Strain Fitness in Sphingobium sp. HT1-2 around GFF3397

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,439,825	+		GFF3396	0.51	+2.0
3,439,833	-		GFF3396	0.51	+2.1
3,439,835	+		GFF3396	0.51	+0.7
3,439,839	+		GFF3396	0.52	+0.3
3,439,840	+		GFF3396	0.52	+1.0
3,439,841	+		GFF3396	0.52	-1.0
3,439,841	+		GFF3396	0.52	+0.2
3,439,847	+		GFF3396	0.52	-0.3
3,439,847	-		GFF3396	0.52	-0.1
3,439,851	+		GFF3396	0.52	+1.9
3,439,876	+		GFF3396	0.54	+1.0
3,439,879	-		GFF3396	0.54	-0.1
3,439,882	+		GFF3396	0.54	-1.0
3,439,883	+		GFF3396	0.54	+0.6
3,439,891	+		GFF3396	0.55	+1.6
3,439,897	+		GFF3396	0.55	-0.3
3,439,899	-		GFF3396	0.55	-0.6
3,439,899	-		GFF3396	0.55	-1.3
3,439,912	+		GFF3396	0.56	-0.1
3,439,912	-		GFF3396	0.56	-1.3
3,439,912	-		GFF3396	0.56	+1.1
3,439,919	+		GFF3396	0.57	+0.5
3,439,920	-		GFF3396	0.57	+1.0
3,439,927	-		GFF3396	0.57	-0.7
3,439,927	-		GFF3396	0.57	-1.2
3,439,927	-		GFF3396	0.57	+1.0
3,439,929	+		GFF3396	0.57	+0.6
3,439,929	+		GFF3396	0.57	-1.3
3,439,929	+		GFF3396	0.57	-0.9
3,439,937	-		GFF3396	0.58	-1.0
3,439,949	-		GFF3396	0.58	-0.9
3,439,974	-		GFF3396	0.60	-0.5
3,439,983	+		GFF3396	0.61	+0.0
3,439,985	+		GFF3396	0.61	+1.0
3,439,985	+		GFF3396	0.61	+1.3
3,439,986	-		GFF3396	0.61	+0.7
3,439,987	-		GFF3396	0.61	+1.1
3,439,999	-		GFF3396	0.62	+0.3
3,440,002	+		GFF3396	0.62	+0.5
3,440,010	+		GFF3396	0.62	-0.4
3,440,078	-		GFF3396	0.66	-1.4
3,440,086	-		GFF3396	0.67	+1.8
3,440,086	-		GFF3396	0.67	-0.5
3,440,086	-		GFF3396	0.67	-0.3
3,440,098	-		GFF3396	0.68	+1.9
3,440,100	+		GFF3396	0.68	+1.5
3,440,108	-		GFF3396	0.68	+0.1
3,440,108	-		GFF3396	0.68	+0.8
3,440,109	+		GFF3396	0.68	+0.9
3,440,109	+		GFF3396	0.68	+0.6
3,440,117	-		GFF3396	0.69	-0.4
3,440,124	-		GFF3396	0.69	+0.9
3,440,152	+		GFF3396	0.71	+0.5
3,440,152	+		GFF3396	0.71	-0.9
3,440,154	+		GFF3396	0.71	-1.1
3,440,159	+		GFF3396	0.71	-0.3
3,440,160	-		GFF3396	0.71	+0.5
3,440,160	-		GFF3396	0.71	+1.5
3,440,160	-		GFF3396	0.71	-0.3
3,440,160	-		GFF3396	0.71	-0.0
3,440,160	-		GFF3396	0.71	-0.7
3,440,172	-		GFF3396	0.72	+1.5
3,440,176	+		GFF3396	0.72	-0.8
3,440,183	+		GFF3396	0.73	-2.0
3,440,185	+		GFF3396	0.73	-0.5
3,440,188	-		GFF3396	0.73	-0.1
3,440,191	+		GFF3396	0.73	+0.0
3,440,226	+		GFF3396	0.76	+1.3
3,440,226	+		GFF3396	0.76	+1.5
3,440,237	+		GFF3396	0.76	+0.7
3,440,244	-		GFF3396	0.77	-0.1
3,440,267	+		GFF3396	0.78	-0.5
3,440,267	+		GFF3396	0.78	+0.7
3,440,267	+		GFF3396	0.78	-1.6
3,440,267	+		GFF3396	0.78	+0.3
3,440,267	+		GFF3396	0.78	-1.0
3,440,267	+		GFF3396	0.78	-1.4
3,440,267	+		GFF3396	0.78	-0.6
3,440,267	+		GFF3396	0.78	+0.7
3,440,269	+		GFF3396	0.78	+1.4
3,440,269	+		GFF3396	0.78	+1.8
