Strain Fitness in Sphingobium sp. HT1-2 around GFF3500

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,537,151	-				-1.3
3,537,158	+				-0.7
3,537,159	+				+0.3
3,537,160	-				-0.9
3,537,165	-				+0.5
3,537,166	-				-0.6
3,537,176	-				+0.3
3,537,190	+				-1.4
3,537,190	+				-1.2
3,537,190	+				+0.0
3,537,193	-				-1.4
3,537,198	-				-0.6
3,537,237	+				-0.7
3,537,237	+				-2.0
3,537,237	+				-0.2
3,537,237	+				-1.9
3,537,237	+				-2.1
3,537,237	+				-0.6
3,537,245	-				-1.1
3,537,245	-				-1.1
3,537,268	+				-1.5
3,537,286	-				-0.8
3,537,321	+				-0.1
3,537,321	+				-0.5
3,537,322	+				+0.4
3,537,328	+				+0.6
3,537,329	-				-0.2
3,537,329	-				-0.5
3,537,329	-				-0.5
3,537,329	-				-0.8
3,537,357	+				-0.7
3,537,377	+				+0.5
3,537,385	+				-1.8
3,537,385	+				-0.4
3,537,385	-				-0.7
3,537,387	+				-0.7
3,537,393	-				-1.8
3,537,395	-				-1.0
3,537,405	-				-1.0
3,537,438	-				-3.2
3,537,440	+				-0.4
3,537,465	+				-0.1
3,537,465	+				-0.0
3,537,465	+				+0.5
3,537,465	+				-1.1
3,537,465	+				-0.2
3,537,465	+				-1.0
3,537,465	+				-0.2
3,537,465	+				+0.1
3,537,465	+				-1.2
3,537,465	+				-2.9
3,537,465	+				+0.1
3,537,465	+				-1.0
3,537,465	+				-0.9
3,537,471	+				+0.0
3,537,471	+				-1.1
3,537,471	+				+1.3
3,537,471	+				-0.6
3,537,471	+				-0.8
3,537,473	-				-0.2
3,537,473	-				+1.4
3,537,473	-				-0.2
3,537,473	-				-1.3
3,537,473	-				-1.2
3,537,473	-				-0.0
3,537,473	-				+0.0
3,537,473	-				+0.5
3,537,473	-				-0.4
3,537,473	-				+0.6
3,537,473	-				+1.1
3,537,499	-				-1.4
3,537,523	+				-0.4
3,537,531	-				-2.3
3,537,531	-				-1.4
3,537,531	-				+0.3
3,537,533	+				-0.5
3,537,581	+				-1.5
3,537,581	+				+0.3
3,537,586	+				+0.5
3,537,586	+				+0.1
3,537,586	+				-1.2
3,537,594	-				+0.2
3,537,594	-				-1.2
3,537,594	-				-0.6
3,537,612	-				-1.0
3,537,619	+				+1.5
3,537,628	+				-1.3
3,537,628	+				-1.0
3,537,628	+				+0.0
3,537,633	+				+0.5
3,537,636	-				-0.5
3,537,636	-				-0.9
3,537,636	-				-0.1
3,537,636	-				-1.5
3,537,636	-				-1.0
3,537,646	-				+0.4
3,537,646	-				-1.0
3,537,646	-				-0.9
3,537,652	-				-1.2
3,537,681	+				-2.1
3,537,683	+				-0.8
3,537,683	+				-0.0
3,537,683	+				-0.5
3,537,687	+				-1.3
3,537,691	-				+0.2
3,537,691	-				+0.6
3,537,691	-				-0.2
3,537,691	-				+0.3
3,537,691	-				-0.2
3,537,691	-				-1.2
3,537,695	-				+0.8
3,537,719	+				+0.5
3,537,766	+		GFF3499	0.11	+0.6
3,537,803	+		GFF3499	0.21	+0.2
3,537,803	+		GFF3499	0.21	-1.2
3,537,803	+		GFF3499	0.21	+0.0
3,537,808	+		GFF3499	0.22	-2.4
3,537,808	+		GFF3499	0.22	+0.4
