Strain Fitness in Sphingobium sp. HT1-2 around GFF3324

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,377,640	+				-0.6
3,377,640	+				+0.2
3,377,643	-				-0.0
3,377,648	-				-0.2
3,377,648	-				-1.8
3,377,648	-				-1.0
3,377,671	+				-0.4
3,377,671	+				-1.7
3,377,671	+				-1.2
3,377,671	+				-0.8
3,377,671	+				-1.5
3,377,671	+				-1.7
3,377,671	+				-1.4
3,377,671	+				-1.9
3,377,671	+				-2.7
3,377,671	+				-0.9
3,377,671	+				-1.1
3,377,671	+				-1.3
3,377,671	+				-0.4
3,377,671	+				-2.1
3,377,671	+				-2.2
3,377,671	+				-0.5
3,377,671	+				-2.6
3,377,671	+				-0.2
3,377,671	+				-0.9
3,377,676	+				-1.1
3,377,679	-				-0.6
3,377,679	-				-1.4
3,377,679	-				-1.2
3,377,679	-				-0.9
3,377,679	-				-1.4
3,377,679	-				-0.7
3,377,679	-				-1.2
3,377,679	-				-0.9
3,377,679	-				-2.2
3,377,679	-				-0.9
3,377,679	-				-0.2
3,377,679	-				-1.3
3,377,679	-				-1.1
3,377,679	-				-1.0
3,377,681	+				-0.0
3,377,684	-				-2.7
3,377,694	-				-0.6
3,377,696	+				-1.6
3,377,721	-				-0.4
3,377,725	-				-0.1
3,377,727	+				-1.0
3,377,752	+		GFF3323	0.12	-0.7
3,377,752	+		GFF3323	0.12	-1.2
3,377,769	+		GFF3323	0.14	-1.6
3,377,779	+		GFF3323	0.15	-1.8
3,377,779	+		GFF3323	0.15	-1.6
3,377,787	-		GFF3323	0.16	-2.3
3,377,787	-		GFF3323	0.16	-1.1
3,377,801	+		GFF3323	0.18	-0.4
3,377,840	+		GFF3323	0.22	-2.0
3,377,841	+		GFF3323	0.22	-1.0
3,377,841	+		GFF3323	0.22	-1.8
3,377,849	-		GFF3323	0.23	-1.6
3,377,854	+		GFF3323	0.24	-1.2
3,377,857	-		GFF3323	0.24	-1.2
3,377,857	-		GFF3323	0.24	-1.2
3,377,870	+		GFF3323	0.25	-1.2
3,377,872	-		GFF3323	0.26	-1.4
3,377,918	+		GFF3323	0.31	-2.4
3,377,949	-		GFF3323	0.34	-2.2
3,377,960	+		GFF3323	0.35	-2.2
3,377,960	+		GFF3323	0.35	-1.0
3,377,960	+		GFF3323	0.35	-1.8
3,377,960	+		GFF3323	0.35	-1.9
3,377,960	+		GFF3323	0.35	-1.8
3,377,960	+		GFF3323	0.35	-2.2
3,377,968	-		GFF3323	0.36	-1.0
3,377,968	-		GFF3323	0.36	-0.8
3,377,968	-		GFF3323	0.36	-1.6
3,377,968	-		GFF3323	0.36	-1.4
3,377,978	-		GFF3323	0.37	+0.3
3,378,016	-		GFF3323	0.42	-0.7
3,378,080	-		GFF3323	0.49	-0.6
3,378,116	+		GFF3323	0.53	-1.4
3,378,116	-		GFF3323	0.53	-1.4
3,378,126	-		GFF3323	0.54	-1.6
3,378,171	-		GFF3323	0.59	-0.5
3,378,188	+		GFF3323	0.60	-1.4
3,378,212	+		GFF3323	0.63	-0.7
3,378,219	+		GFF3323	0.64	-1.4
3,378,246	+		GFF3323	0.67	-0.8
3,378,256	+		GFF3323	0.68	-0.9
3,378,256	+		GFF3323	0.68	-3.0
3,378,256	+		GFF3323	0.68	-1.2
3,378,256	+		GFF3323	0.68	-1.7
3,378,256	+		GFF3323	0.68	-1.4
3,378,256	+		GFF3323	0.68	-1.6
3,378,256	+		GFF3323	0.68	-0.4
3,378,258	+		GFF3323	0.68	-1.8
3,378,264	-		GFF3323	0.69	-0.5
3,378,264	-		GFF3323	0.69	+0.8
3,378,264	-		GFF3323	0.69	-0.9
3,378,264	-		GFF3323	0.69	-1.4