3,440,275	-		GFF3396	0.79	+0.3
3,440,275	-		GFF3396	0.79	-0.5
3,440,275	-		GFF3396	0.79	-1.4
3,440,275	-		GFF3396	0.79	+0.7
3,440,275	-		GFF3396	0.79	-0.3
3,440,275	-		GFF3396	0.79	-0.7
3,440,277	-		GFF3396	0.79	-0.7
3,440,308	-		GFF3396	0.81	+0.8
3,440,339	-		GFF3396	0.83	+0.7
3,440,367	+		GFF3396	0.84	-0.7
3,440,387	-		GFF3396	0.86	-0.6
3,440,425	+		GFF3396	0.88	-1.3
3,440,459	+				+0.1
3,440,462	+				+0.5
3,440,462	+				+0.5
3,440,467	+				-0.5
3,440,467	+				-0.8
3,440,470	-				-0.6
3,440,472	+				+0.0
3,440,472	+				-1.4
3,440,472	+				-0.3
3,440,475	-				+1.5
3,440,480	-				+0.9
3,440,480	-				-0.3
3,440,480	-				-0.3
3,440,490	-				-0.2
3,440,507	-				-0.9
3,440,517	+				-0.8
3,440,517	+				+0.3
3,440,525	-				-0.1
3,440,525	-				-0.6
3,440,535	+				-0.2
3,440,561	-				+0.7
3,440,574	-				+0.8
3,440,580	-				-0.1
3,440,588	+				-1.2
3,440,595	+				-1.0
3,440,641	+				+0.6
3,440,649	-				+0.8
3,440,649	-				+0.1
3,440,656	+				-1.0
3,440,664	-				-0.0
3,440,677	+				-1.6
3,440,677	+				-0.6
3,440,685	+				+1.9
3,440,685	-				-0.5
3,440,686	-				-1.0
3,440,709	+				+1.5
3,440,752	-				+0.5
3,440,756	+				-0.3
3,440,766	-				-1.1
3,440,776	+				-1.5
3,440,789	+				+0.5
3,440,815	+				-0.8
3,440,825	+				+0.0
3,440,825	+				-0.7
3,440,825	+				+1.9
3,440,826	+				-1.0
3,440,830	+				+0.3
3,440,833	-				+2.1
3,440,833	-				+0.7
3,440,852	+				-0.0
3,440,869	+				+0.5
3,440,874	+				-0.5
3,440,882	-				-1.1
3,440,884	+				-0.6
3,440,885	+				+0.6
3,440,890	+				+1.3
3,440,892	-				+0.1
3,440,892	-				+0.9
3,440,898	-				-1.1
3,440,905	+				-1.1
3,440,905	+				-1.0
3,440,905	+				+0.0
3,440,905	+				+0.2
3,440,913	-				-0.3
3,440,913	-				-0.5
3,440,920	+				-0.3
3,440,920	+				+0.4
3,440,920	+				+0.1
3,440,920	+				-1.7
3,440,920	+				+1.5
3,440,920	+				+0.4
3,440,925	-				-0.3
3,440,928	-				-1.0
3,440,928	-				-1.0
3,440,928	-				-0.2
3,440,928	-				+1.0
3,440,928	-				-0.1
3,440,928	-				-0.6
3,440,940	+				-1.1
3,440,940	+				-0.1
3,440,948	-				-0.0
3,440,948	-				-0.5
3,440,968	-				+0.4
3,440,996	-				-1.0
3,441,021	+		GFF3397	0.11	+0.1
3,441,021	+		GFF3397	0.11	-0.6
3,441,021	+		GFF3397	0.11	-0.3
3,441,021	+		GFF3397	0.11	+0.7
3,441,021	+		GFF3397	0.11	-1.4
3,441,021	+		GFF3397	0.11	+0.4
3,441,021	+		GFF3397	0.11	-0.7
3,441,021	+		GFF3397	0.11	+0.2
3,441,021	+		GFF3397	0.11	-0.2
3,441,021	+		GFF3397	0.11	-0.2
3,441,021	+		GFF3397	0.11	+0.2
3,441,021	+		GFF3397	0.11	+0.6
3,441,021	+		GFF3397	0.11	+0.3
3,441,021	+		GFF3397	0.11	-0.1
3,441,026	+		GFF3397	0.11	-0.3
3,441,028	+		GFF3397	0.11	-0.3
3,441,029	-		GFF3397	0.11	-1.3
3,441,029	-		GFF3397	0.11	+0.6
3,441,029	-		GFF3397	0.11	-1.3
