Strain Fitness in Sphingobium sp. HT1-2 around GFF3205

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,261,918	+		GFF3203	0.83	-0.9
3,262,061	-				-1.0
3,262,084	+				-0.3
3,262,084	+				-1.4
3,262,092	+				-0.6
3,262,092	-				+1.3
3,262,100	-				-2.1
3,262,100	-				-1.6
3,262,100	-				-0.1
3,262,100	-				+0.4
3,262,121	+		GFF3204	0.11	-0.9
3,262,121	+		GFF3204	0.11	-1.0
3,262,126	+		GFF3204	0.12	-0.3
3,262,129	-		GFF3204	0.12	-1.0
3,262,134	-		GFF3204	0.13	-0.6
3,262,134	-		GFF3204	0.13	+0.5
3,262,134	-		GFF3204	0.13	+0.3
3,262,179	+		GFF3204	0.19	-0.1
3,262,181	-		GFF3204	0.19	+0.4
3,262,183	+		GFF3204	0.20	+0.1
3,262,189	-		GFF3204	0.20	+0.8
3,262,189	-		GFF3204	0.20	+1.2
3,262,192	+		GFF3204	0.21	-0.5
3,262,192	+		GFF3204	0.21	-0.6
3,262,194	+		GFF3204	0.21	-0.2
3,262,197	-		GFF3204	0.21	+0.5
3,262,200	-		GFF3204	0.22	-0.9
3,262,254	-		GFF3204	0.29	+1.5
3,262,262	-		GFF3204	0.30	+0.0
3,262,271	+		GFF3204	0.31	-0.8
3,262,274	-		GFF3204	0.32	-1.7
3,262,309	-		GFF3204	0.36	-1.7
3,262,309	-		GFF3204	0.36	+0.2
3,262,321	+		GFF3204	0.38	-0.3
3,262,321	+		GFF3204	0.38	-1.2
3,262,350	+		GFF3204	0.42	-0.1
3,262,350	+		GFF3204	0.42	-0.3
3,262,350	+		GFF3204	0.42	-1.6
3,262,350	+		GFF3204	0.42	+0.3
3,262,350	+		GFF3204	0.42	-0.5
3,262,363	+		GFF3204	0.44	-1.2
3,262,363	+		GFF3204	0.44	+0.4
3,262,366	-		GFF3204	0.44	-0.9
3,262,366	-		GFF3204	0.44	+1.0
3,262,442	+		GFF3204	0.54	-0.2
3,262,464	+		GFF3204	0.57	-0.8
3,262,464	+		GFF3204	0.57	+0.2
3,262,471	-		GFF3204	0.58	-1.2
3,262,480	-		GFF3204	0.59	+1.7
3,262,480	-		GFF3204	0.59	-0.3
3,262,480	-		GFF3204	0.59	-0.4
3,262,490	-		GFF3204	0.61	-1.1
3,262,579	+		GFF3204	0.72	+1.4
3,262,634	-		GFF3204	0.80	-0.7
3,262,654	+		GFF3204	0.82	-2.2
3,262,657	-		GFF3204	0.83	+0.3
3,262,671	+		GFF3204	0.85	-1.5
3,262,677	+		GFF3204	0.85	+0.5
3,262,677	+		GFF3204	0.85	-0.5
3,262,677	-		GFF3204	0.85	-0.3
3,262,679	-		GFF3204	0.86	-1.2
3,262,682	+		GFF3204	0.86	-1.8
3,262,685	-		GFF3204	0.87	+1.7
3,262,685	-		GFF3204	0.87	-0.1
3,262,687	+		GFF3204	0.87	+0.0
3,262,687	+		GFF3204	0.87	-0.3
3,262,687	+		GFF3204	0.87	-1.1
3,262,689	-		GFF3204	0.87	-0.1
3,262,692	+		GFF3204	0.87	-1.1
3,262,692	+		GFF3204	0.87	+0.3
