Strain Fitness in Sphingobium sp. HT1-2 around GFF3651

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,693,683	-		GFF3650	0.43	-0.9
3,693,683	-		GFF3650	0.43	+0.7
3,693,686	-		GFF3650	0.44	+0.3
3,693,710	-		GFF3650	0.46	+0.4
3,693,717	-		GFF3650	0.46	+0.6
3,693,770	+		GFF3650	0.51	+0.1
3,693,797	+		GFF3650	0.54	+0.3
3,693,797	+		GFF3650	0.54	+1.0
3,693,797	+		GFF3650	0.54	+0.1
3,693,827	+		GFF3650	0.56	+0.7
3,693,929	+		GFF3650	0.65	-1.2
3,693,945	+		GFF3650	0.67	-0.8
3,693,945	+		GFF3650	0.67	-0.5
3,693,953	-		GFF3650	0.68	-0.7
3,693,958	-		GFF3650	0.68	-0.7
3,693,958	-		GFF3650	0.68	-0.4
3,693,958	-		GFF3650	0.68	-0.7
3,693,960	+		GFF3650	0.68	-1.5
3,693,968	-		GFF3650	0.69	+0.6
3,693,968	-		GFF3650	0.69	+0.3
3,693,980	+		GFF3650	0.70	-0.6
3,693,985	+		GFF3650	0.70	+0.8
3,693,985	+		GFF3650	0.70	-0.8
3,693,985	+		GFF3650	0.70	+0.8
3,693,985	+		GFF3650	0.70	-0.8
3,693,993	-		GFF3650	0.71	+1.8
3,693,993	-		GFF3650	0.71	-0.5
3,694,036	+		GFF3650	0.75	+0.3
3,694,042	+		GFF3650	0.76	+1.6
3,694,046	+		GFF3650	0.76	-0.3
3,694,056	+		GFF3650	0.77	+1.3
3,694,081	-		GFF3650	0.79	+0.1
3,694,119	+		GFF3650	0.82	-0.2
3,694,127	+		GFF3650	0.83	+0.4
3,694,127	+		GFF3650	0.83	+0.6
3,694,127	+		GFF3650	0.83	+0.6
3,694,127	-		GFF3650	0.83	-0.8
3,694,127	-		GFF3650	0.83	-1.6
3,694,137	+		GFF3650	0.84	-2.1
3,694,140	-		GFF3650	0.84	-0.9
3,694,142	+		GFF3650	0.84	-0.2
3,694,164	+		GFF3650	0.86	+0.0
3,694,174	+		GFF3650	0.87	-1.0
3,694,205	+				-1.5
3,694,205	+				+0.7
3,694,205	+				+0.8
3,694,213	-				+0.8
3,694,271	+				+1.9
3,694,279	-				+0.2
3,694,279	-				-0.5
3,694,281	+				+2.0
3,694,281	+				-0.5
3,694,281	+				+0.2
3,694,281	+				+0.4
3,694,281	+				+0.5
3,694,281	+				-0.3
3,694,281	+				+0.3
3,694,281	+				-1.4
3,694,281	+				-0.0
3,694,281	+				-2.0
3,694,289	-				+0.8
3,694,289	-				+0.7
3,694,289	-				+1.0
3,694,289	-				+0.2
3,694,289	-				-0.1
3,694,289	-				+1.1
3,694,289	-				-0.6
3,694,289	-				+0.2
3,694,289	-				+0.3
3,694,289	-				-1.2
3,694,289	-				+0.6
3,694,289	-				+0.6
3,694,289	-				+0.2
3,694,289	-				-0.4
3,694,289	-				+0.4
3,694,289	-				+0.6
3,694,289	-				-0.3
3,694,289	-				+0.2
3,694,289	-				+0.2
3,694,289	-				+0.7
3,694,289	-				-2.4
3,694,289	-				-0.1
3,694,289	-				+0.2
3,694,487	+				-0.6
3,694,514	+				-0.7
3,694,519	+				+1.1
