Strain Fitness in Sphingobium sp. HT1-2 around GFF3631

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,678,757	+		GFF3629	0.70	+1.1
3,678,784	+		GFF3629	0.72	+0.1
3,678,786	-		GFF3629	0.72	+1.2
3,678,792	+		GFF3629	0.72	+1.0
3,678,792	+		GFF3629	0.72	-0.8
3,678,792	-		GFF3629	0.72	-0.3
3,678,799	+		GFF3629	0.73	-0.8
3,678,799	+		GFF3629	0.73	+0.9
3,678,800	-		GFF3629	0.73	-0.3
3,678,817	-		GFF3629	0.74	-0.5
3,678,827	+		GFF3629	0.75	-0.8
3,678,832	+		GFF3629	0.76	+0.2
3,678,840	-		GFF3629	0.76	-0.8
3,678,843	+		GFF3629	0.76	-1.0
3,678,860	+		GFF3629	0.78	+0.5
3,678,868	-		GFF3629	0.78	-1.7
3,678,869	+		GFF3629	0.79	-1.4
3,678,869	+		GFF3629	0.79	-0.4
3,678,872	-		GFF3629	0.79	-0.5
3,678,890	+		GFF3629	0.80	-0.3
3,678,903	+		GFF3629	0.81	-0.9
3,678,989	+		GFF3629	0.88	+1.1
3,679,012	+		GFF3629	0.90	-0.1
3,679,012	+		GFF3629	0.90	+0.1
3,679,012	+		GFF3629	0.90	+0.1
3,679,017	+				-0.8
3,679,018	-				-1.0
3,679,020	-				-0.6
3,679,025	-				-2.2
3,679,025	-				-0.2
3,679,025	-				-0.2
3,679,030	-				-1.0
3,679,035	-				-1.7
3,679,037	-				+0.7
3,679,055	+				-0.5
3,679,087	-				-1.9
3,679,094	-				-0.0
3,679,104	+				-0.9
3,679,109	+				-1.8
3,679,109	+				+1.6
3,679,109	+				-1.5
3,679,109	+				-1.5
3,679,109	+				-1.4
3,679,112	-				+1.1
3,679,117	-				-0.5
3,679,117	-				+0.1
3,679,117	-				+0.2
3,679,127	-				-0.6
3,679,127	-				-0.3
3,679,127	-				-1.2
3,679,134	+				+0.3
3,679,134	+				-1.3
3,679,134	+				+0.3
3,679,135	+				-0.4
3,679,140	-				-0.9
3,679,154	+				-1.6
3,679,162	+				-0.1
3,679,162	-				-0.4
3,679,162	-				+1.0
3,679,162	-				+0.1
3,679,163	+				-0.6
3,679,163	-				-1.0
3,679,194	-				-2.2
3,679,207	-		GFF3630	0.12	-0.2
3,679,207	-		GFF3630	0.12	-1.1
3,679,207	-		GFF3630	0.12	-1.1
3,679,207	-		GFF3630	0.12	+0.4
3,679,207	-		GFF3630	0.12	-1.3
3,679,227	-		GFF3630	0.15	+1.5
3,679,241	-		GFF3630	0.17	-0.9
3,679,274	+		GFF3630	0.22	+2.5
3,679,314	-		GFF3630	0.29	+0.2
3,679,343	+		GFF3630	0.34	-0.7
3,679,343	+		GFF3630	0.34	-0.2
3,679,346	-		GFF3630	0.34	+0.2
3,679,348	+		GFF3630	0.34	+0.4
3,679,351	-		GFF3630	0.35	+0.6
3,679,358	+		GFF3630	0.36	-0.2
3,679,365	+		GFF3630	0.37	+0.8
3,679,373	-		GFF3630	0.39	-0.8
3,679,382	-		GFF3630	0.40	+0.6
3,679,389	+		GFF3630	0.41	-0.7
3,679,399	+		GFF3630	0.43	+0.2
3,679,401	+		GFF3630	0.43	-0.4
3,679,445	-		GFF3630	0.50	-0.3
3,679,445	-		GFF3630	0.50	+0.4
3,679,456	+		GFF3630	0.52	-0.9
3,679,482	-		GFF3630	0.56	-1.6
3,679,483	+		GFF3630	0.56	-1.5
3,679,483	+		GFF3630	0.56	+0.6
3,679,491	-		GFF3630	0.58	-0.5
3,679,508	-		GFF3630	0.60	-1.0
3,679,509	+		GFF3630	0.61	-1.5
3,679,509	+		GFF3630	0.61	+0.2
3,679,509	+		GFF3630	0.61	-0.7
3,679,511	+		GFF3630	0.61	-0.9