3,537,808	+		GFF3499	0.22	-0.2
3,537,816	-		GFF3499	0.24	+0.3
3,537,816	-		GFF3499	0.24	+0.6
3,537,824	-		GFF3499	0.26	+0.2
3,537,834	+		GFF3499	0.29	+0.6
3,537,848	+		GFF3499	0.33	-1.3
3,537,856	-		GFF3499	0.35	-2.3
3,537,877	+		GFF3499	0.40	-1.9
3,537,879	+		GFF3499	0.41	-0.9
3,537,887	-		GFF3499	0.43	-0.8
3,537,887	-		GFF3499	0.43	-0.9
3,537,903	+		GFF3499	0.47	+0.5
3,537,905	+		GFF3499	0.48	-0.6
3,537,905	-		GFF3499	0.48	+1.0
3,537,910	+		GFF3499	0.49	-2.1
3,537,917	+		GFF3499	0.51	-1.3
3,537,920	-		GFF3499	0.52	-0.2
3,537,922	+		GFF3499	0.52	-1.0
3,537,926	-		GFF3499	0.53	-0.7
3,537,930	-		GFF3499	0.54	+0.7
3,537,932	+		GFF3499	0.55	-0.4
3,537,955	+		GFF3499	0.61	-1.8
3,537,963	-		GFF3499	0.63	-1.5
3,537,975	+		GFF3499	0.66	+1.1
3,537,975	+		GFF3499	0.66	-1.7
3,537,975	+		GFF3499	0.66	-1.0
3,537,975	+		GFF3499	0.66	+0.3
3,537,975	-		GFF3499	0.66	+0.5
3,537,983	-		GFF3499	0.68	-0.4
3,537,983	-		GFF3499	0.68	-1.6
3,537,983	-		GFF3499	0.68	-0.2
3,537,985	+		GFF3499	0.69	-1.0
3,537,985	+		GFF3499	0.69	+1.8
3,537,985	+		GFF3499	0.69	-0.5
3,537,990	+		GFF3499	0.70	-0.5
3,537,993	-		GFF3499	0.71	-2.0
3,537,998	-		GFF3499	0.72	-1.0
3,538,007	-		GFF3499	0.75	+1.2
3,538,013	+		GFF3499	0.76	-0.3
3,538,013	+		GFF3499	0.76	+1.6
3,538,013	+		GFF3499	0.76	-0.2
3,538,013	+		GFF3499	0.76	-1.0
3,538,018	+		GFF3499	0.78	-0.5
3,538,021	-		GFF3499	0.78	-1.5
3,538,021	-		GFF3499	0.78	-1.8
3,538,023	+		GFF3499	0.79	-0.2
3,538,028	+		GFF3499	0.80	-0.8
3,538,028	+		GFF3499	0.80	-0.2
3,538,028	+		GFF3499	0.80	+0.8
3,538,031	-		GFF3499	0.81	-3.0
3,538,031	-		GFF3499	0.81	-1.0
3,538,033	+		GFF3499	0.81	-0.8
3,538,033	+		GFF3499	0.81	+0.0
3,538,036	-		GFF3499	0.82	-0.0
3,538,036	-		GFF3499	0.82	-1.4
3,538,036	-		GFF3499	0.82	-1.1
3,538,036	-		GFF3499	0.82	-0.2
3,538,036	-		GFF3499	0.82	-0.2
3,538,041	-		GFF3499	0.84	+0.1
3,538,041	-		GFF3499	0.84	+0.6
3,538,041	-		GFF3499	0.84	+1.0
3,538,043	+		GFF3499	0.84	-0.6
3,538,045	+		GFF3499	0.85	-1.4
3,538,051	+		GFF3499	0.86	-0.6
3,538,062	+		GFF3499	0.89	-0.9
3,538,070	-				-0.6
3,538,072	+				-1.2
3,538,072	+				-0.4
3,538,072	+				-0.8
3,538,080	-				-1.3
3,538,080	-				-0.2
3,538,097	+				-0.7
3,538,103	-				-1.6
3,538,105	-				-0.9
3,538,105	-				-1.9
3,538,144	-				+1.1
3,538,153	+				+0.6
3,538,153	+				-0.9
3,538,174	+				-1.5
3,538,174	+				+0.4
3,538,174	+				-0.6
3,538,174	+				-1.5
3,538,174	+				+0.2
3,538,182	-				+0.2
3,538,182	-				-1.5
3,538,219	+				+0.7
3,538,228	-				+0.2
3,538,230	+				-0.9
3,538,238	-		GFF3500	0.10	-0.2