3,441,029	-		GFF3397	0.11	+1.1
3,441,029	-		GFF3397	0.11	-0.9
3,441,029	-		GFF3397	0.11	-0.9
3,441,029	-		GFF3397	0.11	-1.5
3,441,029	-		GFF3397	0.11	+0.0
3,441,029	-		GFF3397	0.11	-1.6
3,441,029	-		GFF3397	0.11	-0.3
3,441,031	+		GFF3397	0.11	+0.6
3,441,034	-		GFF3397	0.12	-0.9
3,441,036	-		GFF3397	0.12	+1.0
3,441,039	-		GFF3397	0.12	+0.0
3,441,046	-		GFF3397	0.12	-2.1
3,441,047	+		GFF3397	0.12	+0.7
3,441,048	+		GFF3397	0.12	-0.1
3,441,055	-		GFF3397	0.13	-0.0
3,441,056	-		GFF3397	0.13	+0.1
3,441,060	-		GFF3397	0.13	+0.8
3,441,078	-		GFF3397	0.14	-0.7
3,441,084	-		GFF3397	0.14	-1.0
3,441,104	-		GFF3397	0.15	-1.0
3,441,108	-		GFF3397	0.16	-0.5
3,441,121	+		GFF3397	0.16	+0.3
3,441,131	+		GFF3397	0.17	+1.5
3,441,139	-		GFF3397	0.17	+0.5
3,441,195	+		GFF3397	0.20	+0.1
3,441,195	+		GFF3397	0.20	+0.9
3,441,195	+		GFF3397	0.20	-0.1
3,441,208	+		GFF3397	0.21	-0.6
3,441,215	+		GFF3397	0.21	-0.6
3,441,222	+		GFF3397	0.22	-0.6
3,441,234	+		GFF3397	0.22	-0.5
3,441,234	+		GFF3397	0.22	+0.9
3,441,234	+		GFF3397	0.22	-1.1
3,441,234	+		GFF3397	0.22	-0.8
3,441,242	-		GFF3397	0.23	-0.1
3,441,242	-		GFF3397	0.23	-0.9
3,441,242	-		GFF3397	0.23	+1.7
3,441,248	+		GFF3397	0.23	+0.5
3,441,256	-		GFF3397	0.23	+0.5
3,441,268	-		GFF3397	0.24	-0.5
3,441,301	+		GFF3397	0.26	-0.3
3,441,301	+		GFF3397	0.26	-0.6
3,441,337	+		GFF3397	0.28	+0.7
3,441,342	+		GFF3397	0.28	+0.3
3,441,347	+		GFF3397	0.28	-1.5
3,441,348	+		GFF3397	0.28	-1.4
3,441,348	+		GFF3397	0.28	-0.8
3,441,348	+		GFF3397	0.28	+0.4
3,441,348	+		GFF3397	0.28	-1.3
3,441,348	+		GFF3397	0.28	-0.3
3,441,356	-		GFF3397	0.29	-0.7
3,441,356	-		GFF3397	0.29	-0.1
3,441,360	-		GFF3397	0.29	-0.5
3,441,377	+		GFF3397	0.30	-0.6
3,441,385	-		GFF3397	0.30	+0.0
3,441,391	-		GFF3397	0.31	+0.7
3,441,391	-		GFF3397	0.31	+0.9
3,441,399	+		GFF3397	0.31	+1.1
3,441,404	+		GFF3397	0.31	-0.2
3,441,463	+		GFF3397	0.35	-1.6
3,441,477	-		GFF3397	0.35	-0.4
3,441,490	+		GFF3397	0.36	-0.3
3,441,496	+		GFF3397	0.36	-1.0
3,441,498	-		GFF3397	0.36	-0.5
3,441,500	-		GFF3397	0.36	-0.1
3,441,500	-		GFF3397	0.36	+0.3
3,441,500	-		GFF3397	0.36	+0.8
3,441,524	-		GFF3397	0.38	-0.3
3,441,526	-		GFF3397	0.38	-0.7
3,441,541	-		GFF3397	0.39	-0.0
3,441,580	+		GFF3397	0.41	+1.5
3,441,584	+		GFF3397	0.41	+1.1
3,441,619	-		GFF3397	0.43	-0.7
3,441,629	-		GFF3397	0.43	-1.6
3,441,632	+		GFF3397	0.44	+0.1
3,441,649	+		GFF3397	0.44	-0.8
3,441,649	+		GFF3397	0.44	-1.7
3,441,679	+		GFF3397	0.46	+0.0
3,441,687	-		GFF3397	0.46	-0.1
3,441,695	-		GFF3397	0.47	-0.5
3,441,718	+		GFF3397	0.48	+0.7
3,441,718	+		GFF3397	0.48	+0.7
3,441,764	-		GFF3397	0.51	-0.3
3,441,782	-		GFF3397	0.52	+0.0