3,262,716	+				-0.6
3,262,718	+				-1.2
3,262,726	-				-0.6
3,262,738	+				+0.8
3,262,742	+				-0.6
3,262,747	-				-0.3
3,262,749	+				-1.8
3,262,761	+				-0.2
3,262,761	+				-1.0
3,262,766	+				+0.5
3,262,774	-				-1.5
3,262,774	-				-0.5
3,262,774	-				-0.7
3,262,781	+				+1.1
3,262,807	-				-0.1
3,262,823	+				-2.7
3,262,830	-				-1.7
3,262,831	-				-1.9
3,262,831	-				-0.3
3,262,831	-				+0.5
3,262,831	-				+0.2
3,262,896	-				+1.1
3,262,904	-				-1.6
3,262,904	-				+0.8
3,262,910	+				-0.8
3,262,920	+				-0.6
3,262,920	+				-0.6
3,262,920	+				-0.7
3,262,920	+				-0.5
3,262,928	-				-1.0
3,262,928	-				-0.7
3,262,928	-				+0.2
3,262,954	+		GFF3205	0.20	+1.2
3,262,954	+		GFF3205	0.20	-0.6
3,262,954	+		GFF3205	0.20	+0.8
3,262,955	+		GFF3205	0.21	+0.2
3,262,955	+		GFF3205	0.21	-0.3
3,262,955	+		GFF3205	0.21	-1.1
3,262,962	-		GFF3205	0.24	-0.5
3,263,017	-		GFF3205	0.47	-0.2
3,263,027	-		GFF3205	0.51	-0.1
3,263,031	+		GFF3205	0.53	-2.0
3,263,039	-		GFF3205	0.56	+0.0
3,263,044	+		GFF3205	0.58	-1.0
3,263,123	+				-2.0
3,263,131	+				-1.1
3,263,145	-				-1.5
3,263,153	-				-1.1
3,263,176	+				-0.3
3,263,181	+				-0.3
3,263,181	+				-0.3
3,263,184	-				-0.1
3,263,184	-				-1.2
3,263,184	-				+0.7
3,263,184	-				+0.4
3,263,186	+				+0.1
3,263,188	+				-0.9
3,263,189	-				-0.3
3,263,194	-				-1.7
3,263,194	-				-0.1
3,263,194	-				+0.2
3,263,195	-				-0.3
3,263,195	-				-1.2
3,263,217	+		GFF3206	0.10	-0.3
3,263,252	-		GFF3206	0.16	-0.7
3,263,281	-		GFF3206	0.20	+0.2
3,263,294	+		GFF3206	0.22	+0.9
3,263,294	+		GFF3206	0.22	-0.4
3,263,294	+		GFF3206	0.22	-1.6
3,263,302	+		GFF3206	0.23	-0.2
3,263,302	-		GFF3206	0.23	+1.0
3,263,302	-		GFF3206	0.23	-0.2
3,263,331	+		GFF3206	0.27	-0.9
3,263,332	-		GFF3206	0.27	-2.4
3,263,336	-		GFF3206	0.28	+0.7
3,263,338	+		GFF3206	0.28	-1.6
3,263,338	+		GFF3206	0.28	-1.2
3,263,344	+		GFF3206	0.29	-1.3
3,263,353	+		GFF3206	0.31	+2.2
3,263,355	+		GFF3206	0.31	+0.3
3,263,361	-		GFF3206	0.32	+0.3
3,263,367	+		GFF3206	0.33	-0.4
3,263,372	+		GFF3206	0.33	-0.8
3,263,375	-		GFF3206	0.34	+0.0
3,263,375	-		GFF3206	0.34	+0.5
3,263,375	-		GFF3206	0.34	-0.5
3,263,398	+		GFF3206	0.37	+1.8
