Strain Fitness in Sphingobium sp. HT1-2 around GFF3821

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,860,738	+				-0.3
3,860,743	+				-0.8
3,860,745	-				-0.2
3,860,818	-				-0.3
3,860,823	-				-0.9
3,860,825	+				+1.2
3,860,825	+				-0.3
3,860,825	+				+1.0
3,860,825	+				+0.4
3,860,825	+				-2.8
3,860,825	+				+0.2
3,860,825	+				-0.3
3,860,825	+				-1.0
3,860,825	+				-0.8
3,860,825	+				-0.3
3,860,825	+				-0.5
3,860,825	+				-0.6
3,860,825	+				-0.7
3,860,833	+				-1.3
3,860,833	-				+1.0
3,860,833	-				+0.4
3,860,833	-				+0.1
3,860,833	-				+1.2
3,860,833	-				+0.0
3,860,833	-				-0.2
3,860,833	-				-2.1
3,860,833	-				-0.9
3,860,833	-				+0.7
3,860,833	-				-0.5
3,860,833	-				-0.6
3,860,833	-				+0.9
3,860,833	-				+0.4
3,860,835	+				+0.5
3,860,835	+				-0.5
3,860,835	+				+1.3
3,860,835	+				-0.3
3,860,835	+				-0.2
3,860,835	+				-0.9
3,860,835	+				-0.1
3,860,835	+				-1.7
3,860,835	+				-0.0
3,860,835	+				+1.3
3,860,835	+				-0.3
3,860,835	+				-0.2
3,860,843	-				-0.9
3,860,843	-				-0.2
3,860,843	-				+0.5
3,860,843	-				-1.3
3,860,843	-				-1.5
3,860,843	-				-0.7
3,860,843	-				+0.2
3,860,843	-				-0.2
3,860,843	-				+0.4
3,860,843	-				+1.2
3,860,843	-				-0.2
3,860,843	-				-0.2
3,860,843	-				+0.8
3,860,843	-				-0.2
3,860,843	-				-0.8
3,860,843	-				-1.4
3,860,843	-				-0.0
3,860,870	-				-0.9
3,860,933	-		GFF3820	0.15	+1.5
3,860,952	+		GFF3820	0.17	-0.4
3,860,952	+		GFF3820	0.17	-0.5
3,860,960	-		GFF3820	0.18	-2.4
3,860,965	+		GFF3820	0.19	-0.9
3,860,965	+		GFF3820	0.19	-2.3
3,860,992	-		GFF3820	0.22	-1.0
3,860,997	-		GFF3820	0.22	-1.2
3,861,007	+		GFF3820	0.23	-0.1
3,861,007	+		GFF3820	0.23	-1.3
3,861,007	+		GFF3820	0.23	+0.4
3,861,015	-		GFF3820	0.24	+1.5
3,861,015	-		GFF3820	0.24	-1.2
3,861,015	-		GFF3820	0.24	+0.2
3,861,017	-		GFF3820	0.24	-0.5
3,861,019	+		GFF3820	0.24	+0.5
3,861,019	+		GFF3820	0.24	-1.7
3,861,027	-		GFF3820	0.25	-1.4
3,861,030	+		GFF3820	0.26	-1.7
3,861,038	+		GFF3820	0.26	+1.7
3,861,046	-		GFF3820	0.27	-0.6
3,861,062	+		GFF3820	0.29	-0.4
3,861,065	-		GFF3820	0.29	-0.2
3,861,070	-		GFF3820	0.30	+0.7
3,861,092	-		GFF3820	0.32	-1.7
3,861,094	+		GFF3820	0.32	-0.0
3,861,102	-		GFF3820	0.33	-0.5
3,861,124	+		GFF3820	0.36	-1.6
3,861,124	+		GFF3820	0.36	+0.9
3,861,124	+		GFF3820	0.36	-0.9
3,861,128	-		GFF3820	0.36	-0.6
3,861,132	-		GFF3820	0.36	-0.7
3,861,132	-		GFF3820	0.36	-0.1
3,861,150	+		GFF3820	0.38	+0.8
3,861,163	-		GFF3820	0.40	-1.5
3,861,168	-		GFF3820	0.40	-1.3
3,861,185	+		GFF3820	0.42	-1.4
3,861,190	+		GFF3820	0.43	+1.4