3,679,517	-		GFF3630	0.62	+1.3
3,679,517	-		GFF3630	0.62	-0.3
3,679,517	-		GFF3630	0.62	+0.1
3,679,529	+		GFF3630	0.64	-1.7
3,679,538	+		GFF3630	0.65	-2.1
3,679,544	+		GFF3630	0.66	+1.4
3,679,563	+		GFF3630	0.69	+0.9
3,679,573	+		GFF3630	0.71	-0.6
3,679,585	-		GFF3630	0.73	-1.9
3,679,624	+		GFF3630	0.79	+0.7
3,679,624	-		GFF3630	0.79	+0.2
3,679,632	-		GFF3630	0.81	-0.6
3,679,632	-		GFF3630	0.81	-0.4
3,679,643	-		GFF3630	0.82	-0.9
3,679,675	+		GFF3630	0.88	+0.3
3,679,679	+		GFF3630	0.88	-0.6
3,679,679	+		GFF3630	0.88	-0.9
3,679,679	+		GFF3630	0.88	-0.9
3,679,679	+		GFF3630	0.88	+0.4
3,679,683	-		GFF3630	0.89	+1.0
3,679,687	-		GFF3630	0.90	-0.2
3,679,687	-		GFF3630	0.90	-0.2
3,679,712	+				-0.0
3,679,712	+				-0.1
3,679,720	-				+0.2
3,679,757	+				-0.6
3,679,757	+				-0.4
3,679,785	-				-0.7
3,679,789	+				-0.9
3,679,805	-				-1.7
3,679,877	+		GFF3631	0.16	-0.9
3,679,879	-		GFF3631	0.17	-2.7
3,679,884	+		GFF3631	0.17	-2.4
3,679,884	+		GFF3631	0.17	+0.3
3,679,884	+		GFF3631	0.17	-0.8
3,679,892	-		GFF3631	0.18	-1.1
3,679,925	-		GFF3631	0.22	+0.8
3,679,940	-		GFF3631	0.24	-1.5
3,679,950	+		GFF3631	0.26	-0.7
3,679,958	+		GFF3631	0.27	-1.4
3,679,958	-		GFF3631	0.27	-0.2
3,679,960	-		GFF3631	0.27	-0.5
3,680,001	+		GFF3631	0.32	+0.3
3,680,009	-		GFF3631	0.33	-0.8
3,680,019	-		GFF3631	0.34	+0.1
3,680,051	-		GFF3631	0.38	-1.8
3,680,086	-		GFF3631	0.43	+1.3
3,680,090	+		GFF3631	0.43	+0.1
3,680,093	-		GFF3631	0.44	+0.2
3,680,095	+		GFF3631	0.44	+0.1
3,680,095	+		GFF3631	0.44	-0.9
3,680,095	+		GFF3631	0.44	-0.8
3,680,095	+		GFF3631	0.44	-1.0
3,680,095	+		GFF3631	0.44	-0.2
3,680,096	-		GFF3631	0.44	-0.6
3,680,103	-		GFF3631	0.45	-1.0
3,680,103	-		GFF3631	0.45	-1.2
3,680,103	-		GFF3631	0.45	+0.2
3,680,103	-		GFF3631	0.45	-1.4
3,680,103	-		GFF3631	0.45	+0.3
3,680,103	-		GFF3631	0.45	-1.2
3,680,120	+		GFF3631	0.47	-1.8
3,680,120	+		GFF3631	0.47	+1.0
3,680,120	+		GFF3631	0.47	-1.3
3,680,120	+		GFF3631	0.47	-0.9
3,680,120	+		GFF3631	0.47	+0.1
3,680,123	-		GFF3631	0.47	+0.3
3,680,128	-		GFF3631	0.48	-0.7
3,680,128	-		GFF3631	0.48	-1.6
3,680,128	-		GFF3631	0.48	+0.4
3,680,128	-		GFF3631	0.48	+1.8
3,680,128	-		GFF3631	0.48	-0.8
3,680,134	-		GFF3631	0.49	-1.2
3,680,138	-		GFF3631	0.49	+0.4
3,680,157	+		GFF3631	0.52	+1.4
3,680,157	+		GFF3631	0.52	-0.9
3,680,171	-		GFF3631	0.54	+0.1
3,680,176	-		GFF3631	0.54	-1.0
3,680,183	+		GFF3631	0.55	-0.3
3,680,191	-		GFF3631	0.56	-1.1
3,680,221	-		GFF3631	0.60	-1.0
3,680,225	-		GFF3631	0.60	-0.4
3,680,258	+		GFF3631	0.65	-0.5
3,680,275	-		GFF3631	0.67	+1.1
3,680,275	-		GFF3631	0.67	-0.9
3,680,295	-		GFF3631	0.69	-0.9
3,680,298	+		GFF3631	0.70	-0.4
3,680,298	+		GFF3631	0.70	-1.0
