017	+				-2.0
3,908,017	+				-1.5
3,908,017	+				+0.4
3,908,025	-				+1.3
3,908,025	-				-0.0
3,908,025	-				-0.2
3,908,025	-				-1.4
3,908,025	-				-2.1
3,908,025	-				+0.6
3,908,025	-				-2.1
3,908,025	-				-0.5
3,908,027	-				+0.4
3,908,075	+				+0.1
3,908,083	-				-1.4
3,908,083	-				+1.1
3,908,099	-				+0.1
3,908,105	+				+0.3
3,908,109	+				-1.4
3,908,117	+				-1.7
3,908,127	-				-0.4
3,908,161	+				-1.1
3,908,161	+				-0.7
3,908,161	+				-1.3
3,908,169	-				+0.1
3,908,169	-				-0.0
3,908,169	-				+0.3
3,908,184	-				-0.9
3,908,189	-				-1.4
3,908,210	+		GFF3865	0.12	+0.5
3,908,215	+		GFF3865	0.13	-0.6
3,908,215	+		GFF3865	0.13	-1.4
3,908,219	+		GFF3865	0.13	-1.7
3,908,223	-		GFF3865	0.13	+0.1
3,908,224	+		GFF3865	0.14	-0.5
3,908,229	+		GFF3865	0.14	-1.2
3,908,234	+		GFF3865	0.15	-1.2
3,908,239	+		GFF3865	0.15	-1.1
3,908,242	-		GFF3865	0.15	-1.7
3,908,242	-		GFF3865	0.15	-0.5
3,908,242	-		GFF3865	0.15	-0.1
3,908,259	-		GFF3865	0.17	-0.3
3,908,270	+		GFF3865	0.18	-0.8
3,908,273	-		GFF3865	0.19	-0.2
3,908,274	-		GFF3865	0.19	+0.3
3,908,278	-		GFF3865	0.19	-0.4
3,908,278	-		GFF3865	0.19	-1.3
3,908,291	-		GFF3865	0.21	+1.1
3,908,337	-		GFF3865	0.26	+0.0
3,908,343	+		GFF3865	0.26	+0.6
3,908,343	+		GFF3865	0.26	+1.7
3,908,343	+		GFF3865	0.26	-1.6
3,908,343	+		GFF3865	0.26	+0.3
3,908,343	+		GFF3865	0.26	-0.2
3,908,343	+		GFF3865	0.26	-0.9
3,908,351	-		GFF3865	0.27	-1.7
3,908,351	-		GFF3865	0.27	+1.6
3,908,351	-		GFF3865	0.27	-0.7
3,908,351	-		GFF3865	0.27	-0.5
3,908,351	-		GFF3865	0.27	-2.0
3,908,351	-		GFF3865	0.27	-0.8
3,908,353	-		GFF3865	0.27	+1.0
3,908,358	+		GFF3865	0.28	-0.5
3,908,358	+		GFF3865	0.28	-2.2
3,908,358	+		GFF3865	0.28	-1.9
3,908,358	+		GFF3865	0.28	-0.4
3,908,358	+		GFF3865	0.28	+0.9
3,908,358	+		GFF3865	0.28	+1.6
3,908,358	+		GFF3865	0.28	-1.4
3,908,363	+		GFF3865	0.28	-1.4
3,908,366	-		GFF3865	0.29	-1.2
3,908,366	-		GFF3865	0.29	-1.2
3,908,366	-		GFF3865	0.29	-0.6
3,908,366	-		GFF3865	0.29	+0.1
3,908,366	-		GFF3865	0.29	-0.2
3,908,370	+		GFF3865	0.29	-1.6
3,908,371	-		GFF3865	0.29	-1.4
3,908,382	+		GFF3865	0.30	-0.5
3,908,416	-		GFF3865	0.34	-0.8
3,908,419	+		GFF3865	0.34	-1.2
3,908,430	+		GFF3865	0.36	-0.3
3,908,452	+		GFF3865	0.38	-0.9
3,908,460	-		GFF3865	0.39	+0.9
3,908,460	-		GFF3865	0.39	+0.4
3,908,464	+		GFF3865	0.39	+0.7
3,908,464	+		GFF3865	0.39	-0.9
3,908,464	+		GFF3865	0.39	-0.7
3,908,464	+		GFF3865	0.39	-0.4
3,908,464	+		GFF3865	0.39	-1.6
3,908,467	-		GFF3865	0.40	-0.8
3,908,472	-		GFF3865	0.40	-1.3
3,908,472	-		GFF3865	0.40	-2.1
3,908,472	-		GFF3865	0.40	+0.5
3,908,477	-		GFF3865	0.41	+0.8
3,908,493	+		GFF3865	0.42	+0.8
3,908,508	+		GFF3865	0.44	+0.1
3,908,508	+		GFF3865	0.44	+1.1
3,908,508	+		GFF3865	0.44	+1.0
3,908,508	+		GFF3865	0.44	-0.5
3,908,508	+		GFF3865	0.44	-1.3
3,908,510	+		GFF3865	0.44	-0.8
3,908,510	+		GFF3865	0.44	-0.4
3,908,516	-		GFF3865	0.45	-1.3
3,908,516	-		GFF3865	0.45	-1.6
3,908,516	-		GFF3865	0.45	-0.2
3,908,516	-		GFF3865	0.45	+1.9
3,908,516	-		GFF3865	0.45	+0.3
3,908,522	+		GFF3865	0.45	+0.1
3,908,558	-		GFF3865	0.49	-1.8
3,908,574	-		GFF3865	0.51	-1.1
3,908,616	-		GFF3865	0.55	-0.8
3,908,641	-		GFF3865	0.58	+1.1
3,908,650	+		GFF3865	0.59	+0.3
3,908,650	+		GFF3865	0.59	+0.6
3,908,654	+		GFF3865	0.60	+1.1
3,908,745	-		GFF3865	0.69	-1.2
3,908,756	+		GFF3865	0.70	-0.2
3,908,777	-		GFF3865	0.73	+0.9
3,908,779	+		GFF3865	0.73	-1.2
3,908,779	+		GFF3865	0.73	-1.5
3,908,779	+		GFF3865	0.73	-1.4
3,908,787	-		GFF3865	0.74	-0.1
3,908,787	-		GFF3865	0.74	-1.0
3,908,787	-		GFF3865	0.74	-0.6
3,908,787	-		GFF3865	0.74	+0.7
3,908,787	-		GFF3865	0.74	-1.5
3,908,806	-		GFF3865	0.76	+0.2
3,908,821	-		GFF3865	0.77	+0.1
3,908,822	+		GFF3865	0.77	-1.5
3,908,825	-		GFF3865	0.78	-0.0
3,908,826	-		GFF3865	0.78	-1.3
3,908,831	-		GFF3865	0.78	-1.5
3,908,831	-		GFF3865	0.78	+0.1
3,908,853	+		GFF3865	0.81	-0.8
3,908,862	-		GFF3865	0.82	-2.0