Strain Fitness in Sphingobium sp. HT1-2 around GFF3110

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,180,830	+		GFF3109	0.39	-0.4
3,180,830	+		GFF3109	0.39	+0.4
3,180,830	+		GFF3109	0.39	-0.7
3,180,838	-		GFF3109	0.40	-0.3
3,180,838	-		GFF3109	0.40	+0.5
3,180,838	-		GFF3109	0.40	-0.6
3,180,838	-		GFF3109	0.40	+0.7
3,180,838	-		GFF3109	0.40	-0.3
3,180,838	-		GFF3109	0.40	+0.7
3,180,859	+		GFF3109	0.41	-0.4
3,180,875	+		GFF3109	0.42	-1.0
3,180,878	-		GFF3109	0.42	-0.3
3,180,880	+		GFF3109	0.42	-0.8
3,180,885	+		GFF3109	0.43	+0.3
3,180,901	-		GFF3109	0.44	+0.2
3,180,910	+		GFF3109	0.44	+0.3
3,180,924	+		GFF3109	0.45	-0.2
3,180,924	+		GFF3109	0.45	-0.7
3,180,927	-		GFF3109	0.45	+0.4
3,180,927	-		GFF3109	0.45	-1.8
3,180,932	-		GFF3109	0.45	+1.4
3,180,934	+		GFF3109	0.46	-0.7
3,180,934	+		GFF3109	0.46	-0.8
3,180,934	+		GFF3109	0.46	-1.0
3,180,934	+		GFF3109	0.46	+0.3
3,180,934	+		GFF3109	0.46	+0.2
3,180,934	+		GFF3109	0.46	+1.4
3,180,942	-		GFF3109	0.46	-0.9
3,180,942	-		GFF3109	0.46	+0.7
3,180,942	-		GFF3109	0.46	-1.1
3,180,942	-		GFF3109	0.46	-0.2
3,180,988	+		GFF3109	0.49	+0.4
3,181,005	-		GFF3109	0.50	-0.5
3,181,011	-		GFF3109	0.50	-0.7
3,181,045	-		GFF3109	0.53	-1.3
3,181,045	-		GFF3109	0.53	-0.5
3,181,045	-		GFF3109	0.53	-0.9
3,181,078	-		GFF3109	0.55	-0.2
3,181,093	+		GFF3109	0.55	-0.0
3,181,103	+		GFF3109	0.56	+1.3
3,181,106	-		GFF3109	0.56	+0.4
3,181,108	-		GFF3109	0.56	-0.7
3,181,140	-		GFF3109	0.58	+1.7
3,181,143	+		GFF3109	0.59	-0.1
3,181,148	+		GFF3109	0.59	+0.3
3,181,148	+		GFF3109	0.59	-0.9
3,181,148	+		GFF3109	0.59	-1.3
3,181,148	+		GFF3109	0.59	-0.6
3,181,148	+		GFF3109	0.59	-1.0
3,181,153	+		GFF3109	0.59	-1.6
3,181,156	-		GFF3109	0.59	-0.3
3,181,156	-		GFF3109	0.59	-0.0
3,181,158	+		GFF3109	0.60	+1.0
3,181,161	-		GFF3109	0.60	+1.0
3,181,164	+		GFF3109	0.60	-1.3
3,181,164	+		GFF3109	0.60	+0.4
3,181,164	+		GFF3109	0.60	-0.9
3,181,165	+		GFF3109	0.60	+0.2
3,181,172	-		GFF3109	0.60	-0.7
3,181,174	+		GFF3109	0.61	-0.8
3,181,177	-		GFF3109	0.61	+1.5
3,181,179	+		GFF3109	0.61	-1.7
3,181,182	-		GFF3109	0.61	-2.8
3,181,182	-		GFF3109	0.61	-0.7
3,181,182	-		GFF3109	0.61	-0.1
3,181,182	-		GFF3109	0.61	+0.6
3,181,182	-		GFF3109	0.61	-1.0
3,181,182	-		GFF3109	0.61	+1.1
3,181,182	-		GFF3109	0.61	-0.8
3,181,182	-		GFF3109	0.61	+1.4
3,181,182	-		GFF3109	0.61	-0.5
3,181,182	-		GFF3109	0.61	-1.7
3,181,182	-		GFF3109	0.61	-1.1
3,181,182	-		GFF3109	0.61	+0.2
3,181,187	-		GFF3109	0.61	-1.0
3,181,225	-		GFF3109	0.64	+0.3
3,181,244	+		GFF3109	0.65	-1.3
3,181,244	+		GFF3109	0.65	+0.3
3,181,244	+		GFF3109	0.65	-1.6
3,181,244	+		GFF3109	0.65	-0.9