3,378,283	-		GFF3323	0.71	-1.9
3,378,322	+		GFF3323	0.75	-0.9
3,378,334	-		GFF3323	0.77	-1.2
3,378,335	-		GFF3323	0.77	-0.4
3,378,372	+		GFF3323	0.81	+1.4
3,378,402	+		GFF3323	0.84	-0.9
3,378,411	+		GFF3323	0.85	-0.6
3,378,419	-		GFF3323	0.86	-1.0
3,378,419	-		GFF3323	0.86	+0.6
3,378,450	+		GFF3323	0.89	-1.0
3,378,452	+		GFF3323	0.90	-1.6
3,378,452	+		GFF3323	0.90	+0.6
3,378,459	+				-1.0
3,378,459	-				-1.2
3,378,460	-				+0.5
3,378,504	+				-1.0
3,378,504	+				-1.4
3,378,509	+				-1.4
3,378,509	+				-2.1
3,378,511	-				-1.4
3,378,511	-				-0.8
3,378,512	-				-0.8
3,378,517	-				-0.4
3,378,517	-				-0.4
3,378,521	+				-0.2
3,378,523	-				-1.6
3,378,529	-				-1.1
3,378,533	-				-0.8
3,378,555	+				-0.2
3,378,568	+				-0.8
3,378,578	-				-1.2
3,378,578	-				-0.7
3,378,638	+				-0.0
3,378,646	-				-1.0
3,378,646	-				-1.5
3,379,327	-				-1.0
3,379,329	-				+0.3
3,379,340	+				-0.5
3,379,394	+		GFF3325	0.11	-1.0
3,379,402	-		GFF3325	0.12	+0.6
3,379,412	-		GFF3325	0.14	+0.9
3,379,414	+		GFF3325	0.15	-0.7
3,379,414	+		GFF3325	0.15	+1.1
3,379,414	+		GFF3325	0.15	-1.2
3,379,422	-		GFF3325	0.16	-0.4
3,379,422	-		GFF3325	0.16	-0.1
3,379,422	-		GFF3325	0.16	-0.5
3,379,422	-		GFF3325	0.16	+0.1
3,379,422	-		GFF3325	0.16	-1.0
3,379,447	+		GFF3325	0.21	-1.4
3,379,447	+		GFF3325	0.21	-1.0
3,379,447	+		GFF3325	0.21	+1.2
3,379,447	+		GFF3325	0.21	-1.2
3,379,447	+		GFF3325	0.21	+0.2
3,379,455	-		GFF3325	0.22	-1.2
3,379,455	-		GFF3325	0.22	+1.4
3,379,455	-		GFF3325	0.22	-0.6
3,379,457	+		GFF3325	0.23	+0.1
3,379,465	-		GFF3325	0.24	-0.0
3,379,478	+		GFF3325	0.27	-0.7
3,379,517	+		GFF3325	0.34	-0.9
3,379,533	+		GFF3325	0.37	+1.4
3,379,533	+		GFF3325	0.37	-0.4
3,379,533	+		GFF3325	0.37	-1.2
3,379,533	+		GFF3325	0.37	+1.4
3,379,533	+		GFF3325	0.37	-0.7
3,379,533	+		GFF3325	0.37	-1.6
3,379,541	-		GFF3325	0.39	+1.6
3,379,541	-		GFF3325	0.39	-1.4
3,379,541	-		GFF3325	0.39	-0.6
3,379,541	-		GFF3325	0.39	-0.7
3,379,541	-		GFF3325	0.39	-1.6
3,379,541	-		GFF3325	0.39	-1.2
3,379,541	-		GFF3325	0.39	-0.5
3,379,541	-		GFF3325	0.39	+1.7
3,379,573	+		GFF3325	0.45	-2.1
3,379,578	-		GFF3325	0.46	-0.5
3,379,588	+		GFF3325	0.47	+2.3
3,379,593	+		GFF3325	0.48	+1.0
3,379,603	-		GFF3325	0.50	-0.4
3,379,606	+		GFF3325	0.51	-0.1
3,379,606	+		GFF3325	0.51	+0.6
3,379,614	-		GFF3325	0.52	-0.7
3,379,614	-		GFF3325	0.52	-0.1
3,379,614	-		GFF3325	0.52	-0.6
3,379,614	-		GFF3325	0.52	-1.4
3,379,614	-		GFF3325	0.52	+1.3
3,379,651	-		GFF3325	0.59	+1.4
3,379,693	+		GFF3325	0.67	-1.2
3,379,700	+		GFF3325	0.69	+1.0
3,379,700	+		GFF3325	0.69	-0.5
3,379,702	+		GFF3325	0.69	-0.9
3,379,711	-		GFF3325	0.71	-0.0
3,379,713	+		GFF3325	0.71	-0.4