3,263,398	+		GFF3206	0.37	+1.3
3,263,398	+		GFF3206	0.37	-0.5
3,263,403	+		GFF3206	0.38	-1.5
3,263,406	-		GFF3206	0.38	+0.0
3,263,438	-		GFF3206	0.43	-1.0
3,263,440	+		GFF3206	0.43	-1.5
3,263,443	-		GFF3206	0.44	-0.9
3,263,448	-		GFF3206	0.45	-1.0
3,263,451	+		GFF3206	0.45	-0.9
3,263,459	-		GFF3206	0.46	-0.3
3,263,495	+		GFF3206	0.52	-0.6
3,263,495	+		GFF3206	0.52	-0.6
3,263,528	+		GFF3206	0.56	-1.4
3,263,531	-		GFF3206	0.57	+0.2
3,263,533	+		GFF3206	0.57	-0.5
3,263,550	+		GFF3206	0.60	-0.9
3,263,550	+		GFF3206	0.60	-0.8
3,263,552	-		GFF3206	0.60	+1.2
3,263,555	+		GFF3206	0.60	+0.2
3,263,558	-		GFF3206	0.61	+1.9
3,263,558	-		GFF3206	0.61	-1.0
3,263,560	+		GFF3206	0.61	-0.9
3,263,568	-		GFF3206	0.62	-0.5
3,263,568	-		GFF3206	0.62	-0.7
3,263,572	+		GFF3206	0.63	+0.1
3,263,577	+		GFF3206	0.64	-0.6
3,263,577	+		GFF3206	0.64	+0.7
3,263,577	+		GFF3206	0.64	-0.7
3,263,577	+		GFF3206	0.64	+0.7
3,263,577	+		GFF3206	0.64	+0.4
3,263,585	-		GFF3206	0.65	-1.5
3,263,585	-		GFF3206	0.65	+0.7
3,263,585	-		GFF3206	0.65	-0.4
3,263,585	-		GFF3206	0.65	-0.3
3,263,597	+		GFF3206	0.67	-0.3
3,263,597	+		GFF3206	0.67	-0.5
3,263,597	+		GFF3206	0.67	+0.8
3,263,597	+		GFF3206	0.67	-0.6
3,263,597	+		GFF3206	0.67	-1.3
3,263,605	-		GFF3206	0.68	+0.4
3,263,605	-		GFF3206	0.68	-0.5
3,263,605	-		GFF3206	0.68	+0.0
3,263,605	-		GFF3206	0.68	-1.1
3,263,605	-		GFF3206	0.68	+0.2
3,263,605	-		GFF3206	0.68	+1.2
3,263,605	-		GFF3206	0.68	-0.8
3,263,605	-		GFF3206	0.68	-0.1
3,263,605	-		GFF3206	0.68	-0.5
3,263,623	+		GFF3206	0.71	-0.9
3,263,626	+		GFF3206	0.71	-1.5
3,263,639	-		GFF3206	0.73	-1.4
3,263,654	+		GFF3206	0.75	-1.4
3,263,654	+		GFF3206	0.75	+0.2
3,263,654	+		GFF3206	0.75	+1.1
3,263,654	+		GFF3206	0.75	-0.5
3,263,654	+		GFF3206	0.75	-0.3
3,263,662	-		GFF3206	0.76	+0.9
3,263,662	-		GFF3206	0.76	+0.3
3,263,662	-		GFF3206	0.76	+0.3
3,263,662	-		GFF3206	0.76	-0.2
3,263,662	-		GFF3206	0.76	-0.3
3,263,662	-		GFF3206	0.76	-1.3
3,263,665	+		GFF3206	0.77	-0.9
3,263,697	-		GFF3206	0.81	-1.3
3,263,723	+		GFF3206	0.85	-0.1
3,263,731	-		GFF3206	0.87	-1.2
3,263,752	+		GFF3206	0.90	-0.6
3,263,759	-				-0.6
3,263,761	+				+0.5
3,263,762	+				-0.8
3,263,762	+				-1.0
3,263,765	-				-0.8
