Strain Fitness in Sphingobium sp. HT1-2 around GFF3823

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,862,848	+		GFF3822	0.36	-1.3
3,862,848	+		GFF3822	0.36	+0.8
3,862,849	+		GFF3822	0.36	-0.2
3,862,856	-		GFF3822	0.36	-0.2
3,862,866	+		GFF3822	0.37	+0.6
3,862,880	+		GFF3822	0.38	-0.5
3,862,884	-		GFF3822	0.38	-1.5
3,862,885	+		GFF3822	0.38	-1.9
3,862,885	+		GFF3822	0.38	-0.9
3,862,885	+		GFF3822	0.38	+1.0
3,862,885	+		GFF3822	0.38	-0.9
3,862,885	+		GFF3822	0.38	-0.8
3,862,885	+		GFF3822	0.38	-0.5
3,862,893	-		GFF3822	0.39	-0.5
3,862,893	-		GFF3822	0.39	-0.5
3,862,893	-		GFF3822	0.39	-1.8
3,862,893	-		GFF3822	0.39	-0.7
3,862,923	+		GFF3822	0.40	-0.1
3,862,931	-		GFF3822	0.41	-0.8
3,862,959	-		GFF3822	0.43	+0.5
3,862,976	+		GFF3822	0.44	-0.7
3,862,991	+		GFF3822	0.45	-0.6
3,863,005	+		GFF3822	0.46	-0.2
3,863,005	+		GFF3822	0.46	-1.2
3,863,010	+		GFF3822	0.46	-0.0
3,863,012	+		GFF3822	0.46	-0.9
3,863,020	-		GFF3822	0.47	-0.3
3,863,026	+		GFF3822	0.47	+0.1
3,863,028	+		GFF3822	0.47	-0.2
3,863,028	+		GFF3822	0.47	-0.3
3,863,034	-		GFF3822	0.47	-0.7
3,863,068	+		GFF3822	0.50	-0.3
3,863,087	-		GFF3822	0.51	-0.7
3,863,096	+		GFF3822	0.51	-2.5
3,863,096	+		GFF3822	0.51	-0.9
3,863,102	-		GFF3822	0.52	+1.1
3,863,104	-		GFF3822	0.52	-1.7
3,863,104	-		GFF3822	0.52	-0.3
3,863,104	-		GFF3822	0.52	+0.4
3,863,121	-		GFF3822	0.53	+1.0
3,863,126	-		GFF3822	0.53	-0.9
3,863,171	+		GFF3822	0.56	-0.9
3,863,176	+		GFF3822	0.56	+0.1
3,863,176	+		GFF3822	0.56	-0.6
3,863,176	+		GFF3822	0.56	-0.6
3,863,176	+		GFF3822	0.56	+0.7
3,863,176	+		GFF3822	0.56	-2.2
3,863,176	+		GFF3822	0.56	-1.1
3,863,176	+		GFF3822	0.56	-1.0
3,863,179	-		GFF3822	0.57	-1.2
3,863,183	+		GFF3822	0.57	+0.2
3,863,183	+		GFF3822	0.57	-1.3
3,863,183	+		GFF3822	0.57	-2.0
3,863,184	-		GFF3822	0.57	-1.8
3,863,184	-		GFF3822	0.57	-0.7
3,863,184	-		GFF3822	0.57	-0.1
3,863,184	-		GFF3822	0.57	-1.6
3,863,191	-		GFF3822	0.57	-0.5
3,863,193	+		GFF3822	0.57	+0.2
3,863,244	+		GFF3822	0.61	-0.6
3,863,275	+		GFF3822	0.63	+1.0
3,863,283	-		GFF3822	0.63	+0.4
3,863,283	-		GFF3822	0.63	-0.9
3,863,283	-		GFF3822	0.63	+1.3
3,863,326	-		GFF3822	0.66	-0.6
3,863,351	+		GFF3822	0.67	+0.2
3,863,351	+		GFF3822	0.67	-1.4
3,863,354	-		GFF3822	0.67	-0.1
3,863,354	-		GFF3822	0.67	+0.7
3,863,374	+		GFF3822	0.69	+0.5
3,863,378	-		GFF3822	0.69	+0.7
3,863,380	+		GFF3822	0.69	+0.5
3,863,380	+		GFF3822	0.69	-0.2
3,863,380	+		GFF3822	0.69	-0.2
3,863,380	+		GFF3822	0.69	-0.9
3,863,416	+		GFF3822	0.71	-0.6
3,863,502	+		GFF3822	0.77	+0.7
3,863,507	+		GFF3822	0.77	+0.1
3,863,507	+		GFF3822	0.77	-0.6
3,863,510	-		GFF3822	0.77	-0.5
3,863,532	-		GFF3822	0.79	+0.8
