Strain Fitness in Sphingobium sp. HT1-2 around GFF3250

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,303,772	+		GFF3249	0.27	+0.4
3,303,790	+		GFF3249	0.29	+0.3
3,303,808	-		GFF3249	0.30	-0.1
3,303,808	-		GFF3249	0.30	+0.2
3,303,838	-		GFF3249	0.33	-0.5
3,303,844	+		GFF3249	0.33	+0.2
3,303,844	+		GFF3249	0.33	+0.2
3,303,852	-		GFF3249	0.34	+1.4
3,303,852	-		GFF3249	0.34	+0.1
3,303,852	-		GFF3249	0.34	-0.9
3,303,872	-		GFF3249	0.36	-0.9
3,303,873	-		GFF3249	0.36	-0.5
3,303,905	-		GFF3249	0.38	+0.3
3,303,909	-		GFF3249	0.39	+1.1
3,303,926	-		GFF3249	0.40	-0.0
3,303,940	-		GFF3249	0.41	-0.9
3,303,941	-		GFF3249	0.41	-0.5
3,303,943	+		GFF3249	0.42	-1.0
3,303,943	+		GFF3249	0.42	-1.6
3,303,957	+		GFF3249	0.43	+0.6
3,303,957	+		GFF3249	0.43	-0.1
3,303,962	+		GFF3249	0.43	-1.5
3,303,978	+		GFF3249	0.45	-0.2
3,303,978	+		GFF3249	0.45	+1.4
3,304,000	+		GFF3249	0.46	-1.3
3,304,000	+		GFF3249	0.46	+0.3
3,304,008	-		GFF3249	0.47	+1.1
3,304,023	+		GFF3249	0.48	-0.3
3,304,081	+		GFF3249	0.53	-0.1
3,304,081	+		GFF3249	0.53	-1.0
3,304,082	+		GFF3249	0.53	+0.6
3,304,082	+		GFF3249	0.53	+0.1
3,304,082	+		GFF3249	0.53	-1.5
3,304,082	+		GFF3249	0.53	+0.6
3,304,082	+		GFF3249	0.53	-0.7
3,304,082	+		GFF3249	0.53	-0.3
3,304,082	+		GFF3249	0.53	-1.0
3,304,082	+		GFF3249	0.53	-0.2
3,304,082	+		GFF3249	0.53	+0.5
3,304,090	-		GFF3249	0.54	-0.5
3,304,090	-		GFF3249	0.54	-1.6
3,304,090	-		GFF3249	0.54	+1.4
3,304,090	-		GFF3249	0.54	+0.1
3,304,090	-		GFF3249	0.54	+0.3
3,304,090	-		GFF3249	0.54	-0.5
3,304,090	-		GFF3249	0.54	+0.9
3,304,090	-		GFF3249	0.54	-0.1
3,304,097	+		GFF3249	0.55	-2.2
3,304,101	+		GFF3249	0.55	-0.1
3,304,104	-		GFF3249	0.55	-0.1
3,304,105	-		GFF3249	0.55	+1.1
3,304,105	-		GFF3249	0.55	+1.6
3,304,109	-		GFF3249	0.56	+0.4
3,304,109	-		GFF3249	0.56	-0.7
3,304,109	-		GFF3249	0.56	-1.3
3,304,109	-		GFF3249	0.56	-0.6
3,304,123	-		GFF3249	0.57	+0.4
3,304,138	-		GFF3249	0.58	-0.4
3,304,139	-		GFF3249	0.58	-0.0
3,304,141	-		GFF3249	0.58	-0.1
3,304,181	-		GFF3249	0.62	+0.6
3,304,181	-		GFF3249	0.62	+0.4
3,304,182	-		GFF3249	0.62	+0.1
3,304,183	+		GFF3249	0.62	+2.0
3,304,191	-		GFF3249	0.63	+1.4
3,304,237	+		GFF3249	0.67	+0.6
3,304,242	+		GFF3249	0.67	+0.4
3,304,284	-		GFF3249	0.71	-1.3
3,304,295	+		GFF3249	0.72	+1.4
3,304,303	-		GFF3249	0.72	+0.3
3,304,340	-		GFF3249	0.75	-0.7
3,304,386	+		GFF3249	0.79	-1.0
3,304,394	-		GFF3249	0.80	+0.5
3,304,398	-		GFF3249	0.80	-1.9
3,304,421	+		GFF3249	0.82	+0.2
3,304,421	+		GFF3249	0.82	+1.7
3,304,421	+		GFF3249	0.82	+0.6
3,304,426	+		GFF3249	0.83	-0.0
3,304,426	-		GFF3249	0.83	-0.1
3,304,429	-		GFF3249	0.83	+1.4
3,304,429	-		GFF3249	0.83	-0.5