3,861,192	+		GFF3820	0.43	-1.2
3,861,201	+		GFF3820	0.44	+0.0
3,861,201	+		GFF3820	0.44	+0.4
3,861,201	+		GFF3820	0.44	-0.7
3,861,201	+		GFF3820	0.44	+0.4
3,861,209	-		GFF3820	0.45	+1.2
3,861,209	-		GFF3820	0.45	-1.7
3,861,209	-		GFF3820	0.45	+0.4
3,861,209	-		GFF3820	0.45	+0.0
3,861,209	-		GFF3820	0.45	-0.5
3,861,211	+		GFF3820	0.45	+0.4
3,861,231	+		GFF3820	0.47	-1.3
3,861,262	-		GFF3820	0.50	-0.1
3,861,275	+		GFF3820	0.52	-0.3
3,861,275	+		GFF3820	0.52	-1.4
3,861,275	+		GFF3820	0.52	-0.2
3,861,275	+		GFF3820	0.52	-0.1
3,861,275	+		GFF3820	0.52	+1.2
3,861,275	+		GFF3820	0.52	-1.9
3,861,283	+		GFF3820	0.53	-0.5
3,861,283	-		GFF3820	0.53	-2.3
3,861,299	-		GFF3820	0.54	-1.5
3,861,324	+		GFF3820	0.57	-1.3
3,861,334	-		GFF3820	0.58	+0.5
3,861,385	-		GFF3820	0.63	-0.5
3,861,398	-		GFF3820	0.65	-0.6
3,861,405	-		GFF3820	0.65	+0.7
3,861,435	+		GFF3820	0.69	-0.5
3,861,456	+		GFF3820	0.71	-1.2
3,861,464	-		GFF3820	0.72	-0.5
3,861,475	+		GFF3820	0.73	+1.0
3,861,475	+		GFF3820	0.73	-1.3
3,861,483	-		GFF3820	0.74	+0.4
3,861,498	-		GFF3820	0.75	+0.1
3,861,568	+		GFF3820	0.83	-1.7
3,861,569	-		GFF3820	0.83	-1.4
3,861,581	-		GFF3820	0.84	-0.6
3,861,586	-		GFF3820	0.85	-0.5
3,861,586	-		GFF3820	0.85	-0.4
3,861,588	-		GFF3820	0.85	-1.6
3,861,608	-		GFF3820	0.87	+1.1
3,861,609	-		GFF3820	0.87	-0.9
3,861,621	+		GFF3820	0.88	+0.4
3,861,629	-		GFF3820	0.89	+1.1
3,861,629	-		GFF3820	0.89	+0.3
3,861,648	-				-0.9
3,861,660	-				-1.1
3,861,674	-				+0.1
3,861,676	+				-0.2
3,861,684	-				-1.5
3,861,684	-				-0.0
3,861,684	-				+0.7
3,861,694	-				+0.2
3,861,694	-				+0.6
3,861,694	-				+2.3
3,861,694	-				+0.1
3,861,704	-				-0.8
3,861,705	+				-1.1
3,861,705	+				-0.5
3,861,705	+				-0.6
3,861,706	+				+0.1
3,861,709	-				+0.1
3,861,713	-				-1.5
3,861,713	-				-0.4
3,861,713	-				-1.0
3,861,724	+				-0.6
3,861,729	+				-2.2
3,861,732	-				-0.3
3,861,734	+				-0.9
3,861,737	-				+0.1
3,861,737	-				+0.1
3,861,737	-				+0.1
3,862,163	+				+1.5
3,862,166	-				+0.7
3,862,166	-				-1.6
3,862,237	-				-0.2
3,862,241	+				-0.5
3,862,256	+				-0.1
3,862,256	+				+0.4
3,862,264	-				+0.8
3,862,264	-				+1.1
3,862,311	+				-0.6
3,862,311	+				+2.0
3,862,311	+				-0.3
3,862,311	+				-0.4
3,862,311	+				+0.2
3,862,311	+				+0.9
3,862,311	+				+0.3
3,862,311	+				-1.1
3,862,311	+				+0.6
3,862,319	-				-2.4
3,862,319	-				-1.0
3,862,319	-				-0.3
3,862,319	-				+1.4
3,862,319	-				-1.1
3,862,319	-				+1.0
3,862,319	-				-0.6
3,862,319	-				-1.6
3,862,337	-				-0.5
3,862,348	+				-0.9