3,863,595	-		GFF3822	0.83	+0.2
3,863,610	-		GFF3822	0.84	-0.5
3,863,610	-		GFF3822	0.84	+0.5
3,863,613	+		GFF3822	0.84	-1.5
3,863,656	+		GFF3822	0.86	-0.8
3,863,664	-		GFF3822	0.87	-0.2
3,863,671	+		GFF3822	0.87	-1.2
3,863,671	+		GFF3822	0.87	+0.9
3,863,671	+		GFF3822	0.87	-1.6
3,863,671	+		GFF3822	0.87	-1.0
3,863,671	+		GFF3822	0.87	-1.1
3,863,679	-		GFF3822	0.88	-2.1
3,863,679	-		GFF3822	0.88	-1.9
3,863,692	+		GFF3822	0.89	-1.5
3,863,692	+		GFF3822	0.89	-0.1
3,863,693	+		GFF3822	0.89	+1.2
3,863,700	-		GFF3822	0.89	+0.3
3,863,700	-		GFF3822	0.89	-1.3
3,863,700	-		GFF3822	0.89	-0.6
3,863,714	-				-1.7
3,863,728	+				-0.2
3,863,773	-				-0.6
3,863,794	+				-0.2
3,863,794	+				-1.7
3,863,794	+				-0.4
3,863,802	-				-1.4
3,863,802	-				+2.1
3,863,802	-				+0.5
3,863,802	-				-1.1
3,863,804	+				-0.2
3,863,808	-				+1.4
3,863,809	+				-0.6
3,863,809	+				+0.3
3,863,809	+				+1.2
3,863,809	+				+0.6
3,863,817	-				-1.5
3,863,817	-				-1.1
3,863,817	-				+0.4
3,863,817	-				+0.4
3,863,817	-				-1.5
3,863,817	-				-1.0
3,863,817	-				+0.4
3,863,822	-				-0.6
3,863,846	-				-1.2
3,863,864	-				-0.6
3,863,868	+				-1.2
3,863,868	+				-1.3
3,863,869	+				-1.7
3,863,869	+				-0.9
3,863,907	-				-1.2
3,863,907	-				-0.7
3,863,948	-		GFF3823	0.15	+0.9
3,863,948	-		GFF3823	0.15	-0.6
3,863,970	-		GFF3823	0.18	+1.1
3,863,989	+		GFF3823	0.21	-0.4
3,863,997	-		GFF3823	0.22	-0.8
3,863,997	-		GFF3823	0.22	-0.6
3,864,016	+		GFF3823	0.25	-0.9
3,864,024	-		GFF3823	0.26	-0.3
3,864,024	-		GFF3823	0.26	+0.1
3,864,029	+		GFF3823	0.27	+0.1
3,864,058	+		GFF3823	0.31	+0.7
3,864,099	+		GFF3823	0.37	-0.6
3,864,124	-		GFF3823	0.40	-1.3
3,864,136	+		GFF3823	0.42	-1.5
3,864,177	+		GFF3823	0.48	+1.0
3,864,185	-		GFF3823	0.49	-1.9
3,864,192	+		GFF3823	0.50	+0.1
3,864,192	+		GFF3823	0.50	-0.2
3,864,192	+		GFF3823	0.50	-0.8
3,864,192	+		GFF3823	0.50	+0.1
3,864,192	+		GFF3823	0.50	-1.4
3,864,200	-		GFF3823	0.51	+0.8
3,864,200	-		GFF3823	0.51	+0.2
3,864,200	-		GFF3823	0.51	-0.5
3,864,200	-		GFF3823	0.51	-0.8
3,864,200	-		GFF3823	0.51	-1.3
3,864,202	+		GFF3823	0.51	-1.3
3,864,205	-		GFF3823	0.52	+2.0
3,864,238	+		GFF3823	0.56	-0.4
3,864,246	-		GFF3823	0.57	-0.2
3,864,246	-		GFF3823	0.57	-0.4
3,864,267	+		GFF3823	0.60	+0.9
3,864,270	-		GFF3823	0.61	-0.8
3,864,270	-		GFF3823	0.61	-2.5
3,864,270	-		GFF3823	0.61	-0.2
3,864,270	-		GFF3823	0.61	-1.9
3,864,270	-		GFF3823	0.61	-0.9
3,864,273	+		GFF3823	0.61	-0.9
3,864,288	-		GFF3823	0.63	-0.2
3,864,299	+		GFF3823	0.65	-1.3
3,864,299	+		GFF3823	0.65	-0.2
3,864,307	-		GFF3823	0.66	-0.7
3,864,307	-		GFF3823	0.66	+1.5
3,864,307	-		GFF3823	0.66	+0.0
3,864,307	-		GFF3823	0.66	-0.1