3,263,765	-				-0.3
3,263,765	-				+0.5
3,263,765	-				-0.2
3,263,767	+				-0.7
3,263,770	-				-0.2
3,263,771	+				-0.8
3,263,771	+				+1.1
3,263,771	+				-0.6
3,263,771	+				-2.1
3,263,771	+				-0.9
3,263,777	-				-0.3
3,263,779	-				-0.2
3,263,779	-				-0.6
3,263,784	+				-1.3
3,263,794	+				-0.1
3,263,802	-				-0.2
3,263,802	-				-2.2
3,263,819	+				-1.0
3,263,827	-				-0.8
3,263,827	-				-1.1
3,263,829	+				-1.0
3,263,831	+				-1.1
3,263,837	-				-0.3
3,263,837	-				-1.1
3,263,842	+				+0.4
3,263,859	+				-0.1
3,263,867	-				-0.6
3,263,867	-				-1.6
3,263,882	-		GFF3207	0.19	+0.6
3,263,882	-		GFF3207	0.19	-0.3
3,263,882	-		GFF3207	0.19	-1.7
3,263,883	+		GFF3207	0.20	-0.1
3,263,899	+		GFF3207	0.30	-2.5
3,263,899	+		GFF3207	0.30	+0.6
3,263,901	-		GFF3207	0.31	-0.4
3,263,907	-		GFF3207	0.35	-0.1
3,263,912	-		GFF3207	0.38	-2.5
3,263,921	+		GFF3207	0.43	+1.4
3,263,931	+		GFF3207	0.49	-0.7
3,263,931	+		GFF3207	0.49	+0.4
3,263,931	+		GFF3207	0.49	-1.1
3,263,931	+		GFF3207	0.49	+0.3
3,263,931	+		GFF3207	0.49	-1.1
3,263,931	+		GFF3207	0.49	+0.4
3,263,931	+		GFF3207	0.49	-2.2
3,263,931	+		GFF3207	0.49	-0.3
3,263,931	+		GFF3207	0.49	-1.3
3,263,939	-		GFF3207	0.54	+1.4
3,263,939	-		GFF3207	0.54	-1.2
3,263,939	-		GFF3207	0.54	-1.5
3,263,939	-		GFF3207	0.54	-0.5
3,263,939	-		GFF3207	0.54	-1.3
3,263,939	-		GFF3207	0.54	-1.7
3,263,939	-		GFF3207	0.54	+0.4
3,263,939	-		GFF3207	0.54	-0.1
3,263,939	-		GFF3207	0.54	-1.3
3,263,939	-		GFF3207	0.54	-0.8
3,263,939	-		GFF3207	0.54	-1.2
3,263,939	-		GFF3207	0.54	-0.6
3,263,939	-		GFF3207	0.54	-0.9
3,263,939	-		GFF3207	0.54	-0.6
3,263,939	-		GFF3207	0.54	-2.3
3,263,939	-		GFF3207	0.54	-0.1
3,263,939	-		GFF3207	0.54	-1.7
3,263,947	-		GFF3207	0.59	-0.7
3,263,947	-		GFF3207	0.59	-1.1
3,263,947	-		GFF3207	0.59	+0.5
3,263,949	+		GFF3207	0.60	-2.0
3,263,949	+		GFF3207	0.60	-1.3
3,263,954	+		GFF3207	0.64	-1.9
3,263,954	+		GFF3207	0.64	-1.4
3,263,954	+		GFF3207	0.64	+0.4
3,263,954	+		GFF3207	0.64	+0.3
3,263,962	-		GFF3207	0.69	-1.2
3,264,043	+				-1.6
3,264,051	-				-0.5
3,264,071	-				-0.6
3,264,075	+				-0.7
3,264,076	-				-1.6
3,264,083	-				-0.5
3,264,090	+				-0.9
3,264,090	+				-1.3
3,264,097	+				-0.7