3,181,257	-		GFF3109	0.66	+0.0
3,181,291	+		GFF3109	0.68	-1.1
3,181,298	+		GFF3109	0.68	+0.3
3,181,299	-		GFF3109	0.68	+0.5
3,181,299	-		GFF3109	0.68	+1.6
3,181,306	+		GFF3109	0.69	+1.1
3,181,329	-		GFF3109	0.70	-2.5
3,181,350	+		GFF3109	0.71	-0.7
3,181,360	-		GFF3109	0.72	-0.1
3,181,360	-		GFF3109	0.72	-0.8
3,181,360	-		GFF3109	0.72	+0.9
3,181,373	+		GFF3109	0.73	+0.7
3,181,384	+		GFF3109	0.74	-1.0
3,181,384	+		GFF3109	0.74	+0.1
3,181,392	-		GFF3109	0.74	+0.2
3,181,397	+		GFF3109	0.74	-0.8
3,181,455	+		GFF3109	0.78	-0.5
3,181,511	+		GFF3109	0.81	-1.0
3,181,518	-		GFF3109	0.82	+0.9
3,181,520	+		GFF3109	0.82	-1.1
3,181,547	+		GFF3109	0.84	-0.4
3,181,555	-		GFF3109	0.84	+1.3
3,181,560	+		GFF3109	0.84	-0.6
3,181,560	+		GFF3109	0.84	+1.7
3,181,565	+		GFF3109	0.85	-0.4
3,181,573	-		GFF3109	0.85	-0.8
3,181,592	-		GFF3109	0.86	+1.0
3,181,598	+		GFF3109	0.87	-0.3
3,181,617	+		GFF3109	0.88	+0.4
3,181,630	+		GFF3109	0.89	-0.3
3,181,630	+		GFF3109	0.89	-1.2
3,181,638	-		GFF3109	0.89	+1.3
3,181,654	+				-0.9
3,181,654	+				-0.5
3,181,657	-				-0.1
3,181,661	+				+1.0
3,181,661	+				-0.7
3,181,661	+				+0.9
3,181,664	-				-1.3
3,181,669	-				-0.7
3,181,669	-				-0.5
3,181,669	-				-0.5
3,181,698	+				+1.9
3,181,734	+				+0.1
3,181,734	+				+1.1
3,181,742	+				-1.2
3,181,742	-				-1.2
3,181,750	-				-1.4
3,181,750	-				-0.2
3,181,753	+				-0.4
3,181,761	-				-1.7
3,181,761	-				-2.1
3,181,788	-				-1.1
3,181,788	-				+0.0
3,181,862	+				-1.8
3,181,869	-				+1.4
3,181,889	-				+0.7
3,181,895	+		GFF3110	0.10	-0.5
3,181,903	-		GFF3110	0.11	-0.6
3,181,903	-		GFF3110	0.11	-1.0
3,181,912	+		GFF3110	0.12	+1.2
3,181,918	-		GFF3110	0.13	-1.4
3,181,920	-		GFF3110	0.13	-1.2
3,181,922	+		GFF3110	0.14	+1.0
3,181,927	+		GFF3110	0.14	+0.7
3,181,929	+		GFF3110	0.14	+0.3
3,181,929	+		GFF3110	0.14	+1.3
3,181,930	-		GFF3110	0.14	-1.4
3,181,935	+		GFF3110	0.15	+0.1
3,181,937	-		GFF3110	0.15	-0.3
3,181,937	-		GFF3110	0.15	-0.7
3,181,937	-		GFF3110	0.15	-0.9
3,181,937	-		GFF3110	0.15	+1.4
3,181,937	-		GFF3110	0.15	-0.8
3,181,939	+		GFF3110	0.16	-0.6
3,181,939	+		GFF3110	0.16	-1.0
3,181,943	-		GFF3110	0.16	-0.9
3,181,943	-		GFF3110	0.16	-0.6
3,181,947	-		GFF3110	0.17	-1.0
3,181,947	-		GFF3110	0.17	-2.0
3,181,947	-		GFF3110	0.17	-1.8
3,181,947	-		GFF3110	0.17	-0.4
3,181,953	+		GFF3110	0.17	-0.9
3,181,965	+		GFF3110	0.19	-1.0
3,181,982	-		GFF3110	0.21	+0.7
3,182,023	+		GFF3110	0.26	-0.6
3,182,038	+		GFF3110	0.28	+0.5
3,182,046	-		GFF3110	0.29	-0.9
3,182,046	-		GFF3110	0.29	-1.6
3,182,089	+		GFF3110	0.34	+1.1
3,182,091	+		GFF3110	0.34	+0.3
3,182,101	-		GFF3110	0.35	-1.8
3,182,106	-		GFF3110	0.36	+1.2