3,864,346	+		GFF3823	0.72	-0.9
3,864,356	+		GFF3823	0.73	-1.0
3,864,356	+		GFF3823	0.73	-0.4
3,864,356	+		GFF3823	0.73	+0.9
3,864,356	+		GFF3823	0.73	-0.6
3,864,356	+		GFF3823	0.73	+0.1
3,864,356	+		GFF3823	0.73	-1.4
3,864,364	-		GFF3823	0.74	-1.8
3,864,364	-		GFF3823	0.74	-0.2
3,864,364	-		GFF3823	0.74	-0.4
3,864,364	-		GFF3823	0.74	-0.7
3,864,364	-		GFF3823	0.74	-0.9
3,864,364	-		GFF3823	0.74	-1.4
3,864,379	+		GFF3823	0.76	-0.6
3,864,395	+		GFF3823	0.79	-0.9
3,864,395	+		GFF3823	0.79	+0.5
3,864,403	-		GFF3823	0.80	-1.0
3,864,412	+		GFF3823	0.81	-1.1
3,864,436	+		GFF3823	0.84	+0.9
3,864,444	-		GFF3823	0.86	+0.6
3,864,448	+		GFF3823	0.86	-0.2
3,864,448	+		GFF3823	0.86	+0.8
3,864,448	+		GFF3823	0.86	-0.9
3,864,448	+		GFF3823	0.86	-1.4
3,864,448	+		GFF3823	0.86	-1.7
3,864,448	+		GFF3823	0.86	-0.6
3,864,448	+		GFF3823	0.86	+0.7
3,864,448	+		GFF3823	0.86	-0.0
3,864,448	+		GFF3823	0.86	-0.5
3,864,448	+		GFF3823	0.86	-0.2
3,864,448	+		GFF3823	0.86	-1.0
3,864,448	+		GFF3823	0.86	-1.4
3,864,448	+		GFF3823	0.86	-1.4
3,864,448	+		GFF3823	0.86	+0.5
3,864,448	+		GFF3823	0.86	+0.8
3,864,448	+		GFF3823	0.86	-0.5
3,864,448	+		GFF3823	0.86	-1.1
3,864,448	+		GFF3823	0.86	+0.5
3,864,448	+		GFF3823	0.86	+0.7
3,864,448	+		GFF3823	0.86	+0.2
3,864,448	+		GFF3823	0.86	-0.7
3,864,448	+		GFF3823	0.86	-1.5
3,864,448	+		GFF3823	0.86	+0.4
3,864,448	+		GFF3823	0.86	-0.3
3,864,448	+		GFF3823	0.86	-1.3
3,864,448	+		GFF3823	0.86	-0.9
3,864,448	+		GFF3823	0.86	-1.8
3,864,450	+		GFF3823	0.86	-0.6
3,864,451	-		GFF3823	0.87	-2.0
3,864,451	-		GFF3823	0.87	-1.0
3,864,456	-		GFF3823	0.87	-0.2
3,864,456	-		GFF3823	0.87	-0.9
3,864,456	-		GFF3823	0.87	-0.7
3,864,456	-		GFF3823	0.87	+0.4
3,864,456	-		GFF3823	0.87	-0.6
3,864,456	-		GFF3823	0.87	-1.1
3,864,456	-		GFF3823	0.87	-0.6
3,864,456	-		GFF3823	0.87	+0.7
3,864,456	-		GFF3823	0.87	-2.3
3,864,456	-		GFF3823	0.87	-1.9
3,864,456	-		GFF3823	0.87	-0.9
3,864,456	-		GFF3823	0.87	-0.9
3,864,456	-		GFF3823	0.87	-1.2
3,864,456	-		GFF3823	0.87	-1.4
3,864,456	-		GFF3823	0.87	-0.7
3,864,456	-		GFF3823	0.87	-1.6
3,864,456	-		GFF3823	0.87	-0.4
3,864,456	-		GFF3823	0.87	+0.2
3,864,456	-		GFF3823	0.87	-0.7
3,864,456	-		GFF3823	0.87	-0.4
3,864,456	-		GFF3823	0.87	-1.4
3,864,456	-		GFF3823	0.87	-0.2
3,864,456	-		GFF3823	0.87	-0.9
3,864,456	-		GFF3823	0.87	-2.0
3,864,456	-		GFF3823	0.87	+0.4
3,864,456	-		GFF3823	0.87	-0.2
3,864,456	-		GFF3823	0.87	+0.6
3,864,456	-		GFF3823	0.87	-0.2
3,864,456	-		GFF3823	0.87	-0.2
3,864,456	-		GFF3823	0.87	-0.5
3,864,456	-		GFF3823	0.87	+0.3
3,864,467	+		GFF3823	0.89	-0.9
3,864,468	+		GFF3823	0.89	-0.5
3,864,469	+		GFF3823	0.89	-2.1
3,864,491	+				-0.3