3,538,246	+		GFF3500	0.11	-0.7
3,538,256	+		GFF3500	0.12	-0.6
3,538,275	+		GFF3500	0.14	-1.5
3,538,275	-		GFF3500	0.14	-1.4
3,538,320	-		GFF3500	0.19	+2.1
3,538,322	+		GFF3500	0.19	-0.4
3,538,344	-		GFF3500	0.21	-0.5
3,538,362	+		GFF3500	0.23	+0.1
3,538,382	-		GFF3500	0.25	-0.6
3,538,390	+		GFF3500	0.26	-1.2
3,538,419	+		GFF3500	0.29	+0.7
3,538,452	-		GFF3500	0.33	-1.3
3,538,457	+		GFF3500	0.33	+1.9
3,538,463	-		GFF3500	0.34	+0.3
3,538,482	+		GFF3500	0.36	-1.4
3,538,492	+		GFF3500	0.37	-0.7
3,538,492	+		GFF3500	0.37	-0.2
3,538,496	+		GFF3500	0.37	-0.3
3,538,504	-		GFF3500	0.38	+1.7
3,538,519	-		GFF3500	0.40	+1.0
3,538,525	+		GFF3500	0.40	+0.2
3,538,533	+		GFF3500	0.41	-1.5
3,538,541	-		GFF3500	0.42	+0.2
3,538,551	+		GFF3500	0.43	+0.0
3,538,562	+		GFF3500	0.44	+1.1
3,538,586	-		GFF3500	0.47	-1.4
3,538,586	-		GFF3500	0.47	-0.2
3,538,586	-		GFF3500	0.47	-0.4
3,538,596	+		GFF3500	0.48	+1.0
3,538,603	+		GFF3500	0.48	+0.0
3,538,608	+		GFF3500	0.49	-0.7
3,538,608	+		GFF3500	0.49	-0.5
3,538,608	+		GFF3500	0.49	-1.5
3,538,615	+		GFF3500	0.50	+0.4
3,538,616	-		GFF3500	0.50	-0.6
3,538,616	-		GFF3500	0.50	-1.2
3,538,681	+		GFF3500	0.56	-1.7
3,538,754	+		GFF3500	0.64	+0.6
3,538,762	-		GFF3500	0.65	-0.9
3,538,762	-		GFF3500	0.65	-1.6
3,538,767	-		GFF3500	0.65	+0.4
3,538,769	-		GFF3500	0.66	+0.3
3,538,781	-		GFF3500	0.67	-1.2
3,538,795	+		GFF3500	0.68	-1.5
3,538,796	+		GFF3500	0.68	-0.1
3,538,796	+		GFF3500	0.68	-0.7
3,538,796	+		GFF3500	0.68	-1.0
3,538,796	+		GFF3500	0.68	-0.8
3,538,796	+		GFF3500	0.68	+0.2
3,538,796	+		GFF3500	0.68	+0.4
3,538,796	+		GFF3500	0.68	+0.2
3,538,804	-		GFF3500	0.69	-1.4
3,538,804	-		GFF3500	0.69	+1.4
3,538,804	-		GFF3500	0.69	-0.6
3,538,804	-		GFF3500	0.69	+0.2
3,538,804	-		GFF3500	0.69	-1.4
3,538,804	-		GFF3500	0.69	-0.2
3,538,804	-		GFF3500	0.69	-0.0
3,538,825	+		GFF3500	0.71	-0.5
3,538,825	+		GFF3500	0.71	-0.6
3,538,825	+		GFF3500	0.71	-0.7
3,538,830	+		GFF3500	0.72	-0.3
3,538,845	+		GFF3500	0.73	-0.6
3,538,860	+		GFF3500	0.75	+0.4
3,538,874	-		GFF3500	0.76	-1.2
3,538,874	-		GFF3500	0.76	-0.6
3,538,881	+		GFF3500	0.77	+1.2
3,538,883	-		GFF3500	0.77	-1.0
3,538,886	+		GFF3500	0.78	+0.2
3,538,886	+		GFF3500	0.78	-1.4
3,538,896	+		GFF3500	0.79	-0.2
3,538,918	+		GFF3500	0.81	-1.4
3,538,928	+		GFF3500	0.82	-0.1
3,538,936	-		GFF3500	0.83	+0.2
3,538,936	-		GFF3500	0.83	-1.4
3,538,936	-		GFF3500	0.83	+0.1
3,538,952	+		GFF3500	0.85	-0.2
3,538,952	+		GFF3500	0.85	-0.7
3,538,953	-		GFF3500	0.85	-1.4
3,538,971	+		GFF3500	0.87	-0.7
3,538,979	-		GFF3500	0.87	-1.2
3,538,982	+		GFF3500	0.88	+0.0