3,379,713	+		GFF3325	0.71	-0.4
3,379,721	-		GFF3325	0.73	-1.6
3,379,721	-		GFF3325	0.73	-0.2
3,379,742	+		GFF3325	0.76	-1.2
3,379,742	+		GFF3325	0.76	+1.2
3,379,742	+		GFF3325	0.76	-0.8
3,379,742	+		GFF3325	0.76	+0.7
3,379,771	+		GFF3325	0.82	+0.1
3,379,793	+		GFF3325	0.86	-0.2
3,379,793	+		GFF3325	0.86	-0.8
3,379,801	-		GFF3325	0.88	-0.6
3,379,824	+				+0.4
3,379,827	-				-0.5
3,379,827	-				+0.3
3,379,832	-				-1.1
3,379,839	+				+1.4
3,379,839	+				-1.5
3,379,839	+				+0.9
3,379,839	+				-0.6
3,379,839	+				-0.6
3,379,847	-				+0.6
3,379,847	-				+1.2
3,379,847	-				-0.4
3,379,847	-				-0.0
3,379,847	-				-1.5
3,379,847	-				-1.1
3,379,847	-				+0.6
3,379,847	-				-0.4
3,379,847	-				-0.0
3,379,860	+				-0.6
3,379,880	-				+0.4
3,379,880	-				-0.9
3,379,884	+				+0.1
3,379,894	+				+0.6
3,379,912	+				-1.6
3,379,950	-				-0.7
3,379,952	+				+0.1
3,379,952	+				-0.9
3,379,960	-		GFF3326	0.11	+0.5
3,379,960	-		GFF3326	0.11	-0.0
3,379,960	-		GFF3326	0.11	-0.7
3,379,960	-		GFF3326	0.11	+1.2
3,379,960	-		GFF3326	0.11	-0.6
3,379,962	+		GFF3326	0.11	-0.6
3,379,962	+		GFF3326	0.11	-1.2
3,379,962	+		GFF3326	0.11	-0.2
3,379,962	+		GFF3326	0.11	+0.1
3,379,963	+		GFF3326	0.11	+0.9
3,379,963	+		GFF3326	0.11	-0.7
3,379,963	+		GFF3326	0.11	+0.4
3,379,963	+		GFF3326	0.11	-0.4
3,379,968	+		GFF3326	0.12	-1.8
3,379,971	-		GFF3326	0.12	+0.9
3,379,971	-		GFF3326	0.12	-0.6
3,379,971	-		GFF3326	0.12	-1.1
3,379,971	-		GFF3326	0.12	-1.1
3,379,971	-		GFF3326	0.12	+0.3
3,379,971	-		GFF3326	0.12	+0.5
3,379,971	-		GFF3326	0.12	+0.2
3,379,971	-		GFF3326	0.12	-0.4
3,379,971	-		GFF3326	0.12	-1.7
3,379,981	+		GFF3326	0.13	-0.1
3,379,981	+		GFF3326	0.13	-1.5
3,379,989	-		GFF3326	0.14	+1.8
3,379,989	-		GFF3326	0.14	-0.3
3,380,020	-		GFF3326	0.17	+0.2
3,380,020	-		GFF3326	0.17	-0.8
3,380,042	-		GFF3326	0.20	-0.6
3,380,075	-		GFF3326	0.23	-0.7
3,380,075	-		GFF3326	0.23	-0.9
3,380,112	+		GFF3326	0.28	-0.4
3,380,115	+		GFF3326	0.28	-0.4
3,380,115	+		GFF3326	0.28	+0.3
3,380,133	+		GFF3326	0.30	-1.9
3,380,147	+		GFF3326	0.31	-0.6
3,380,147	-		GFF3326	0.31	-1.4
3,380,147	-		GFF3326	0.31	-1.0
3,380,147	-		GFF3326	0.31	+1.1
3,380,169	+		GFF3326	0.34	-0.1
3,380,223	+		GFF3326	0.40	-1.6
3,380,228	+		GFF3326	0.40	-1.2
3,380,228	+		GFF3326	0.40	-1.2
3,380,236	-		GFF3326	0.41	-0.4
3,380,236	-		GFF3326	0.41	-1.9
3,380,236	-		GFF3326	0.41	-0.3
3,380,236	-		GFF3326	0.41	-0.5
3,380,236	-		GFF3326	0.41	-1.0
3,380,239	+		GFF3326	0.42	-0.5
3,380,250	+		GFF3326	0.43	+1.1
3,380,253	-		GFF3326	0.43	+1.1
3,380,270	-		GFF3326	0.45	+0.7
3,380,277	-		GFF3326	0.46	-2.4
3,380,287	-		GFF3326	0.47	-0.2
3,380,318	+		GFF3326	0.50	-1.7
3,380,326	+		GFF3326	0.51	-0.3