3,862,351	-				+0.1
3,862,354	-				-0.2
3,862,356	-				-0.5
3,862,368	+				+0.7
3,862,387	-				-0.8
3,862,411	+				+0.1
3,862,418	+				-1.3
3,862,425	+				+0.1
3,862,442	+		GFF3822	0.10	-0.6
3,862,480	+		GFF3822	0.13	-0.5
3,862,488	-		GFF3822	0.13	-0.9
3,862,514	+		GFF3822	0.15	-0.0
3,862,515	-		GFF3822	0.15	-0.9
3,862,530	-		GFF3822	0.16	-1.2
3,862,535	-		GFF3822	0.16	+0.3
3,862,547	+		GFF3822	0.17	-0.3
3,862,555	+		GFF3822	0.17	-1.0
3,862,565	+		GFF3822	0.18	-0.3
3,862,565	+		GFF3822	0.18	+0.7
3,862,573	-		GFF3822	0.19	-0.8
3,862,574	-		GFF3822	0.19	-1.1
3,862,578	-		GFF3822	0.19	+0.9
3,862,662	-		GFF3822	0.24	+0.4
3,862,667	+		GFF3822	0.24	+1.0
3,862,682	+		GFF3822	0.25	-1.6
3,862,683	-		GFF3822	0.25	-1.0
3,862,701	-		GFF3822	0.27	-1.6
3,862,713	-		GFF3822	0.27	-0.9
3,862,720	+		GFF3822	0.28	-1.9
3,862,727	+		GFF3822	0.28	-1.3
3,862,727	+		GFF3822	0.28	-1.0
3,862,727	+		GFF3822	0.28	-1.2
3,862,727	+		GFF3822	0.28	+0.8
3,862,727	+		GFF3822	0.28	+0.7
3,862,727	+		GFF3822	0.28	-1.3
3,862,735	+		GFF3822	0.29	-0.3
3,862,735	-		GFF3822	0.29	-0.9
3,862,753	+		GFF3822	0.30	-0.5
3,862,753	+		GFF3822	0.30	-0.2
3,862,761	-		GFF3822	0.30	-0.7
3,862,767	+		GFF3822	0.31	+0.7
3,862,767	+		GFF3822	0.31	-0.8
3,862,789	+		GFF3822	0.32	-1.1
3,862,848	+		GFF3822	0.36	-1.3
3,862,848	+		GFF3822	0.36	+0.8
3,862,849	+		GFF3822	0.36	-0.2
3,862,856	-		GFF3822	0.36	-0.2
3,862,866	+		GFF3822	0.37	+0.6
3,862,880	+		GFF3822	0.38	-0.5
3,862,884	-		GFF3822	0.38	-1.5
3,862,885	+		GFF3822	0.38	-1.9
3,862,885	+		GFF3822	0.38	-0.9
3,862,885	+		GFF3822	0.38	+1.0
3,862,885	+		GFF3822	0.38	-0.9
3,862,885	+		GFF3822	0.38	-0.8
3,862,885	+		GFF3822	0.38	-0.5
3,862,893	-		GFF3822	0.39	-0.5
3,862,893	-		GFF3822	0.39	-0.5
3,862,893	-		GFF3822	0.39	-1.8
3,862,893	-		GFF3822	0.39	-0.7
3,862,923	+		GFF3822	0.40	-0.1
3,862,931	-		GFF3822	0.41	-0.8
3,862,959	-		GFF3822	0.43	+0.5
3,862,976	+		GFF3822	0.44	-0.7
3,862,991	+		GFF3822	0.45	-0.6
3,863,005	+		GFF3822	0.46	-0.2
3,863,005	+		GFF3822	0.46	-1.2
3,863,010	+		GFF3822	0.46	-0.0
3,863,012	+		GFF3822	0.46	-0.9
3,863,020	-		GFF3822	0.47	-0.3
3,863,026	+		GFF3822	0.47	+0.1
3,863,028	+		GFF3822	0.47	-0.2
3,863,028	+		GFF3822	0.47	-0.3
3,863,034	-		GFF3822	0.47	-0.7
3,863,068	+		GFF3822	0.50	-0.3
3,863,087	-		GFF3822	0.51	-0.7
3,863,096	+		GFF3822	0.51	-2.5
3,863,096	+		GFF3822	0.51	-0.9
3,863,102	-		GFF3822	0.52	+1.1
3,863,104	-		GFF3822	0.52	-1.7
3,863,104	-		GFF3822	0.52	-0.3
3,863,104	-		GFF3822	0.52	+0.4
3,863,121	-		GFF3822	0.53	+1.0
3,863,126	-		GFF3822	0.53	-0.9