3,182,106	-		GFF3110	0.36	-0.3
3,182,126	-		GFF3110	0.38	-0.0
3,182,127	-		GFF3110	0.38	-0.7
3,182,144	+		GFF3110	0.41	+1.2
3,182,185	+		GFF3110	0.45	+1.5
3,182,185	+		GFF3110	0.45	-0.5
3,182,185	+		GFF3110	0.45	-0.7
3,182,185	+		GFF3110	0.45	-0.2
3,182,193	-		GFF3110	0.46	-0.7
3,182,193	-		GFF3110	0.46	-1.2
3,182,202	-		GFF3110	0.48	-1.6
3,182,202	-		GFF3110	0.48	-1.1
3,182,217	-		GFF3110	0.49	-0.1
3,182,225	+		GFF3110	0.50	-1.6
3,182,247	+		GFF3110	0.53	-0.5
3,182,247	+		GFF3110	0.53	-0.8
3,182,255	-		GFF3110	0.54	-1.0
3,182,266	+		GFF3110	0.55	-1.3
3,182,267	+		GFF3110	0.55	-1.5
3,182,282	-		GFF3110	0.57	-2.1
3,182,321	+		GFF3110	0.62	+0.3
3,182,326	+		GFF3110	0.63	-0.5
3,182,326	+		GFF3110	0.63	-0.8
3,182,326	+		GFF3110	0.63	-2.5
3,182,326	+		GFF3110	0.63	+0.5
3,182,326	+		GFF3110	0.63	-0.5
3,182,326	+		GFF3110	0.63	-1.1
3,182,326	+		GFF3110	0.63	-0.9
3,182,334	-		GFF3110	0.64	-0.5
3,182,344	+		GFF3110	0.65	-1.3
3,182,352	-		GFF3110	0.66	+0.3
3,182,352	-		GFF3110	0.66	-0.6
3,182,383	-		GFF3110	0.70	-0.3
3,182,391	+		GFF3110	0.71	+0.2
3,182,391	+		GFF3110	0.71	-0.7
3,182,399	-		GFF3110	0.72	-1.4
3,182,404	+		GFF3110	0.72	+0.5
3,182,415	+		GFF3110	0.73	+0.3
3,182,415	+		GFF3110	0.73	-0.7
3,182,415	+		GFF3110	0.73	+0.4
3,182,415	+		GFF3110	0.73	-0.8
3,182,415	+		GFF3110	0.73	-0.7
3,182,415	+		GFF3110	0.73	-1.5
3,182,415	+		GFF3110	0.73	-1.8
3,182,415	+		GFF3110	0.73	-1.7
3,182,415	+		GFF3110	0.73	-0.8
3,182,415	+		GFF3110	0.73	-0.5
3,182,415	+		GFF3110	0.73	-0.0
3,182,415	+		GFF3110	0.73	-0.1
3,182,415	+		GFF3110	0.73	+0.2
3,182,415	+		GFF3110	0.73	-0.5
3,182,415	+		GFF3110	0.73	+0.7
3,182,415	+		GFF3110	0.73	-1.4
3,182,415	+		GFF3110	0.73	-1.0
3,182,415	+		GFF3110	0.73	-0.8
3,182,415	+		GFF3110	0.73	+1.0
3,182,415	+		GFF3110	0.73	-1.1
3,182,415	+		GFF3110	0.73	+0.1
3,182,415	+		GFF3110	0.73	-0.2
3,182,415	+		GFF3110	0.73	-1.6
3,182,415	+		GFF3110	0.73	-2.0
3,182,415	+		GFF3110	0.73	-0.0
3,182,415	+		GFF3110	0.73	+0.3
3,182,415	+		GFF3110	0.73	-0.2
3,182,415	+		GFF3110	0.73	+0.0
3,182,415	+		GFF3110	0.73	-0.2
3,182,415	+		GFF3110	0.73	-0.3
3,182,423	-		GFF3110	0.74	+0.3
3,182,423	-		GFF3110	0.74	+0.4
3,182,423	-		GFF3110	0.74	-0.7
3,182,423	-		GFF3110	0.74	-1.1
3,182,423	-		GFF3110	0.74	-1.7
3,182,423	-		GFF3110	0.74	-1.7
3,182,423	-		GFF3110	0.74	+0.6
3,182,423	-		GFF3110	0.74	+0.3
3,182,423	-		GFF3110	0.74	+0.3
3,182,423	-		GFF3110	0.74	-1.3
3,182,423	-		GFF3110	0.74	-0.7
3,182,423	-		GFF3110	0.74	+0.0
3,182,423	-		GFF3110	0.74	-0.2
3,182,423	-		GFF3110	0.74	-2.1
3,182,423	-		GFF3110	0.74	-1.5
3,182,423	-		GFF3110	0.74	-0.9
3,182,423	-		GFF3110	0.74	+1.9