3,864,498	+				+0.3
3,864,499	-				-0.5
3,864,517	+				-0.1
3,864,525	-				-0.6
3,864,527	+				-1.2
3,864,541	+				-0.2
3,864,541	+				-0.5
3,864,560	-				-0.0
3,864,574	-				-1.5
3,864,589	+				-0.5
3,864,589	+				-1.1
3,864,589	+				-0.6
3,864,589	+				-0.7
3,864,589	+				-1.2
3,864,597	-				-1.1
3,864,597	-				-0.9
3,864,668	+				+0.1
3,864,677	-				-2.8
3,864,700	+		GFF3824	0.24	-0.0
3,864,707	+		GFF3824	0.30	-0.2
3,864,707	+		GFF3824	0.30	-1.3
3,864,707	+		GFF3824	0.30	-1.2
3,864,707	+		GFF3824	0.30	-0.6
3,864,707	+		GFF3824	0.30	+1.8
3,864,707	+		GFF3824	0.30	+0.4
3,864,707	+		GFF3824	0.30	+0.5
3,864,707	+		GFF3824	0.30	-0.0
3,864,707	+		GFF3824	0.30	-1.2
3,864,707	+		GFF3824	0.30	+0.1
3,864,707	+		GFF3824	0.30	-0.7
3,864,708	+		GFF3824	0.31	+1.1
3,864,708	-		GFF3824	0.31	-2.2
3,864,715	-		GFF3824	0.37	-0.7
3,864,715	-		GFF3824	0.37	-0.9
3,864,715	-		GFF3824	0.37	-0.7
3,864,715	-		GFF3824	0.37	+0.6
3,864,715	-		GFF3824	0.37	+0.9
3,864,715	-		GFF3824	0.37	+1.1
3,864,715	-		GFF3824	0.37	+1.3
3,864,715	-		GFF3824	0.37	-1.7
3,864,715	-		GFF3824	0.37	+0.6
3,864,715	-		GFF3824	0.37	-0.2
3,864,715	-		GFF3824	0.37	+0.0
3,864,715	-		GFF3824	0.37	-0.5
3,864,715	-		GFF3824	0.37	-0.5
3,864,715	-		GFF3824	0.37	-0.6
3,864,725	-		GFF3824	0.46	-0.5
3,864,739	-		GFF3824	0.58	-0.7
3,864,752	+		GFF3824	0.69	+0.1
3,864,771	-		GFF3824	0.86	-0.7
3,864,781	-				-0.5
3,864,820	+				-0.6
3,864,820	+				-0.3
3,864,820	+				-1.0
3,864,828	-				-0.4
3,864,830	-				-1.2
3,864,838	-				-1.6
3,864,844	-				+0.4
3,864,860	-				-1.6
3,864,865	+				-1.6
3,864,865	+				-0.4
3,864,865	+				-0.5
3,864,865	+				-0.5
3,864,870	+				-1.1
3,864,870	+				-0.2
3,864,873	-				-2.2
3,864,873	-				-2.0
3,864,873	-				-1.7
3,864,898	+				-0.5
3,864,898	+				+0.4
3,864,898	+				+0.6
3,864,898	+				-2.0
3,864,906	-				-0.5
3,864,911	+				-0.8
3,864,916	+				+0.1
3,864,924	-				+0.1
3,864,924	-				-0.0
3,864,946	-				-2.4
3,864,960	-				+1.6
3,864,973	+				-0.1
3,865,032	+		GFF3825	0.13	-0.3
3,865,037	+		GFF3825	0.13	-0.2
3,865,039	-		GFF3825	0.13	-0.1
3,865,042	+		GFF3825	0.13	+0.2
3,865,042	+		GFF3825	0.13	+0.2
3,865,050	-		GFF3825	0.14	-0.6
3,865,053	+		GFF3825	0.14	+0.8
3,865,053	+		GFF3825	0.14	-0.1
3,865,058	+		GFF3825	0.14	+0.6
3,865,061	-		GFF3825	0.14	-0.0
3,865,066	-		GFF3825	0.15	+0.5
3,865,078	-		GFF3825	0.15	-2.0
3,865,100	+		GFF3825	0.17	-0.1
3,865,122	+		GFF3825	0.18	-0.4
3,865,135	+		GFF3825	0.19	-1.1
3,865,135	+		GFF3825	0.19	-0.0
3,865,135	+		GFF3825	0.19	+1.1
3,865,135	+		GFF3825	0.19	-0.5
3,865,135	+		GFF3825	0.19	+0.7
3,865,141	+		GFF3825	0.19	-0.6
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