Strain Fitness in Sphingobium sp. HT1-2 around GFF3768

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,803,676	-				-2.1
3,803,805	+				-1.0
3,803,820	+				+0.4
3,803,828	-				+0.1
3,803,830	+				+2.4
3,803,830	+				+0.5
3,803,845	+				-0.6
3,803,872	+		GFF3767	0.12	+0.3
3,803,908	-		GFF3767	0.16	-0.5
3,803,913	-		GFF3767	0.17	-1.5
3,803,918	+		GFF3767	0.18	-0.8
3,803,926	-		GFF3767	0.18	-0.2
3,803,951	-		GFF3767	0.21	-0.9
3,803,952	+		GFF3767	0.21	+1.1
3,803,953	-		GFF3767	0.21	+0.4
3,803,964	-		GFF3767	0.23	+1.0
3,803,977	+		GFF3767	0.24	-0.9
3,803,977	+		GFF3767	0.24	+0.5
3,803,977	+		GFF3767	0.24	+0.6
3,803,977	+		GFF3767	0.24	-0.5
3,803,977	+		GFF3767	0.24	-0.0
3,803,977	+		GFF3767	0.24	+1.0
3,803,979	+		GFF3767	0.24	-0.7
3,803,985	-		GFF3767	0.25	+0.1
3,803,985	-		GFF3767	0.25	+0.9
3,803,985	-		GFF3767	0.25	+1.5
3,803,985	-		GFF3767	0.25	-0.2
3,803,985	-		GFF3767	0.25	+1.0
3,803,985	-		GFF3767	0.25	-0.4
3,803,985	-		GFF3767	0.25	+0.4
3,803,985	-		GFF3767	0.25	+0.0
3,803,985	-		GFF3767	0.25	+2.6
3,803,985	-		GFF3767	0.25	-0.6
3,803,985	-		GFF3767	0.25	+0.0
3,803,985	-		GFF3767	0.25	+1.8
3,803,987	-		GFF3767	0.25	+0.1
3,804,033	-		GFF3767	0.30	+0.3
3,804,086	+		GFF3767	0.36	+0.9
3,804,086	+		GFF3767	0.36	+0.3
3,804,094	-		GFF3767	0.37	+0.6
3,804,094	-		GFF3767	0.37	-0.4
3,804,094	-		GFF3767	0.37	+0.8
3,804,094	-		GFF3767	0.37	+0.6
3,804,094	-		GFF3767	0.37	-0.5
3,804,094	-		GFF3767	0.37	-2.2
3,804,094	-		GFF3767	0.37	+0.8
3,804,094	-		GFF3767	0.37	+1.8
3,804,094	-		GFF3767	0.37	+0.7
3,804,104	-		GFF3767	0.38	+2.4
3,804,104	-		GFF3767	0.38	+0.5
3,804,114	+		GFF3767	0.40	-1.0
3,804,120	+		GFF3767	0.40	+0.8
3,804,238	+		GFF3767	0.53	-0.5
3,804,265	+		GFF3767	0.56	-0.2
3,804,351	-		GFF3767	0.66	+0.0
3,804,442	+		GFF3767	0.76	-1.0
3,804,443	+		GFF3767	0.76	-1.6
3,804,492	+		GFF3767	0.82	+1.6
3,804,525	-		GFF3767	0.86	-1.4
3,804,563	+		GFF3767	0.90	+0.7
3,804,582	-				-1.1
3,804,610	+				+2.5
3,804,620	+				-1.7
3,804,646	+				-1.4
3,804,651	+				+1.0
3,804,687	+				-0.2
3,804,695	-				+0.5
3,804,698	-				+1.7
3,804,736	+				+0.0
3,804,751	+				-0.5
3,804,757	+				+0.1
3,804,779	+				-0.5
3,804,787	+				-0.5
3,804,787	-				-0.1
3,804,787	-				-0.7
3,804,787	-				-0.8
3,804,812	-				-0.3
3,804,812	-				-0.1
3,804,829	-				-0.9
3,804,834	+				+0.3
3,804,842	-		GFF3768	0.10	+0.6
3,804,852	+		GFF3768	0.11	+0.4
3,804,859	+		GFF3768	0.11	+0.8
3,804,859	+		GFF3768	0.11	+2.4
3,804,860	-		GFF3768	0.11	-0.1
3,804,861	-		GFF3768	0.11	-1.1
3,804,865	-		GFF3768	0.11	+1.3
3,804,867	-		GFF3768	0.11	-0.4
3,804,901	+		GFF3768	0.13	+0.2
3,804,915	+		GFF3768	0.14	-0.7
3,804,916	+		GFF3768	0.14	+0.1
3,804,922	+		GFF3768	0.14	+0.4
3,804,922	+		GFF3768	0.14	-0.3