3,304,429	-		GFF3249	0.83	+1.3
3,304,446	-		GFF3249	0.84	-2.3
3,304,446	-		GFF3249	0.84	-0.9
3,304,464	+		GFF3249	0.86	+1.7
3,304,488	+		GFF3249	0.88	-1.6
3,304,488	+		GFF3249	0.88	-0.1
3,304,488	+		GFF3249	0.88	-0.0
3,304,496	-		GFF3249	0.89	-0.1
3,304,496	-		GFF3249	0.89	+0.7
3,304,496	-		GFF3249	0.89	-1.3
3,304,496	-		GFF3249	0.89	+1.6
3,304,548	-				-1.0
3,304,580	-				-0.9
3,304,597	+				-0.2
3,304,604	-				+0.6
3,304,634	+				-0.5
3,304,642	-				-0.5
3,304,642	-				-1.5
3,304,652	-				-0.1
3,304,657	-				-0.5
3,304,781	-				-0.0
3,304,794	-				-1.3
3,304,795	-				+0.4
3,304,799	-				-0.0
3,304,799	-				-0.6
3,304,805	-				+0.4
3,304,812	-				-0.5
3,304,812	-				-0.6
3,304,812	-				-0.1
3,304,855	+				+0.6
3,304,865	+				-1.6
3,304,870	+				-1.7
3,304,934	-				-0.0
3,304,955	+				+0.4
3,304,956	+				+1.0
3,304,957	+				-1.6
3,304,965	+				-0.5
3,304,965	-				+0.9
3,305,013	-				-1.1
3,305,049	-		GFF3250	0.10	+0.1
3,305,109	+		GFF3250	0.12	+0.8
3,305,109	+		GFF3250	0.12	-1.1
3,305,130	+		GFF3250	0.13	-0.4
3,305,168	+		GFF3250	0.14	-1.1
3,305,195	-		GFF3250	0.15	-0.1
3,305,195	-		GFF3250	0.15	+1.4
3,305,195	-		GFF3250	0.15	-2.3
3,305,197	+		GFF3250	0.15	-0.1
3,305,205	-		GFF3250	0.15	-0.8
3,305,310	+		GFF3250	0.19	-0.6
3,305,310	+		GFF3250	0.19	-0.1
3,305,310	+		GFF3250	0.19	+0.1
3,305,312	+		GFF3250	0.19	-0.4
3,305,312	-		GFF3250	0.19	+0.7
3,305,318	-		GFF3250	0.19	-0.9
3,305,318	-		GFF3250	0.19	-0.1
3,305,320	-		GFF3250	0.19	-0.0
3,305,320	-		GFF3250	0.19	+0.9
3,305,329	+		GFF3250	0.19	+1.4
3,305,342	-		GFF3250	0.20	-0.7
3,305,352	-		GFF3250	0.20	-0.5
3,305,354	-		GFF3250	0.20	+0.4
3,305,357	-		GFF3250	0.20	+0.4
3,305,396	+		GFF3250	0.21	-0.2
3,305,396	+		GFF3250	0.21	+3.2
3,305,396	+		GFF3250	0.21	+0.1
3,305,409	+		GFF3250	0.22	-1.5
3,305,444	+		GFF3250	0.23	+0.1
3,305,445	-		GFF3250	0.23	+0.6
3,305,522	+		GFF3250	0.25	-0.4
3,305,522	+		GFF3250	0.25	-0.5
3,305,530	-		GFF3250	0.26	+1.9
3,305,532	+		GFF3250	0.26	+0.6
3,305,532	+		GFF3250	0.26	-0.8
3,305,537	+		GFF3250	0.26	-3.0
3,305,537	+		GFF3250	0.26	+0.9
3,305,540	-		GFF3250	0.26	-0.0
3,305,540	-		GFF3250	0.26	-1.3
3,305,540	-		GFF3250	0.26	+0.7
3,305,540	-		GFF3250	0.26	+0.4
3,305,540	-		GFF3250	0.26	-0.2
3,305,540	-		GFF3250	0.26	-0.9
3,305,542	+		GFF3250	0.26	-0.4
3,305,545	-		GFF3250	0.26	+0.1
3,305,545	-		GFF3250	0.26	-0.1
3,305,545	-		GFF3250	0.26	-1.8
3,305,545	-		GFF3250	0.26	-0.0
3,305,570	+		GFF3250	0.27	+0.0
3,305,570	+		GFF3250	0.27	-0.6
3,305,586	+		GFF3250	0.27	+1.4
3,305,594	-		GFF3250	0.28	+0.5
3,305,597	+		GFF3250	0.28	+0.1
3,305,611	-		GFF3250	0.28	-0.7
3,305,679	+		GFF3250	0.30	+0.5