3,182,423	-		GFF3110	0.74	-1.0
3,182,423	-		GFF3110	0.74	-0.1
3,182,423	-		GFF3110	0.74	-1.4
3,182,423	-		GFF3110	0.74	-0.6
3,182,423	-		GFF3110	0.74	+0.2
3,182,423	-		GFF3110	0.74	-0.7
3,182,423	-		GFF3110	0.74	-0.5
3,182,423	-		GFF3110	0.74	-1.3
3,182,423	-		GFF3110	0.74	-0.5
3,182,423	-		GFF3110	0.74	-1.7
3,182,423	-		GFF3110	0.74	-1.1
3,182,423	-		GFF3110	0.74	-1.0
3,182,423	-		GFF3110	0.74	-1.7
3,182,423	-		GFF3110	0.74	-0.3
3,182,423	-		GFF3110	0.74	-2.2
3,182,423	-		GFF3110	0.74	+0.2
3,182,423	-		GFF3110	0.74	-0.4
3,182,423	-		GFF3110	0.74	+0.6
3,182,423	-		GFF3110	0.74	-0.0
3,182,425	+		GFF3110	0.75	-1.0
3,182,425	+		GFF3110	0.75	-0.9
3,182,428	-		GFF3110	0.75	-1.5
3,182,444	+		GFF3110	0.77	-2.5
3,182,451	+		GFF3110	0.78	-0.9
3,182,504	-		GFF3110	0.84	-0.3
3,182,504	-		GFF3110	0.84	-1.5
3,182,549	+		GFF3110	0.90	-1.1
3,182,549	-		GFF3110	0.90	-0.9
3,182,561	+				+1.0
3,182,561	+				+1.1
3,182,561	+				+0.2
3,182,561	+				-0.6
3,182,561	+				-0.8
3,182,561	+				-0.1
3,182,561	+				-0.7
3,182,561	+				-0.4
3,182,564	-				+0.4
3,182,564	-				+0.1
3,182,569	-				+0.7
3,182,569	-				+0.0
3,182,569	-				+0.0
3,182,569	-				-0.4
3,182,569	-				-0.7
3,182,569	-				-1.3
3,182,569	-				-0.9
3,182,569	-				+0.4
3,182,569	-				+0.7
3,182,569	-				+0.4
3,182,569	-				+0.1
3,182,569	-				-1.7
3,182,569	-				-0.0
3,182,569	-				+0.5
3,182,569	-				-1.3
3,182,569	-				-0.3
3,182,569	-				-2.0
3,182,634	+				-0.2
3,182,642	-				-1.6
3,182,687	-				-0.5
3,182,690	+				+0.7
3,182,690	+				+0.6
3,182,698	+				-0.5
3,182,698	+				-0.3
3,182,704	+				-0.3
3,182,704	+				-0.3
3,182,712	-				-0.7
3,182,795	+		GFF3111	0.11	+0.7
3,182,803	-		GFF3111	0.12	-0.7
3,182,843	-		GFF3111	0.16	-0.6
3,182,844	+		GFF3111	0.16	-0.3
3,182,854	+		GFF3111	0.17	-0.9
3,182,876	-		GFF3111	0.20	-0.9
3,182,878	-		GFF3111	0.20	-1.0
3,182,880	+		GFF3111	0.20	+0.1
3,182,880	+		GFF3111	0.20	-1.0
3,182,892	+		GFF3111	0.21	-0.3
3,182,892	+		GFF3111	0.21	-1.5
3,182,892	+		GFF3111	0.21	+0.1
3,182,892	+		GFF3111	0.21	-0.7
3,182,900	-		GFF3111	0.22	+1.0
3,182,900	-		GFF3111	0.22	-1.9
3,182,900	-		GFF3111	0.22	-0.5
3,182,900	-		GFF3111	0.22	-0.7
3,182,900	-		GFF3111	0.22	+1.4
3,182,900	-		GFF3111	0.22	-1.5
3,182,900	-		GFF3111	0.22	-1.0
3,182,900	-		GFF3111	0.22	-0.8
3,182,900	-		GFF3111	0.22	+1.3
3,182,907	-		GFF3111	0.23	+0.0
3,182,907	-		GFF3111	0.23	-1.1
3,182,909	+		GFF3111	0.23	-2.1
3,182,911	-		GFF3111	0.24	+1.3
3,182,911	-		GFF3111	0.24	-1.2
3,182,911	-		GFF3111	0.24	-0.0
3,182,911	-		GFF3111	0.24	+0.4
3,182,922	+		GFF3111	0.25	+0.7
3,182,930	-		GFF3111	0.26	-1.4
3,182,954	-		GFF3111	0.28	-0.0