3,804,924	-		GFF3768	0.15	-0.4
3,804,937	+		GFF3768	0.15	+0.9
3,804,940	-		GFF3768	0.15	+0.4
3,804,940	-		GFF3768	0.15	-0.4
3,804,942	+		GFF3768	0.16	-1.0
3,804,954	+		GFF3768	0.16	-0.0
3,804,974	+		GFF3768	0.17	+1.6
3,804,979	+		GFF3768	0.18	-0.2
3,804,979	+		GFF3768	0.18	-1.0
3,804,982	-		GFF3768	0.18	+0.3
3,805,073	-		GFF3768	0.23	-0.2
3,805,091	+		GFF3768	0.24	-1.8
3,805,109	-		GFF3768	0.25	+1.1
3,805,118	+		GFF3768	0.25	+1.3
3,805,126	-		GFF3768	0.25	-0.0
3,805,133	+		GFF3768	0.26	+0.2
3,805,133	+		GFF3768	0.26	+0.8
3,805,133	+		GFF3768	0.26	+0.7
3,805,135	+		GFF3768	0.26	+2.0
3,805,140	+		GFF3768	0.26	-0.3
3,805,140	+		GFF3768	0.26	-0.6
3,805,141	-		GFF3768	0.26	-0.9
3,805,141	-		GFF3768	0.26	-0.6
3,805,143	-		GFF3768	0.26	+0.3
3,805,143	-		GFF3768	0.26	+0.4
3,805,143	-		GFF3768	0.26	-1.0
3,805,143	-		GFF3768	0.26	+0.1
3,805,179	-		GFF3768	0.28	+0.0
3,805,190	+		GFF3768	0.29	-1.3
3,805,196	+		GFF3768	0.29	-0.6
3,805,198	-		GFF3768	0.29	-1.2
3,805,198	-		GFF3768	0.29	+0.1
3,805,206	+		GFF3768	0.30	-0.7
3,805,211	+		GFF3768	0.30	+1.0
3,805,246	+		GFF3768	0.32	-0.3
3,805,246	+		GFF3768	0.32	-0.6
3,805,246	+		GFF3768	0.32	+0.8
3,805,246	+		GFF3768	0.32	+0.8
3,805,246	+		GFF3768	0.32	+0.2
3,805,246	+		GFF3768	0.32	-0.5
3,805,246	+		GFF3768	0.32	+1.5
3,805,246	+		GFF3768	0.32	-2.0
3,805,246	+		GFF3768	0.32	-0.1
3,805,251	+		GFF3768	0.32	+1.1
3,805,254	-		GFF3768	0.32	-0.9
3,805,254	-		GFF3768	0.32	+1.7
3,805,254	-		GFF3768	0.32	-1.3
3,805,254	-		GFF3768	0.32	-0.4
3,805,254	-		GFF3768	0.32	+1.1
3,805,254	-		GFF3768	0.32	-0.2
3,805,254	-		GFF3768	0.32	+0.4
3,805,254	-		GFF3768	0.32	+2.0
3,805,254	-		GFF3768	0.32	-0.5
3,805,259	-		GFF3768	0.33	+0.4
3,805,259	-		GFF3768	0.33	+0.6
3,805,272	-		GFF3768	0.33	+0.4
3,805,272	-		GFF3768	0.33	+1.5
3,805,285	+		GFF3768	0.34	-1.4
3,805,285	+		GFF3768	0.34	+0.9
3,805,290	+		GFF3768	0.34	-0.1
3,805,290	+		GFF3768	0.34	+0.6
3,805,292	+		GFF3768	0.34	+1.7
3,805,292	+		GFF3768	0.34	-0.4
3,805,298	-		GFF3768	0.35	-1.0
3,805,298	-		GFF3768	0.35	+0.3
3,805,300	+		GFF3768	0.35	+1.1
3,805,300	-		GFF3768	0.35	+0.6
3,805,300	-		GFF3768	0.35	-0.9
3,805,300	-		GFF3768	0.35	-1.4
3,805,325	-		GFF3768	0.36	+0.4
3,805,336	+		GFF3768	0.37	-0.3
3,805,336	+		GFF3768	0.37	+0.1
3,805,344	-		GFF3768	0.37	-1.6
3,805,344	-		GFF3768	0.37	+0.4
3,805,344	-		GFF3768	0.37	+0.8
3,805,373	+		GFF3768	0.39	-0.6
3,805,429	+		GFF3768	0.42	+2.1
3,805,557	-		GFF3768	0.49	-1.3
3,805,573	+		GFF3768	0.50	-0.0
3,805,578	+		GFF3768	0.50	+0.0
3,805,583	+		GFF3768	0.50	+0.7
3,805,583	+		GFF3768	0.50	-0.0
3,805,586	-		GFF3768	0.50	-0.4
3,805,586	-		GFF3768	0.50	+0.3
3,805,586	-		GFF3768	0.50	-0.6
3,805,586	-		GFF3768	0.50	+0.2
3,805,586	-		GFF3768	0.50	+0.5
3,805,586	-		GFF3768	0.50	-0.4