3,305,687	-		GFF3250	0.31	+0.4
3,305,702	+		GFF3250	0.31	+0.4
3,305,710	+		GFF3250	0.31	+0.6
3,305,710	+		GFF3250	0.31	-0.6
3,305,734	-		GFF3250	0.32	+0.3
3,305,736	+		GFF3250	0.32	-0.5
3,305,749	+		GFF3250	0.33	+1.3
3,305,797	+		GFF3250	0.34	-1.1
3,305,797	+		GFF3250	0.34	+0.3
3,305,797	+		GFF3250	0.34	+0.2
3,305,817	-		GFF3250	0.35	+0.3
3,305,841	+		GFF3250	0.35	-1.1
3,305,864	+		GFF3250	0.36	+0.4
3,305,864	+		GFF3250	0.36	+1.4
3,305,864	+		GFF3250	0.36	-0.7
3,305,869	+		GFF3250	0.36	-2.0
3,305,902	-		GFF3250	0.37	-2.2
3,305,984	+		GFF3250	0.40	+0.5
3,305,992	-		GFF3250	0.40	-1.4
3,305,992	-		GFF3250	0.40	+0.0
3,305,992	-		GFF3250	0.40	-0.1
3,306,017	+		GFF3250	0.41	-0.4
3,306,030	+		GFF3250	0.41	-0.5
3,306,030	+		GFF3250	0.41	+0.9
3,306,052	+		GFF3250	0.42	+0.1
3,306,055	+		GFF3250	0.42	+1.8
3,306,065	-		GFF3250	0.42	-0.9
3,306,094	-		GFF3250	0.43	-1.3
3,306,099	-		GFF3250	0.44	-0.1
3,306,107	+		GFF3250	0.44	-0.7
3,306,117	+		GFF3250	0.44	-0.9
3,306,128	+		GFF3250	0.44	+1.3
3,306,133	+		GFF3250	0.45	-0.8
3,306,133	+		GFF3250	0.45	+0.4
3,306,133	+		GFF3250	0.45	+0.5
3,306,141	-		GFF3250	0.45	-0.4
3,306,142	+		GFF3250	0.45	+0.9
3,306,148	+		GFF3250	0.45	-0.7
3,306,217	+		GFF3250	0.47	-0.3
3,306,225	-		GFF3250	0.48	-0.1
3,306,235	-		GFF3250	0.48	-0.4
3,306,239	+		GFF3250	0.48	+2.2
3,306,240	+		GFF3250	0.48	+0.7
3,306,248	-		GFF3250	0.48	+1.1
3,306,255	+		GFF3250	0.48	+1.0
3,306,263	+		GFF3250	0.49	+0.1
3,306,263	+		GFF3250	0.49	+0.7
3,306,273	+		GFF3250	0.49	+1.3
3,306,278	+		GFF3250	0.49	+0.2
3,306,279	+		GFF3250	0.49	-1.1
3,306,281	-		GFF3250	0.49	-0.0
3,306,281	-		GFF3250	0.49	-0.5
3,306,367	+		GFF3250	0.52	+0.1
3,306,377	-		GFF3250	0.52	+0.2
3,306,386	-		GFF3250	0.53	+1.0
3,306,395	+		GFF3250	0.53	-1.1
3,306,408	+		GFF3250	0.53	-0.2
3,306,416	-		GFF3250	0.54	-2.1
3,306,424	-		GFF3250	0.54	-1.5
3,306,450	+		GFF3250	0.55	-0.7
3,306,450	+		GFF3250	0.55	+0.2
3,306,456	+		GFF3250	0.55	-0.9
3,306,466	+		GFF3250	0.55	+0.6
3,306,466	+		GFF3250	0.55	+1.2
3,306,479	+		GFF3250	0.56	+1.1
3,306,483	+		GFF3250	0.56	-2.6
3,306,487	-		GFF3250	0.56	+0.6
3,306,487	-		GFF3250	0.56	-1.2
3,306,492	-		GFF3250	0.56	-0.4
3,306,519	-		GFF3250	0.57	-0.8
3,306,538	+		GFF3250	0.57	+1.9
3,306,541	-		GFF3250	0.58	-1.8
3,306,541	-		GFF3250	0.58	+1.3
3,306,598	-		GFF3250	0.59	+0.5
3,306,608	-		GFF3250	0.60	+1.1
3,306,627	+		GFF3250	0.60	-1.0
3,306,647	+		GFF3250	0.61	+0.5
3,306,732	+		GFF3250	0.64	+0.3
3,306,745	-		GFF3250	0.64	-0.4
3,306,746	+		GFF3250	0.64	-1.8
3,306,746	+		GFF3250	0.64	-0.9
3,306,746	+		GFF3250	0.64	+0.2
3,306,754	-		GFF3250	0.64	-1.1
3,306,765	-		GFF3250	0.65	-0.6
3,306,884	+		GFF3250	0.68	+0.9