3,694,521	+				+2.0
3,694,622	+				+1.3
3,694,655	+				-0.5
3,694,657	+				+0.5
3,694,657	+				+0.9
3,694,657	+				+0.5
3,694,657	+				+2.6
3,694,657	+				+1.9
3,694,663	-				-0.4
3,694,664	+				-0.7
3,694,665	-				-1.2
3,694,673	-				-0.1
3,694,677	-				-0.6
3,694,700	-				+1.3
3,694,705	-				-0.5
3,694,775	+		GFF3651	0.12	-1.0
3,694,800	+		GFF3651	0.15	+0.2
3,694,823	+		GFF3651	0.18	-0.5
3,694,823	+		GFF3651	0.18	+0.5
3,694,848	+		GFF3651	0.21	-1.5
3,694,854	-		GFF3651	0.22	-1.4
3,694,876	+		GFF3651	0.24	-0.7
3,694,921	+		GFF3651	0.30	+0.9
3,694,922	-		GFF3651	0.30	-0.1
3,694,936	-		GFF3651	0.31	+1.0
3,694,946	-		GFF3651	0.33	-0.3
3,694,946	-		GFF3651	0.33	-1.0
3,694,963	+		GFF3651	0.35	-0.0
3,694,963	+		GFF3651	0.35	-0.4
3,694,963	+		GFF3651	0.35	-1.7
3,694,963	+		GFF3651	0.35	-0.8
3,694,966	-		GFF3651	0.35	+0.0
3,694,971	-		GFF3651	0.36	-0.2
3,695,015	+		GFF3651	0.41	-1.0
3,695,053	-		GFF3651	0.45	-0.3
3,695,069	+		GFF3651	0.47	+0.5
3,695,098	+		GFF3651	0.51	+0.1
3,695,116	-		GFF3651	0.53	+0.1
3,695,141	+		GFF3651	0.56	+0.7
3,695,150	-		GFF3651	0.57	-0.4
3,695,161	+		GFF3651	0.58	-0.3
3,695,198	+		GFF3651	0.63	-1.2
3,695,206	-		GFF3651	0.64	+0.4
3,695,206	-		GFF3651	0.64	+1.7
3,695,208	+		GFF3651	0.64	+0.1
3,695,218	+		GFF3651	0.65	+0.8
3,695,268	-		GFF3651	0.71	-1.4
3,695,271	+		GFF3651	0.72	+0.5
3,695,278	+		GFF3651	0.73	-0.3
3,695,285	+		GFF3651	0.73	+2.5
3,695,293	-		GFF3651	0.74	-1.2
3,695,319	+		GFF3651	0.77	+0.4
3,695,319	+		GFF3651	0.77	-0.6
3,695,319	+		GFF3651	0.77	+1.4
3,695,319	+		GFF3651	0.77	+1.0
3,695,319	+		GFF3651	0.77	-1.2
3,695,319	+		GFF3651	0.77	+1.1
3,695,322	-		GFF3651	0.78	-0.4
3,695,327	-		GFF3651	0.78	+1.2
3,695,327	-		GFF3651	0.78	-0.2
3,695,327	-		GFF3651	0.78	-0.9
3,695,327	-		GFF3651	0.78	-1.1
3,695,327	-		GFF3651	0.78	-1.0
3,695,327	-		GFF3651	0.78	-1.2
3,695,327	-		GFF3651	0.78	+0.2
3,695,327	-		GFF3651	0.78	+0.2
3,695,327	-		GFF3651	0.78	+2.5
3,695,334	+		GFF3651	0.79	-0.8
3,695,334	+		GFF3651	0.79	+0.9
3,695,336	+		GFF3651	0.80	+0.2
3,695,369	+		GFF3651	0.84	-0.7
3,695,419	-		GFF3651	0.90	+0.0
3,695,499	-				-0.7
3,695,562	+				-0.7
3,695,571	-				+0.6
3,695,611	+				+0.8
3,695,646	+				+0.8
3,695,652	-				+0.7
3,695,653	+				-1.2
3,695,708	+		GFF3652	0.14	+1.0
3,695,709	-		GFF3652	0.14	-0.8