3,441,815	-		GFF3397	0.53	-0.5
3,441,827	-		GFF3397	0.54	+0.4
3,441,882	-		GFF3397	0.57	+0.9
3,441,887	+		GFF3397	0.57	+0.4
3,441,887	+		GFF3397	0.57	+1.5
3,441,889	+		GFF3397	0.57	+1.0
3,441,889	+		GFF3397	0.57	-0.3
3,441,889	+		GFF3397	0.57	+0.4
3,441,896	-		GFF3397	0.58	+0.1
3,441,897	-		GFF3397	0.58	+0.0
3,441,897	-		GFF3397	0.58	-0.0
3,441,897	-		GFF3397	0.58	+0.2
3,441,897	-		GFF3397	0.58	-0.7
3,441,897	-		GFF3397	0.58	-0.3
3,441,902	-		GFF3397	0.58	+0.0
3,441,907	-		GFF3397	0.58	+0.3
3,441,916	-		GFF3397	0.59	+0.7
3,441,959	-		GFF3397	0.61	-0.5
3,441,964	-		GFF3397	0.61	-0.3
3,441,970	+		GFF3397	0.62	-1.0
3,441,970	+		GFF3397	0.62	-1.6
3,441,972	-		GFF3397	0.62	+0.1
3,441,982	+		GFF3397	0.62	-0.6
3,442,001	+		GFF3397	0.63	-0.5
3,442,001	+		GFF3397	0.63	+0.3
3,442,001	+		GFF3397	0.63	-0.5
3,442,001	+		GFF3397	0.63	-1.0
3,442,001	+		GFF3397	0.63	-0.2
3,442,001	+		GFF3397	0.63	+0.3
3,442,001	+		GFF3397	0.63	-0.5
3,442,001	+		GFF3397	0.63	+0.5
3,442,001	+		GFF3397	0.63	-0.8
3,442,001	+		GFF3397	0.63	-0.6
3,442,007	-		GFF3397	0.64	+0.2
3,442,009	-		GFF3397	0.64	-0.8
3,442,009	-		GFF3397	0.64	+0.3
3,442,009	-		GFF3397	0.64	+1.5
3,442,009	-		GFF3397	0.64	-1.1
3,442,009	-		GFF3397	0.64	-1.3
3,442,009	-		GFF3397	0.64	+0.5
3,442,009	-		GFF3397	0.64	-1.1
3,442,009	-		GFF3397	0.64	+1.0
3,442,009	-		GFF3397	0.64	-1.2
3,442,009	-		GFF3397	0.64	-1.2
3,442,009	-		GFF3397	0.64	-0.3
3,442,018	+		GFF3397	0.64	-0.7
3,442,028	+		GFF3397	0.65	-0.5
3,442,028	+		GFF3397	0.65	-1.3
3,442,033	+		GFF3397	0.65	-0.3
3,442,036	-		GFF3397	0.65	+2.4
3,442,036	-		GFF3397	0.65	-1.0
3,442,036	-		GFF3397	0.65	-1.9
3,442,061	-		GFF3397	0.66	+0.1
3,442,073	-		GFF3397	0.67	+0.4
3,442,073	-		GFF3397	0.67	+1.0
3,442,078	+		GFF3397	0.67	-1.6
3,442,089	+		GFF3397	0.68	-0.0
3,442,089	+		GFF3397	0.68	+0.9
3,442,102	+		GFF3397	0.69	-0.1
3,442,102	+		GFF3397	0.69	+0.3
3,442,102	+		GFF3397	0.69	-0.0
3,442,102	+		GFF3397	0.69	+0.8
3,442,102	+		GFF3397	0.69	+0.6
3,442,102	+		GFF3397	0.69	+0.3
3,442,102	+		GFF3397	0.69	-1.3
3,442,102	+		GFF3397	0.69	-0.2
3,442,102	+		GFF3397	0.69	+0.3
3,442,104	+		GFF3397	0.69	-0.9
3,442,110	-		GFF3397	0.69	+1.1
3,442,110	-		GFF3397	0.69	+1.7
3,442,115	+		GFF3397	0.69	+0.3
3,442,120	+		GFF3397	0.70	+1.2
3,442,139	-		GFF3397	0.71	-0.8
3,442,152	+		GFF3397	0.71	-1.4
3,442,160	-		GFF3397	0.72	-0.3
3,442,187	-		GFF3397	0.73	-1.0
3,442,205	+		GFF3397	0.74	+0.4
3,442,235	+		GFF3397	0.76	+0.3
3,442,235	+		GFF3397	0.76	-2.0
3,442,235	+		GFF3397	0.76	+0.8
3,442,235	+		GFF3397	0.76	-0.3
3,442,235	+		GFF3397	0.76	-0.6
3,442,237	+		GFF3397	0.76	+1.4
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