3,805,591	-		GFF3768	0.51	+1.5
3,805,653	-		GFF3768	0.54	-0.1
3,805,663	-		GFF3768	0.54	+0.0
3,805,687	-		GFF3768	0.56	+0.9
3,805,687	-		GFF3768	0.56	-0.5
3,805,705	-		GFF3768	0.57	-0.4
3,805,716	+		GFF3768	0.57	+1.3
3,805,716	+		GFF3768	0.57	+0.8
3,805,716	+		GFF3768	0.57	-0.4
3,805,716	+		GFF3768	0.57	+0.6
3,805,724	-		GFF3768	0.58	-0.7
3,805,724	-		GFF3768	0.58	+0.8
3,805,724	-		GFF3768	0.58	+1.4
3,805,739	+		GFF3768	0.59	-0.8
3,805,919	+		GFF3768	0.68	+0.8
3,806,095	+		GFF3768	0.78	-1.2
3,806,103	-		GFF3768	0.78	-0.2
3,806,159	+		GFF3768	0.81	-0.8
3,806,164	+		GFF3768	0.81	+0.0
3,806,174	+		GFF3768	0.82	+0.3
3,806,174	+		GFF3768	0.82	+0.3
3,806,174	-		GFF3768	0.82	+0.1
3,806,182	-		GFF3768	0.82	+0.8
3,806,182	-		GFF3768	0.82	+0.6
3,806,191	+		GFF3768	0.83	+0.4
3,806,230	-		GFF3768	0.85	+2.0
3,806,305	+		GFF3768	0.89	-0.3
3,806,397	+				+1.4
3,806,415	+				+0.6
3,806,450	+				+0.6
3,806,450	+				+0.6
3,806,530	-				-1.3
3,806,535	-				-0.2
3,806,539	+				+1.5
3,806,544	+				-0.1
3,806,552	-				-0.0
3,806,552	-				-0.5
3,806,552	-				+1.6
3,806,552	-				+2.1
3,806,559	-				+0.6
3,806,652	+				+0.5
3,806,770	-				-0.8
3,806,773	+				+1.2
3,806,780	+		GFF3769	0.10	+0.4
3,806,780	-		GFF3769	0.10	+0.0
3,806,802	-		GFF3769	0.12	+0.6
3,806,805	+		GFF3769	0.12	+0.7
3,806,813	-		GFF3769	0.12	-1.0
3,806,906	-		GFF3769	0.19	-0.7
3,806,913	+		GFF3769	0.20	+0.5
3,806,913	+		GFF3769	0.20	-0.3
3,806,988	-		GFF3769	0.26	+2.6
3,807,002	-		GFF3769	0.27	+0.7
3,807,016	+		GFF3769	0.28	+0.2
3,807,024	-		GFF3769	0.28	+2.9
3,807,033	+		GFF3769	0.29	-1.4
3,807,037	-		GFF3769	0.29	+1.5
3,807,038	-		GFF3769	0.29	-0.5
3,807,039	-		GFF3769	0.29	+0.4
3,807,081	+		GFF3769	0.33	+0.6
3,807,081	+		GFF3769	0.33	-0.7
3,807,113	+		GFF3769	0.35	-0.3
3,807,128	+		GFF3769	0.36	+1.2
3,807,188	+		GFF3769	0.41	-1.0
3,807,188	+		GFF3769	0.41	+0.5
3,807,196	-		GFF3769	0.41	+0.8
3,807,207	-		GFF3769	0.42	+0.9
3,807,243	+		GFF3769	0.45	-1.2
3,807,256	-		GFF3769	0.46	+0.7
3,807,256	-		GFF3769	0.46	+1.6
3,807,267	+		GFF3769	0.47	-1.4
3,807,267	-		GFF3769	0.47	+1.7
3,807,289	+		GFF3769	0.48	-0.8
3,807,290	+		GFF3769	0.48	+0.5
3,807,389	-		GFF3769	0.56	-1.5
3,807,395	-		GFF3769	0.56	+0.6
3,807,408	+		GFF3769	0.57	+0.5
3,807,420	+		GFF3769	0.58	-0.4
3,807,438	+		GFF3769	0.60	-0.2
3,807,439	-		GFF3769	0.60	+0.4
3,807,443	+		GFF3769	0.60	+2.1
3,807,448	+		GFF3769	0.60	+1.1
3,807,448	+		GFF3769	0.60	-0.5
3,807,451	-		GFF3769	0.60	+0.1
3,807,453	+		GFF3769	0.61	+0.1
3,807,453	+		GFF3769	0.61	+1.3
3,807,456	-		GFF3769	0.61	+0.6
3,807,456	-		GFF3769	0.61	+1.7
3,807,461	-		GFF3769	0.61	+0.0
3,807,461	-		GFF3769	0.61	+0.9
3,807,472	-		GFF3769	0.62	+1.3
3,807,482	+		GFF3769	0.63	+0.6
3,807,489	+		GFF3769	0.63	+1.0