3,306,884	-		GFF3250	0.68	-0.7
3,306,899	+		GFF3250	0.69	+0.2
3,306,913	-		GFF3250	0.69	+0.7
3,306,974	+		GFF3250	0.71	+0.6
3,306,993	+		GFF3250	0.72	-1.8
3,306,995	+		GFF3250	0.72	-0.2
3,307,031	-		GFF3250	0.73	-1.6
3,307,040	+		GFF3250	0.73	-2.7
3,307,044	-		GFF3250	0.73	-1.4
3,307,051	+		GFF3250	0.74	-0.7
3,307,075	+		GFF3250	0.74	-0.8
3,307,078	-		GFF3250	0.75	+0.2
3,307,079	+		GFF3250	0.75	+0.5
3,307,095	-		GFF3250	0.75	+0.9
3,307,109	+		GFF3250	0.75	-0.5
3,307,111	-		GFF3250	0.76	+0.9
3,307,159	-		GFF3250	0.77	-0.0
3,307,163	+		GFF3250	0.77	-1.1
3,307,179	+		GFF3250	0.78	+1.1
3,307,201	+		GFF3250	0.78	-1.7
3,307,251	+		GFF3250	0.80	+2.7
3,307,251	+		GFF3250	0.80	+0.5
3,307,251	+		GFF3250	0.80	+0.1
3,307,259	-		GFF3250	0.80	+0.7
3,307,290	+		GFF3250	0.81	-0.2
3,307,343	+		GFF3250	0.83	-0.1
3,307,383	-		GFF3250	0.84	+0.1
3,307,384	+		GFF3250	0.84	+0.8
3,307,409	-		GFF3250	0.85	-1.3
3,307,423	+		GFF3250	0.85	-1.7
3,307,423	+		GFF3250	0.85	-0.9
3,307,423	+		GFF3250	0.85	-0.5
3,307,431	-		GFF3250	0.86	-1.3
3,307,431	-		GFF3250	0.86	+2.1
3,307,433	+		GFF3250	0.86	-0.3
3,307,433	-		GFF3250	0.86	+1.0
3,307,441	+		GFF3250	0.86	-1.6
3,307,454	-		GFF3250	0.86	+0.7
3,307,454	-		GFF3250	0.86	+0.6
3,307,461	+		GFF3250	0.87	+0.5
3,307,461	+		GFF3250	0.87	-0.5
3,307,469	-		GFF3250	0.87	+1.1
3,307,479	+		GFF3250	0.87	-1.6
3,307,489	-		GFF3250	0.87	-0.0
3,307,546	-		GFF3250	0.89	+0.4
3,307,562	+		GFF3250	0.90	-0.7
3,307,563	+		GFF3250	0.90	-0.3
3,307,626	+				+0.3
3,307,643	-				-1.7
3,307,663	+				+2.0
3,307,691	+				+0.6
3,307,707	-				-0.3
3,307,712	-				+0.4
3,307,714	-				+0.2
3,307,724	-				+0.1
3,307,742	-				+1.1
3,307,749	-				+2.0
3,307,749	-				-0.4
3,307,764	+				+0.4
3,307,768	+				+0.7
3,307,768	-				-0.6
3,307,775	+				-1.4
3,307,779	+				+0.7
3,307,783	-				-0.1
3,307,787	+				-1.8
3,307,795	-				+1.0
3,307,795	-				-0.0
3,307,807	-				-0.6
3,307,807	-				-0.6
3,307,813	-				-0.9
3,307,818	-				+0.7
3,307,840	-				-0.5
3,307,862	+				-1.8
3,307,870	-				+0.3
3,307,870	-				-0.7
3,307,873	-				+0.9
3,307,906	+				+1.4
3,307,972	-				+0.4
3,307,982	-				-0.2
3,308,095	-		GFF3251	0.10	-1.8
3,308,119	+		GFF3251	0.12	-0.1
3,308,119	+		GFF3251	0.12	+0.4
3,308,119	+		GFF3251	0.12	-1.6
3,308,119	+		GFF3251	0.12	+0.9
3,308,119	+		GFF3251	0.12	+0.1
3,308,119	+		GFF3251	0.12	+1.4
3,308,119	+		GFF3251	0.12	+1.5
3,308,122	-		GFF3251	0.12	-0.5
3,308,127	-		GFF3251	0.13	-0.8
3,308,127	-		GFF3251	0.13	+0.9
3,308,127	-		GFF3251	0.13	-0.2
3,308,127	-		GFF3251	0.13	-0.1
3,308,127	-		GFF3251	0.13	-0.6
3,308,145	+		GFF3251	0.14	-1.9
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