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3,182,964	-		GFF3111	0.29	-1.3
3,182,965	-		GFF3111	0.29	-0.2
3,182,980	+		GFF3111	0.31	-2.9
3,182,981	+		GFF3111	0.31	+0.3
3,182,986	+		GFF3111	0.32	-1.8
3,182,988	-		GFF3111	0.32	-0.6
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3,182,988	-		GFF3111	0.32	-1.0
3,182,988	-		GFF3111	0.32	+0.1
3,182,988	-		GFF3111	0.32	+1.0
3,183,007	-		GFF3111	0.34	+0.7
3,183,051	-		GFF3111	0.39	-2.0
3,183,105	-		GFF3111	0.44	-1.0
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3,183,127	-		GFF3111	0.47	-0.6
3,183,127	-		GFF3111	0.47	-0.5
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3,183,150	+		GFF3111	0.49	-0.6
3,183,164	-		GFF3111	0.51	-0.2
3,183,165	-		GFF3111	0.51	+0.4
3,183,190	-		GFF3111	0.54	-0.3
3,183,195	-		GFF3111	0.54	-1.4
3,183,213	+		GFF3111	0.56	-0.8
3,183,213	+		GFF3111	0.56	-1.4
3,183,213	+		GFF3111	0.56	-0.6
3,183,213	+		GFF3111	0.56	+1.5
3,183,213	+		GFF3111	0.56	+1.0
3,183,213	+		GFF3111	0.56	+1.9
3,183,213	+		GFF3111	0.56	+0.5
3,183,221	-		GFF3111	0.57	-1.2
3,183,221	-		GFF3111	0.57	-0.1
3,183,221	-		GFF3111	0.57	-0.9
3,183,221	-		GFF3111	0.57	-1.2
3,183,221	-		GFF3111	0.57	-1.0
3,183,223	-		GFF3111	0.57	-0.3
3,183,230	+		GFF3111	0.58	-1.1
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3,183,342	+		GFF3111	0.70	-1.0
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3,183,342	+		GFF3111	0.70	+1.2
3,183,342	+		GFF3111	0.70	-1.4
3,183,342	+		GFF3111	0.70	-1.7
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3,183,350	-		GFF3111	0.71	-0.3
3,183,355	+		GFF3111	0.71	-0.8
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3,183,403	+		GFF3111	0.77	-1.5
3,183,414	+		GFF3111	0.78	-2.1
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3,183,414	+		GFF3111	0.78	-0.7
3,183,414	+		GFF3111	0.78	-0.6
3,183,414	+		GFF3111	0.78	-0.3
3,183,414	+		GFF3111	0.78	-1.4
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3,183,422	-		GFF3111	0.79	-0.9
3,183,422	-		GFF3111	0.79	-1.0
3,183,422	-		GFF3111	0.79	-0.3
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3,183,422	-		GFF3111	0.79	+0.5
3,183,422	-		GFF3111	0.79	-1.7
3,183,422	-		GFF3111	0.79	+0.5
3,183,458	+		GFF3111	0.83	+0.8
3,183,458	+		GFF3111	0.83	+0.4
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3,183,466	-		GFF3111	0.83	+2.9
3,183,511	+		GFF3111	0.88	-1.7
3,183,511	+		GFF3111	0.88	+0.3
3,183,550	+				-0.5
3,183,554	+				+0.0
3,183,570	+				-0.6
3,183,570	+				-1.5
3,183,583	+				+0.3
3,183,585	+				-0.1
3,183,598	-				-1.0
3,183,598	-				-0.8
3,183,604	-				-0.7
3,183,626	+				-0.6
3,183,629	-				+0.0
3,183,630	-				+0.3