3,695,709	-		GFF3652	0.14	-1.3
3,695,713	+		GFF3652	0.15	+2.1
3,695,723	+		GFF3652	0.16	+0.7
3,695,733	+		GFF3652	0.18	-1.4
3,695,733	+		GFF3652	0.18	-2.0
3,695,733	+		GFF3652	0.18	+0.2
3,695,733	+		GFF3652	0.18	-0.8
3,695,739	-		GFF3652	0.19	-0.2
3,695,739	-		GFF3652	0.19	-1.7
3,695,741	-		GFF3652	0.19	+0.5
3,695,746	+		GFF3652	0.20	+0.6
3,695,811	+		GFF3652	0.29	-0.3
3,695,848	+		GFF3652	0.34	+1.2
3,695,848	+		GFF3652	0.34	-0.2
3,695,851	+		GFF3652	0.35	+1.3
3,695,853	+		GFF3652	0.35	-0.6
3,695,859	-		GFF3652	0.36	-0.7
3,695,880	+		GFF3652	0.39	-0.8
3,695,893	+		GFF3652	0.41	+0.3
3,695,916	+		GFF3652	0.44	+0.3
3,695,916	+		GFF3652	0.44	+1.6
3,695,924	-		GFF3652	0.45	-0.3
3,695,973	+		GFF3652	0.52	-2.2
3,695,981	-		GFF3652	0.53	+0.8
3,696,005	-		GFF3652	0.57	+0.2
3,696,009	+		GFF3652	0.57	-1.2
3,696,030	-		GFF3652	0.60	+1.5
3,696,047	-		GFF3652	0.63	+0.9
3,696,050	-		GFF3652	0.63	-0.6
3,696,078	-		GFF3652	0.67	+0.3
3,696,078	-		GFF3652	0.67	+0.4
3,696,099	+		GFF3652	0.70	+1.0
3,696,099	+		GFF3652	0.70	+1.0
3,696,107	-		GFF3652	0.71	-1.0
3,696,107	-		GFF3652	0.71	+0.3
3,696,116	-		GFF3652	0.73	-1.3
3,696,156	-		GFF3652	0.78	-1.7
3,696,156	-		GFF3652	0.78	-0.6
3,696,168	+		GFF3652	0.80	-1.3
3,696,168	+		GFF3652	0.80	+0.0
3,696,173	+		GFF3652	0.81	+1.2
3,696,176	-		GFF3652	0.81	-0.9
3,696,181	+		GFF3652	0.82	-0.1
3,696,185	+		GFF3652	0.83	-0.0
3,696,189	-		GFF3652	0.83	-0.6
3,696,209	-		GFF3652	0.86	+0.6
3,696,209	-		GFF3652	0.86	-0.9
3,696,238	+				+1.2
3,696,238	+				-0.6
3,696,238	+				+0.1
3,696,238	+				+0.9
3,696,246	-				-0.8
3,696,246	-				+0.3
3,696,255	+				-0.2
3,696,264	+				+0.5
3,696,285	-				-2.3
3,696,309	-				-1.6
3,696,314	-				+1.3
3,696,326	+				+1.4
3,696,326	+				+0.9
3,696,326	+				+0.3
3,696,334	-				+0.1
3,696,334	-				-0.2
3,696,334	-				+1.3
3,696,334	-				+1.3
3,696,344	-				+1.0
3,696,353	+				+1.3
3,696,358	-				-0.5
3,696,363	+				+0.3
3,696,363	+				+0.6
3,696,383	-				+0.9
3,696,393	-				+1.1
3,696,407	+				+0.1
3,696,423	+				+0.6
3,696,442	+		GFF3653	0.11	-1.0
3,696,443	-		GFF3653	0.11	+0.3
3,696,450	-		GFF3653	0.11	-0.4
3,696,450	-		GFF3653	0.11	-1.0
3,696,451	-		GFF3653	0.11	-1.7
3,696,461	+		GFF3653	0.12	+2.1
3,696,469	-		GFF3653	0.13	+0.8
3,696,484	-		GFF3653	0.14	+0.6
3,696,494	+		GFF3653	0.14	+1.0
3,696,494	+		GFF3653	0.14	+0.9