3,538,982	+		GFF3500	0.88	-0.5
3,538,989	+		GFF3500	0.88	+1.0
3,538,997	-		GFF3500	0.89	-0.6
3,539,016	+				-0.6
3,539,026	+				-1.2
3,539,034	-				+1.2
3,539,034	-				-1.3
3,539,034	-				-0.6
3,539,038	+				-0.8
3,539,046	-				+0.1
3,539,052	+				-1.3
3,539,057	+				+0.5
3,539,071	+				-3.0
3,539,095	+				+0.6
3,539,095	+				+0.6
3,539,115	-				-1.3
3,539,124	+				+1.1
3,539,140	-				-0.9
3,539,145	-				-1.4
3,539,147	+				-2.1
3,539,151	+				-1.0
3,539,160	-				-1.6
3,539,163	+				-1.6
3,539,163	+				+1.1
3,539,171	+				-0.6
3,539,179	-				+1.2
3,539,209	+				+0.8
3,539,217	-				+2.1
3,539,217	-				-0.9
3,539,247	+		GFF3501	0.12	+0.8
3,539,247	+		GFF3501	0.12	-0.4
3,539,289	+		GFF3501	0.17	-1.3
3,539,289	+		GFF3501	0.17	-0.8
3,539,289	+		GFF3501	0.17	-1.0
3,539,289	+		GFF3501	0.17	+0.2
3,539,289	+		GFF3501	0.17	-1.4
3,539,289	+		GFF3501	0.17	-2.2
3,539,289	+		GFF3501	0.17	-1.2
3,539,289	+		GFF3501	0.17	-0.1
3,539,297	-		GFF3501	0.18	-0.6
3,539,297	-		GFF3501	0.18	-0.7
3,539,297	-		GFF3501	0.18	-1.1
3,539,300	+		GFF3501	0.18	-0.4
3,539,305	+		GFF3501	0.19	+0.4
3,539,305	+		GFF3501	0.19	-2.2
3,539,308	-		GFF3501	0.19	+0.2
3,539,313	-		GFF3501	0.20	+0.3
3,539,329	-		GFF3501	0.22	-1.1
3,539,367	-		GFF3501	0.26	-0.2
3,539,369	+		GFF3501	0.27	-1.4
3,539,369	+		GFF3501	0.27	-0.8
3,539,369	+		GFF3501	0.27	-0.1
3,539,370	+		GFF3501	0.27	-0.5
3,539,370	+		GFF3501	0.27	-2.7
3,539,375	+		GFF3501	0.27	-1.5
3,539,375	+		GFF3501	0.27	-0.9
3,539,375	+		GFF3501	0.27	+0.4
3,539,377	-		GFF3501	0.28	-0.8
3,539,377	-		GFF3501	0.28	+0.4
3,539,377	-		GFF3501	0.28	-0.5
3,539,377	-		GFF3501	0.28	-2.1
3,539,377	-		GFF3501	0.28	+0.4
3,539,377	-		GFF3501	0.28	-1.3
3,539,378	-		GFF3501	0.28	-1.4
3,539,378	-		GFF3501	0.28	-0.7
3,539,378	-		GFF3501	0.28	-1.2
3,539,378	-		GFF3501	0.28	-1.2
3,539,378	-		GFF3501	0.28	-0.5
3,539,378	-		GFF3501	0.28	-2.6
3,539,378	-		GFF3501	0.28	+0.5
3,539,383	-		GFF3501	0.28	-2.2
3,539,405	+		GFF3501	0.31	+0.3
3,539,405	+		GFF3501	0.31	-0.2
3,539,411	-		GFF3501	0.32	-0.8
3,539,411	-		GFF3501	0.32	-0.6
3,539,413	+		GFF3501	0.32	-1.4
3,539,427	-		GFF3501	0.34	+0.8
3,539,439	-		GFF3501	0.35	+0.0
3,539,440	-		GFF3501	0.35	-0.2
3,539,459	+		GFF3501	0.38	-0.8
3,539,459	+		GFF3501	0.38	+0.8
3,539,460	-		GFF3501	0.38	-2.5
3,539,467	-		GFF3501	0.39	+1.2
3,539,470	-		GFF3501	0.39	-0.6
3,539,477	-		GFF3501	0.40	-0.5
3,539,484	+		GFF3501	0.41	-0.3
3,539,485	+		GFF3501	0.41	-1.9
3,539,485	+		GFF3501	0.41	-1.6
3,539,494	-		GFF3501	0.42	+0.8
3,539,498	+		GFF3501	0.42	-0.0