3,680,298	+		GFF3631	0.70	+0.1
3,680,298	+		GFF3631	0.70	-0.8
3,680,298	+		GFF3631	0.70	-0.9
3,680,298	+		GFF3631	0.70	+0.1
3,680,298	+		GFF3631	0.70	-0.6
3,680,298	+		GFF3631	0.70	-1.1
3,680,300	+		GFF3631	0.70	-0.9
3,680,306	-		GFF3631	0.71	-0.7
3,680,306	-		GFF3631	0.71	-0.9
3,680,308	-		GFF3631	0.71	+0.4
3,680,308	-		GFF3631	0.71	-0.9
3,680,326	-		GFF3631	0.73	-2.3
3,680,330	-		GFF3631	0.74	-0.7
3,680,331	-		GFF3631	0.74	+0.4
3,680,354	-		GFF3631	0.77	+0.3
3,680,371	-		GFF3631	0.79	+1.3
3,680,372	-		GFF3631	0.79	-0.5
3,680,372	-		GFF3631	0.79	-1.2
3,680,374	+		GFF3631	0.79	+0.5
3,680,374	+		GFF3631	0.79	-1.2
3,680,374	+		GFF3631	0.79	-0.9
3,680,420	-		GFF3631	0.85	+0.2
3,680,453	+		GFF3631	0.89	+0.3
3,680,491	-				+1.4
3,680,496	+				+1.1
3,680,496	-				+0.4
3,680,506	+				-0.8
3,680,547	-				-2.1
3,680,549	+				-0.8
3,680,549	+				-0.4
3,680,552	-				-0.9
3,680,552	-				-1.4
3,680,554	+				+1.4
3,680,557	-				-0.5
3,680,557	-				+0.0
3,680,557	-				-0.5
3,680,573	-				-1.2
3,680,580	+				+0.2
3,680,580	+				-2.2
3,680,588	-				-0.7
3,680,594	+				-0.9
3,680,597	-				-0.3
3,680,598	-				+0.4
3,680,598	-				-0.3
3,680,602	-				-1.3
3,680,602	-				-2.0
3,680,611	-				-1.2
3,680,616	-				-0.9
3,680,626	+		GFF3632	0.10	+2.6
3,680,633	-		GFF3632	0.11	-2.0
3,680,634	-		GFF3632	0.11	-0.6
3,680,634	-		GFF3632	0.11	-0.1
3,680,639	-		GFF3632	0.12	+2.1
3,680,690	-		GFF3632	0.18	+0.6
3,680,693	+		GFF3632	0.19	-2.5
3,680,710	+		GFF3632	0.21	-0.2
3,680,715	+		GFF3632	0.21	-2.2
3,680,718	-		GFF3632	0.22	-0.8
3,680,718	-		GFF3632	0.22	-0.2
3,680,718	-		GFF3632	0.22	-2.2
3,680,720	+		GFF3632	0.22	-0.9
3,680,723	-		GFF3632	0.22	-1.1
3,680,725	+		GFF3632	0.22	-0.4
3,680,746	+		GFF3632	0.25	-2.1
3,680,751	+		GFF3632	0.26	-2.4
3,680,754	-		GFF3632	0.26	-0.5
3,680,758	+		GFF3632	0.26	-1.1
3,680,758	+		GFF3632	0.26	-0.4
3,680,759	-		GFF3632	0.27	-2.7
3,680,759	-		GFF3632	0.27	-1.0
3,680,764	-		GFF3632	0.27	+0.3
3,680,766	-		GFF3632	0.27	+0.6
3,680,766	-		GFF3632	0.27	-1.6
3,680,766	-		GFF3632	0.27	+0.1
3,680,809	+		GFF3632	0.33	-0.8
3,680,809	+		GFF3632	0.33	+0.9
3,680,809	+		GFF3632	0.33	+0.6
3,680,814	+		GFF3632	0.33	+0.9
3,680,814	+		GFF3632	0.33	-0.1
3,680,817	-		GFF3632	0.34	-0.7
3,680,817	-		GFF3632	0.34	+0.6
3,680,817	-		GFF3632	0.34	-1.0
3,680,817	-		GFF3632	0.34	+0.4
3,680,817	-		GFF3632	0.34	+0.8
3,680,817	-		GFF3632	0.34	-1.4
3,680,817	-		GFF3632	0.34	+0.1
3,680,817	-		GFF3632	0.34	-0.5
3,680,822	-		GFF3632	0.34	-1.2
3,680,827	-		GFF3632	0.35	-0.2
3,680,827	-		GFF3632	0.35	+2.1
3,680,841	+		GFF3632	0.37	-0.6
3,680,850	-		GFF3632	0.38	-0.4
3,680,859	-		GFF3632	0.39	-0.8
3,680,867	+		GFF3632	0.40	+0.0