3,539,498	+		GFF3501	0.42	-0.6
3,539,498	+		GFF3501	0.42	-1.2
3,539,506	-		GFF3501	0.43	+0.5
3,539,506	-		GFF3501	0.43	-0.9
3,539,506	-		GFF3501	0.43	+0.0
3,539,520	+		GFF3501	0.45	-0.7
3,539,527	-		GFF3501	0.46	-0.0
3,539,528	-		GFF3501	0.46	-1.2
3,539,541	+		GFF3501	0.47	-1.6
3,539,543	+		GFF3501	0.48	+1.6
3,539,543	+		GFF3501	0.48	-0.4
3,539,543	+		GFF3501	0.48	-1.0
3,539,543	+		GFF3501	0.48	-0.1
3,539,548	+		GFF3501	0.48	-2.9
3,539,549	-		GFF3501	0.48	+1.0
3,539,549	-		GFF3501	0.48	-0.4
3,539,551	-		GFF3501	0.49	-0.9
3,539,551	-		GFF3501	0.49	-0.3
3,539,551	-		GFF3501	0.49	-1.0
3,539,551	-		GFF3501	0.49	-1.2
3,539,551	-		GFF3501	0.49	-1.2
3,539,551	-		GFF3501	0.49	-0.8
3,539,551	-		GFF3501	0.49	-1.2
3,539,564	-		GFF3501	0.50	+0.6
3,539,568	+		GFF3501	0.51	-1.5
3,539,568	+		GFF3501	0.51	-1.2
3,539,576	-		GFF3501	0.52	-0.4
3,539,576	-		GFF3501	0.52	+2.0
3,539,576	-		GFF3501	0.52	-0.6
3,539,590	-		GFF3501	0.53	-0.0
3,539,626	+		GFF3501	0.58	-1.6
3,539,640	+		GFF3501	0.59	-0.4
3,539,645	+		GFF3501	0.60	-1.9
3,539,662	+		GFF3501	0.62	-0.3
3,539,666	+		GFF3501	0.63	+0.0
3,539,674	+		GFF3501	0.64	+1.2
3,539,674	-		GFF3501	0.64	-0.9
3,539,674	-		GFF3501	0.64	+0.9
3,539,745	+		GFF3501	0.72	-1.3
3,539,745	+		GFF3501	0.72	-0.0
3,539,755	+		GFF3501	0.73	-0.4
3,539,755	+		GFF3501	0.73	-1.4
3,539,755	+		GFF3501	0.73	-0.6
3,539,757	+		GFF3501	0.74	-1.7
3,539,763	-		GFF3501	0.74	-0.4
3,539,763	-		GFF3501	0.74	-1.2
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3,539,837	+		GFF3501	0.83	-1.1
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3,539,837	+		GFF3501	0.83	-1.3
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3,539,837	+		GFF3501	0.83	-1.8
3,539,837	-		GFF3501	0.83	-1.7
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3,539,845	-		GFF3501	0.84	+0.3
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3,539,854	+		GFF3501	0.85	-1.4
3,539,870	+		GFF3501	0.87	+0.6
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3,539,915	-				-0.5
3,539,923	+				-0.4
3,539,923	+				+0.3
3,539,928	+				-0.1
3,539,931	-				-0.9
3,539,954	+				+0.2
3,539,957	-				-0.3
3,539,961	+				-0.6
3,539,962	-				-0.3
3,539,962	-				-0.7
3,539,962	-				+0.4
3,539,982	-				-0.0
3,539,993	-				-0.7
3,540,004	+				-0.2
3,540,004	+				+0.0
3,540,004	+				-1.5
3,540,012	+				+0.3
3,540,012	-				-0.4
3,540,044	+				-1.2
3,540,044	+				-0.2
3,540,049	+				+0.5
3,540,052	-				+1.8
3,540,057	-				-0.0
3,540,062	-				-1.2
3,540,070	-				-0.2
3,540,074	+				-0.9
3,540,074	+				-1.3
3,540,084	-				+0.5
3,540,084	-				-0.6