3,680,886	+		GFF3632	0.42	-0.9
3,680,894	+		GFF3632	0.43	+0.7
3,680,894	+		GFF3632	0.43	+0.4
3,680,894	+		GFF3632	0.43	-0.9
3,680,894	+		GFF3632	0.43	-1.1
3,680,894	+		GFF3632	0.43	+0.1
3,680,894	+		GFF3632	0.43	+0.1
3,680,894	+		GFF3632	0.43	-1.8
3,680,894	+		GFF3632	0.43	-0.2
3,680,894	+		GFF3632	0.43	-1.0
3,680,894	+		GFF3632	0.43	+0.6
3,680,894	+		GFF3632	0.43	-2.1
3,680,894	+		GFF3632	0.43	-0.9
3,680,898	+		GFF3632	0.44	-1.1
3,680,902	-		GFF3632	0.44	+0.7
3,680,902	-		GFF3632	0.44	-1.2
3,680,902	-		GFF3632	0.44	-1.5
3,680,902	-		GFF3632	0.44	+0.0
3,680,902	-		GFF3632	0.44	-1.1
3,680,902	-		GFF3632	0.44	+0.5
3,680,902	-		GFF3632	0.44	-0.6
3,680,902	-		GFF3632	0.44	-0.8
3,680,902	-		GFF3632	0.44	+0.4
3,680,931	-		GFF3632	0.48	-1.6
3,680,938	+		GFF3632	0.48	-0.4
3,680,946	-		GFF3632	0.49	+0.3
3,680,961	+		GFF3632	0.51	-0.1
3,680,968	+		GFF3632	0.52	-1.2
3,680,981	-		GFF3632	0.54	+0.1
3,681,006	-		GFF3632	0.57	-0.2
3,681,011	-		GFF3632	0.57	+0.1
3,681,021	-		GFF3632	0.59	-1.4
3,681,038	+		GFF3632	0.61	-0.5
3,681,038	+		GFF3632	0.61	-0.8
3,681,038	+		GFF3632	0.61	-0.8
3,681,039	-		GFF3632	0.61	-1.8
3,681,046	-		GFF3632	0.62	-2.3
3,681,046	-		GFF3632	0.62	-0.2
3,681,046	-		GFF3632	0.62	-1.8
3,681,046	-		GFF3632	0.62	-0.6
3,681,054	-		GFF3632	0.63	+0.8
3,681,080	+		GFF3632	0.66	+1.4
3,681,080	+		GFF3632	0.66	+0.8
3,681,080	+		GFF3632	0.66	-1.7
3,681,086	+		GFF3632	0.67	+0.6
3,681,086	+		GFF3632	0.67	+1.2
3,681,086	+		GFF3632	0.67	-0.1
3,681,094	-		GFF3632	0.68	-0.9
3,681,094	-		GFF3632	0.68	+0.4
3,681,094	-		GFF3632	0.68	-0.2
3,681,102	-		GFF3632	0.68	-1.9
3,681,128	-		GFF3632	0.72	-1.4
3,681,137	+		GFF3632	0.73	-1.5
3,681,137	+		GFF3632	0.73	-0.6
3,681,137	+		GFF3632	0.73	-0.7
3,681,137	+		GFF3632	0.73	-0.3
3,681,145	-		GFF3632	0.74	-1.7
3,681,145	-		GFF3632	0.74	+2.4
3,681,145	-		GFF3632	0.74	-0.9
3,681,147	-		GFF3632	0.74	-2.0
3,681,156	+		GFF3632	0.75	-0.3
3,681,156	+		GFF3632	0.75	-0.4
3,681,164	-		GFF3632	0.76	+0.3
3,681,164	-		GFF3632	0.76	+0.8
3,681,164	-		GFF3632	0.76	-0.1
3,681,169	-		GFF3632	0.77	-1.4
3,681,170	+		GFF3632	0.77	-0.6
3,681,183	+		GFF3632	0.78	+0.4
3,681,183	+		GFF3632	0.78	-0.5
3,681,210	-		GFF3632	0.82	-0.4
3,681,218	+		GFF3632	0.83	-1.2
3,681,219	+		GFF3632	0.83	-0.2
3,681,219	+		GFF3632	0.83	-1.8
3,681,245	-		GFF3632	0.86	-0.5
3,681,276	-		GFF3632	0.90	+0.1
3,681,306	-				-1.7
3,681,321	+				-0.1
3,681,321	+				-0.7
3,681,321	+				-1.4
3,681,321	+				-0.8
3,681,329	-				-0.7
3,681,329	-				-0.3
3,681,329	-				+0.6
3,681,329	-				-0.7
3,681,329	-				-0.4
3,681,329	-				-0.8
3,681,331	+				+0.5
3,681,362	-				+1.6
3,681,368	-				+0.2
3,681,437	+				+0.5
3,681,458	-				+0.6
3,681,499	+				-1.7